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Simeon Rossmann
cAmpSeqR
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campseqr
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Simeon Rossmann
simeon
1 author
Jan 26, 2024
add vararg to threshold testing
· f695201d
Simeon
authored
1 year ago
f695201d
added vararg to meshclustR
· 8fe235b1
Simeon
authored
1 year ago
8fe235b1
Jan 24, 2024
Update test_clustering_thresholds.R
· dfce775d
Simeon
authored
1 year ago
dfce775d
Update test_clustering_thresholds.R
· 5738f3a8
Simeon
authored
1 year ago
5738f3a8
clustering threshold test for meshclust
· e1761832
Simeon
authored
1 year ago
e1761832
Jan 09, 2024
minor bug fix in subset_by_clusters
· 2a6eb09c
Simeon
authored
1 year ago
2a6eb09c
Nov 08, 2023
bug fix previous commit
· 12621d49
Simeon
authored
1 year ago
12621d49
more efficient cluster writing by only reading in seqtab_nochim once
· 02892b7b
Simeon
authored
1 year ago
02892b7b
Nov 02, 2023
Update combine_cluster_plots_and_save.R
· 3431af23
Simeon
authored
1 year ago
3431af23
Nov 01, 2023
exporting per_cluster_abundance
· 8d1e165d
Simeon
authored
1 year ago
8d1e165d
Oct 31, 2023
implement manual threshold override for meshclust
· 0dad8cc6
Simeon
authored
1 year ago
0dad8cc6
vegdist into NAMESPACE
· c21f727c
Simeon
authored
1 year ago
c21f727c
Update README.md
· 116a8b9d
Simeon Rossmann
authored
1 year ago
116a8b9d
Update count_clusters.R
· 94d5a9e1
Simeon
authored
1 year ago
94d5a9e1
Update variant_classifier.R
· df7ac3cd
Simeon
authored
1 year ago
df7ac3cd
Update variant_classifier.R
· 534b0938
Simeon
authored
1 year ago
534b0938
Update similiarity_to_reference.R
· 7223ad02
Simeon
authored
1 year ago
7223ad02
Update variant_classifier.R
· 01ecde45
Simeon
authored
1 year ago
01ecde45
first try at fixing similarity to seq
· ed44f8be
Simeon
authored
1 year ago
ed44f8be
Update variant_classifier.R
· fbc78132
Simeon
authored
1 year ago
fbc78132
namespace fix import -> importFrom
· 938182ef
Simeon
authored
1 year ago
938182ef
minor bug in clustered_seqs var call
· f6625b45
Simeon
authored
1 year ago
f6625b45
Oct 28, 2023
add ORFik::startDefinition
· 8f0af997
Simeon
authored
1 year ago
8f0af997
Oct 27, 2023
ORFik addition
· 9e0a6fbc
Simeon
authored
1 year ago
9e0a6fbc
Update plot_repeats.R
· 4418dc8a
Simeon
authored
1 year ago
4418dc8a
Update plot_repeats.R
· 39efdb15
Simeon
authored
1 year ago
39efdb15
Update combine_cluster_plots_and_save.R
· a8eca7b1
Simeon
authored
1 year ago
a8eca7b1
as last
· 139a470b
Simeon
authored
1 year ago
139a470b
update combined cluster plot
· 22e1922a
Simeon
authored
1 year ago
22e1922a
Update combine_cluster_plots_and_save.R
· ea261822
Simeon
authored
1 year ago
ea261822
Update combine_cluster_plots_and_save.R
· b2eb26b1
Simeon
authored
1 year ago
b2eb26b1
Update combine_cluster_plots_and_save.R
· 436d3e87
Simeon
authored
1 year ago
436d3e87
import readDNAStringSet
· ef4dffed
Simeon
authored
1 year ago
ef4dffed
Better dependency handling
· de14a9b4
Simeon
authored
1 year ago
de14a9b4
test
· a71f6342
Simeon
authored
1 year ago
a71f6342
test
· d4a6c65d
Simeon
authored
1 year ago
d4a6c65d
test
· 0694b906
Simeon
authored
1 year ago
0694b906
Update README.md
· b236b6f2
Simeon Rossmann
authored
1 year ago
b236b6f2
Oct 26, 2023
Update DESCRIPTION
· 9938fe1d
Simeon
authored
1 year ago
9938fe1d
Clean up, filled DESCRIPTION
· fdf13598
Simeon
authored
1 year ago
fdf13598
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