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Created with Raphaël 2.2.026Jan2498Nov2131Oct282726252022Junadd vararg to threshold testingmainmainadded vararg to meshclustRUpdate test_clustering_thresholds.RUpdate test_clustering_thresholds.Rclustering threshold test for meshclustminor bug fix in subset_by_clustersbug fix previous commitmore efficient cluster writing by only reading in seqtab_nochim onceUpdate combine_cluster_plots_and_save.Rexporting per_cluster_abundanceimplement manual threshold override for meshclustvegdist into NAMESPACEUpdate README.mdUpdate count_clusters.RUpdate variant_classifier.RUpdate variant_classifier.RUpdate similiarity_to_reference.RUpdate variant_classifier.Rfirst try at fixing similarity to seqUpdate variant_classifier.Rnamespace fix import -> importFromminor bug in clustered_seqs var calladd ORFik::startDefinitionORFik additionUpdate plot_repeats.RUpdate plot_repeats.RUpdate combine_cluster_plots_and_save.Ras lastupdate combined cluster plotUpdate combine_cluster_plots_and_save.RUpdate combine_cluster_plots_and_save.RUpdate combine_cluster_plots_and_save.Rimport readDNAStringSetBetter dependency handlingtesttesttestUpdate README.mdUpdate DESCRIPTIONClean up, filled DESCRIPTION