test

NAMESPACE

@@ -50,7 +50,6 @@ import(DECIPHER)
 import(GenomicRanges)
 import(ape)
 import(cowplot)
-import(dplyr)
 import(ggdendro)
 import(ggtree)
 import(phangorn)

R/meshclustR.R

@@ -19,7 +19,6 @@
 #' meshclustR(seqs = MyDNAStringSet, meshclust_bin = meshclust, filepath = path)
 #' @import Biostrings
 #' @import tidyverse
-#' @import dplyr
 #' @export
 meshclustR <- function(seqs = MyDNAStringSet,
                        meshclust_bin = meshclust,
@@ -42,7 +41,7 @@ meshclustR <- function(seqs = MyDNAStringSet,
                                col_names = c('cluster', 'seqnames',
                                              'identity_with_center', 'cluster_class'),
                                col_types = 'fcdc') %>%
-    mutate(seqnames = str_remove(seqnames, '>'))
+    dplyr::mutate(seqnames = str_remove(seqnames, '>'))
 
   #clean up temp file and output file
   file.remove(temp_file, out_file)