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Simeon Rossmann
Rysto supplementary code
Commits
b61ca12b
Commit
b61ca12b
authored
1 year ago
by
Simeon
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improved Lima documentation
parent
04a0c0ec
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Sequel_384_barcodes_v1.fasta
+768
-0
768 additions, 0 deletions
Sequel_384_barcodes_v1.fasta
lima_command.txt
+1
-1
1 addition, 1 deletion
lima_command.txt
with
769 additions
and
1 deletion
Sequel_384_barcodes_v1.fasta
0 → 100644
+
768
−
0
View file @
b61ca12b
>bc1001
CACATATCAGAGTGCG
>bc1002
ACACACAGACTGTGAG
>bc1003
ACACATCTCGTGAGAG
>bc1004
CACGCACACACGCGCG
>bc1005
CACTCGACTCTCGCGT
>bc1006
CATATATATCAGCTGT
>bc1007
TCTGTATCTCTATGTG
>bc1008
ACAGTCGAGCGCTGCG
>bc1009
ACACACGCGAGACAGA
>bc1010
ACGCGCTATCTCAGAG
>bc1011
CTATACGTATATCTAT
>bc1012
ACACTAGATCGCGTGT
>bc1013
CTCTCGCATACGCGAG
>bc1014
CTCACTACGCGCGCGT
>bc1015
CGCATGACACGTGTGT
>bc1016
CATAGAGAGATAGTAT
>bc1017
CACACGCGCGCTATAT
>bc1018
TCACGTGCTCACTGTG
>bc1019
ACACACTCTATCAGAT
>bc1020
CACGACACGACGATGT
>bc1021
CTATACATAGTGATGT
>bc1022
CACTCACGTGTGATAT
>bc1023
CAGAGAGATATCTCTG
>bc1024
CATGTAGAGCAGAGAG
>bc1025
CGCGACACGCTCGCGC
>bc1026
CACAGAGACACGCACA
>bc1027
CTCACACTCTCTCACA
>bc1028
CTCTGCTCTGACTCTC
>bc1029
TATATATGTCTATAGA
>bc1030
TCTCTCTATCGCGCTC
>bc1031
GATGTCTGAGTGTGTG
>bc1032
GAGACTAGAGATAGTG
>bc1033
TCTCGTCGCAGTCTCT
>bc1034
ATGTGTATATAGATAT
>bc1035
GCGCGCGCACTCTCTG
>bc1036
GAGACACGTCGCACAC
>bc1037
ACACATATCGCACTAC
>bc1038
GTGTGTCTCGATGCGC
>bc1039
CGCACACATAGATACA
>bc1040
TGTCATATGAGAGTGT
>bc1041
TCTCGCGCGTGCACGC
>bc1042
CTCGCTCGACGAGCGC
>bc1043
TATAGAGCTCTACATA
>bc1044
GCTGAGACGACGCGCG
>bc1045
ACATATCGTACTCTCT
>bc1046
GATATATCGAGTATAT
>bc1047
TGTCATGTGTACACAC
>bc1048
GTGTGCACTCACACTC
>bc1049
ACACGTGTGCTCTCTC
>bc1050
GATATACGCGAGAGAG
>bc1051
CGTGTCTAGCGCGCGC
>bc1052
GTGTGAGATATATATC
>bc1053
CTCACGTACGTCACAC
>bc1054
GCGCACGCACTACAGA
>bc1055
CACACGAGATCTCATC
>bc1056
AGACACACACGCACAT
>bc1057
GACGAGCGTCTGAGAG
>bc1058
TGTGTCTCTGAGAGTA
>bc1059
CACACGCACTGAGATA
>bc1060
GATGAGTATAGACACA
>bc1061
GCTGTGTGTGCTCGTC
>bc1062
TCTCAGATAGTCTATA
>bc1063
ACACGCATGACACACT
>bc1064
TATATACAGAGTCGAG
>bc1065
GCGCTCTCTCACATAC
>bc1066
TATATGCTCTGTGTGA
>bc1067
CTCTATATATCTCGTC
>bc1068
AGAGAGCTCTCTCATC
>bc1069
GCGAGAGTGAGACGCA
>bc1070
TGCTCTCGTGTACTGT
>bc1071
AGCGCTGCGACACGCG
>bc1072
AGACGCGAGCGCGTAG
>bc1073
GCGTGTGTCGAGTGTA
>bc1074
TGTACGCTCTCTATAT
>bc1075
TAGAGAGCGTCGCGTG
>bc1076
GTGCACTCGCGCTCTC
>bc1077
TATCTCTCGAGTCGCG
>bc1078
CTCACACATACACGTC
>bc1079
ATAGTACACTCTGTGT
>bc1080
TATCTCTGTAGAGTCT
>bc1081
GATATATATGTGTGTA
>bc1082
GTGACACACAGAGCAC
>bc1083
ATATGACATACACGCA
>bc1084
CGTCTCTCGTCTGTGC
>bc1085
ACACAGTAGAGCGAGC
>bc1086
GTCGCGCATAGAGCGC
>bc1087
CTATCTAGCACTCACA
>bc1088
CGTGTCACTCTGCGTG
>bc1089
CGCGCGAGTATCTCGT
>bc1090
AGCACACATATAGCGC
>bc1091
GTATATATATACGTCT
>bc1092
TCTCACGAGAGCGCAC
>bc1093
TAGATGCGAGAGTAGA
>bc1094
ATAGCGACATCTCTCT
>bc1095
GCACGATGTCAGCGCG
>bc1096
TGTGCTCTCTACACAG
>bc1097
CGTCTCTATCTCTCTA
>bc1098
GCGCAGTGTCACATCA
>bc1099
TCTACTACACTGTACT
>bc1100
TCTATGTCTCAGTAGT
>bc1101
ATAGCGACGCGATATA
>bc1102
TCTCTCGATATGATAG
>bc1103
TATACACACTCGCTCG
>bc1104
ATATGAGTGACTCGTG
>bc1105
CACAGTCGCAGTACGC
>bc1106
CACGACTATATGCTCT
>bc1107
TAGAGCGTGCATATAT
>bc1108
ACGACGCGCACTGACA
>bc1109
CTGTGTGTGATAGAGT
>bc1110
GAGCGTGTATACAGCG
>bc1111
TGAGATATGCATGATG
>bc1112
GTGCGCTACAGTCTCT
>bc1113
TCACTGTGTGTGTCTG
>bc1114
GAGAGTAGCGTGTACA
>bc1115
AGATATCATCAGCGAG
>bc1116
TGCTGCGAGCGCTCTG
>bc1117
GTGCATACATACATAT
>bc1118
AGATACACATGATACT
>bc1119
TCACATATGTATACAT
>bc1120
CACTATACACTGCGCT
>bc1121
CGCTCTGTCACGTCTG
>bc1122
GCAGACTCTCACACGC
>bc1123
CACATACTACTACTGA
>bc1124
TACTCACTGCGCTCAC
>bc1125
GATGTGTGCGCAGTGC
>bc1126
GTGTATCAGCGAGTAT
>bc1127
GTCTACGCTCGTCGCG
>bc1128
TATACGAGATACGTGA
>bc1129
CGCGTATGTATGTCGC
>bc1130
CGTCTATATACGTATA
>bc1131
GCGCGTGCTGCGTCTA
>bc1132
CGCGCTCAGCTGATCG
>bc1133
GCTCGACTGTGAGAGA
>bc1134
ACAGAGTGTGCAGATA
>bc1135
CGCACAGATACGCTCT
>bc1136
TATGACTAGTGTACTA
>bc1137
ATACACTCATGTGCAC
>bc1138
TGTCTGATCTGTATCA
>bc1139
GAGACTCTGTGCGCGT
>bc1140
CTCTCGTAGACAGATA
>bc1141
ACATATGTCTGAGACA
>bc1142
TACATATGTCACGCGC
>bc1143
GTGAGTATGTACTCTG
>bc1144
GTCTCTCTCTCACGCA
>bc1145
TGTCGTCTATCATGTA
>bc1146
GCTGCGCTGATATGCG
>bc1147
AGATATACTGTCTGAT
>bc1148
TGATATATACGCGCGT
>bc1149
AGTAGACAGAGCGTGA
>bc1150
ACACTGACGTCGCGAC
>bc1151
ACTCATGTATATGAGT
>bc1152
TCGCTGACTCGACACA
>bc1153
GCTCGCACAGCGCGTC
>bc1154
GAGCTGATGTACATGT
>bc1155
TATGTGTCTGCGCATA
>bc1156
GCGCACAGACATCTGT
>bc1157
TGAGTGAGACATATCA
>bc1158
CATCGCGAGTGCGCTC
>bc1159
TCATACACACAGATAG
>bc1160
TAGCGTGAGAGTGTCG
>bc1161
ACAGTAGACTCTCAGA
>bc1162
GTGACAGACGTCACGC
>bc1163
GTGACTCTATGCTATA
>bc1164
TCTGTCGATATACACT
>bc1165
AGAGATGTGTGATGAC
>bc1166
CTGTGCTATGTACGCG
>bc1167
CAGCGCATCTCACGTC
>bc1168
GTGCAGTGATCGATGA
>bc1169
GACACTCGCATGTGCG
>bc1170
ATATAGCGCATAGCTC
>bc1171
GTCTGTATAGCTATCT
>bc1172
CGTGTCGCGCATATCT
>bc1173
GTCTATCTCGCGAGAG
>bc1174
CACTACTAGCGTGTGC
>bc1175
TACTCATATATGCTAC
>bc1176
AGACACGAGTCTAGAT
>bc1177
TGTGTATCAGTACATG
>bc1178
GTGCGCGAGAGTATAC
>bc1179
AGCGACGCGAGAGTGC
>bc1180
GCGCTAGTGTGTACGA
>bc1181
TGCATAGTAGTGCTCT
>bc1182
GACAGCATCTGCGCTC
>bc1183
TACACACTATGTGCGT
>bc1184
ACTCGCGCACGCGCGA
>bc1185
GATACGAGAGCTGATG
>bc1186
CATCGTCACAGACATA
>bc1187
ATAGAGAGTGTCTCAG
>bc1188
ACAGTACTAGTGCGAG
>bc1189
CTCGTGACGCTGACTG
>bc1190
TGCGAGCGTGCACAGA
>bc1191
CACATGTGACTCGACG
>bc1192
TGTCTCGTGCTGAGAC
>bc1193
ATACGCGCGCGCATGC
>bc1194
CTCTGACTCGCGTCGA
>bc1195
CGAGCATATATATCTC
>bc1196
GTGTAGCGTAGACAGT
>bc1197
ACGACATCGCTCACAG
>bc1198
CATGCTACGTCTCTGT
>bc1199
ATGATGTGCTACATCT
>bc1200
GCACTCAGAGACGCGA
>bc1201
CTATATGAGACGAGTG
>bc1202
TCAGATGTGTCGCGAG
>bc1203
CTCTACATCAGTGCTA
>bc1204
AGATGTCATGTCTCTA
>bc1205
GTGAGAGTCTGATACT
>bc1206
GCGAGACTCAGCTCTG
>bc1207
TACATGTGTCTATGTC
>bc1208
ATCGTATAGTCATACA
>bc1209
GTGATGCATACGTACA
>bc1210
AGTAGTGTGATACTAG
>bc1211
ATGATACACGCGCGAC
>bc1212
TGTAGACTAGCGCTGC
>bc1213
ACTGCGAGATACACAC
>bc1214
ATCTCTGTGCGCGCAG
>bc1215
ACGACAGTCAGAGTAT
>bc1216
CAGATCTCTCTGATGT
>bc1217
TGACATCTACACATAC
>bc1218
GTAGAGTGATCGCGTC
>bc1219
ATGAGTCTCACTGTAT
>bc1220
CTGTGTGCTCGCTATG
>bc1221
ACGTAGTGCACACAGA
>bc1222
TATCTATCGCATATCG
>bc1223
TGCTCGCAGTATCACA
>bc1224
TGTATGAGTGTCTGAC
>bc1225
AGTCTGCGAGACAGAG
>bc1226
GACGACAGACTGCATA
>bc1227
GACGTGTCGTAGATAT
>bc1228
ACTCTCGCTCTGTAGA
>bc1229
ACAGTATGATGTACTC
>bc1230
GAGCTCATGTAGACAC
>bc1231
TATCTGAGCGCGAGCA
>bc1232
GAGATCGACAGTCTCG
>bc1233
GTGCGTATGTCGCTAC
>bc1234
AGCACAGTCACATGTC
>bc1235
CTAGACACGCAGTCAC
>bc1236
ATAGAGACTCAGAGCT
>bc1237
GAGTCTCGATATACTA
>bc1238
CTGTGTATCTGTGTAC
>bc1239
GATATCTCGATCTCTG
>bc1240
TCTCATGTGTGAGCTA
>bc1241
CGCTCATATGAGCTCA
>bc1242
CACTCGTGCACGATGC
>bc1243
GTCTCATCATGCTGCG
>bc1244
ACTCTGCTGTCATCGC
>bc1245
CGCTGCGAGAGACAGT
>bc1246
GCGATACACAGTCGCA
>bc1247
CTGCGTATAGATATGA
>bc1248
CATGTGCGCTCATCAC
>bc1249
ATCTACGACTAGCAGA
>bc1250
GACTGCACATGCACGA
>bc1251
TACACAGCATCTCGCA
>bc1252
AGCACGTGTGTCGACA
>bc1253
GACACTCAGTCTCTCA
>bc1254
TGTCACTCATCTGAGT
>bc1255
TCTACTGCATGATGTC
>bc1256
GTCTGATAGATACAGA
>bc1257
TCACACTGTGCGAGAC
>bc1258
GCACACATATCTGATG
>bc1259
GTATAGCACTCGAGCG
>bc1260
GCGCGATACGATGACT
>bc1261
ACACGTGATAGCTACG
>bc1262
TACATCTCGCTGCGCA
>bc1263
CGTAGCTCGAGATGAG
>bc1264
AGATCGCGCATGTGTA
>bc1265
ATCTCGAGATGTAGCG
>bc1266
GACACAGTGTGTAGTC
>bc1267
GTCAGAGCTCTCGTGC
>bc1268
TCTATCAGCGCTGATG
>bc1269
CGTCTAGATAGAGATG
>bc1270
ACAGTGCGCTGTCTAT
>bc1271
CTGTACTAGAGCGTCT
>bc1272
CGCATATCTCACTAGT
>bc1273
ATACGCATATCGCAGT
>bc1274
ACTCATCACGTCTCGA
>bc1275
CTATACATGACTCTGC
>bc1276
CTCGCACGTCGCATAG
>bc1277
TCAGAGACACTACGAG
>bc1278
ACTCTATGTCGATGTA
>bc1279
GAGATACGCTGCAGTC
>bc1280
CATCACTACGCTAGAT
>bc1281
CTACGATGCTATGTAT
>bc1282
AGCGTAGCGCGCGTCA
>bc1283
AGTCGAGATATACAGT
>bc1284
CACGTGCTCGAGAGTC
>bc1285
AGTCACACGCACGCTG
>bc1286
CGCATCTGTGCATGCA
>bc1287
TCAGCGCACTGTGCTG
>bc1288
GATCTGTCGTGAGCGT
>bc1289
ACGTGAGCTCACTCGC
>bc1290
CAGTGAGAGCGCGATA
>bc1291
TGACAGTATCACAGTG
>bc1292
TAGATCTATCATCGTC
>bc1293
AGTCTGAGAGAGCTAT
>bc1294
ACGTCAGCACTGCTCT
>bc1295
CATACATCGCGCAGTA
>bc1296
GACTCGCGATACTAGA
>bc1297
TACTAGAGTAGCACTC
>bc1298
CGAGTGTGTCTATACT
>bc1299
ATCGCATCGCAGAGAC
>bc1300
GTATAGACAGATGTGC
>bc1301
GCGATCACTGTACACT
>bc1302
ACAGTCTATACTGCTG
>bc1303
ACTGTGACAGTATGAT
>bc1304
ACGTGCTCTATAGAGA
>bc1305
TAGTGTGCGACTCTGA
>bc1306
TGCTATCTGAGATACT
>bc1307
CAGATCTCGCGTGACA
>bc1308
TCGCGACATATAGATG
>bc1309
CTAGTCTCTATCGCAT
>bc1310
CTACGAGACAGATCGC
>bc1311
TGTCTGAGACGCATAC
>bc1312
TGCGAGACTATCGCGA
>bc1313
TATCAGCACGACATGC
>bc1314
AGTCAGATGCGCACTC
>bc1315
ACATGCGTGACAGTCA
>bc1316
AGCGTCTGACGTGAGT
>bc1317
TGTGCACGACAGCAGT
>bc1318
GACTCTCTATCGTACT
>bc1319
ATGCTCACTACTACAT
>bc1320
CAGCAGATCATGTCGA
>bc1321
GATCATGTGAGCATAG
>bc1322
CATCGTCTAGCACTCG
>bc1323
GCACAGCGTAGCGCAT
>bc1324
GACATAGCTAGATCGC
>bc1325
CGTGAGTATATGTCAT
>bc1326
CGACTAGATCTATCAT
>bc1327
TACGCGTGTACGCAGA
>bc1328
TGCGAGCGACTCTATC
>bc1329
ACGCTCGCTGAGCATA
>bc1330
TCACGTGCAGATATAG
>bc1331
CATAGCGACTATCGTG
>bc1332
CATATGCTCGTGCACT
>bc1333
CGTACGTGCGAGTACA
>bc1334
CGACGTCATAGTGCGT
>bc1335
CGCTAGAGATCTGCTA
>bc1336
CTGTAGACATCACACG
>bc1337
AGCTACGCGTGCACTG
>bc1338
CATATCAGTGCTACAG
>bc1339
TAGAGCGTCTCTCGTA
>bc1340
ATCGCTGTGTCTATAG
>bc1341
ATGCTGATGACGCGCT
>bc1342
CTGCGCAGTACGTGCA
>bc1343
AGTGCGCACATGTCAG
>bc1344
CGTGAGTAGTCAGACG
>bc1345
GATCACAGAGATGCTC
>bc1346
TCGAGTGTATAGCTCA
>bc1347
GAGTCTGCACGCGCTA
>bc1348
CGACTACGTACAGTAG
>bc1349
AGCGTAGCATCTGAGC
>bc1350
TACGATCGTAGCTGCT
>bc1351
TCGCGAGCAGCGACAT
>bc1352
ACTATCGCAGCTCAGT
>bc1353
CTGATGCGCGCTGTAC
>bc1354
CGTACGACTGCAGCGT
>bc1355
ATCTGAGTCTGACACG
>bc1356
CTCGAGCAGTAGATAC
>bc1357
GTATCGAGCGTATAGC
>bc1358
GATAGCTGCTAGCTGA
>bc1359
CGAGCTACTCTGACAG
>bc1360
CGTATACAGTCACGCT
>bc1361
ATCGAGCAGCAGTCGT
>bc1362
GCTAGTCGATGACAGC
>bc1363
GTACACGCTGTGACTA
>bc1364
ACGTGTATGACGATAC
>bc1365
CGTGCACATCTATAGC
>bc1366
ACGATCACTCGTGTCA
>bc1367
GCTCTCACGATATCAG
>bc1368
AGTCGCGTAGCTCATC
>bc1369
AGTCACTGTCTACTCG
>bc1370
TGACTCGCTCATAGTC
>bc1371
GTAGTCTCGCACAGAT
>bc1372
GATCGACTCGAGCATC
>bc1373
GATCTCTACTATATGC
>bc1374
CATGATGCGAGACGCT
>bc1375
AGCTCTGTCACTAGAC
>bc1376
CAGTCTGTGAGTCACT
>bc1377
TCGATATACGACGTGC
>bc1378
TCGATACGCACTCGAT
>bc1379
TCAGACGATGCGTCAT
>bc1380
GTCACGATATAGTGAC
>bc1381
ACTACATACTAGATCA
>bc1382
GAGAGTGTGAGAGTGT
>bc1383
ACTCAGCGCGTACATA
>bc1384
CGAGCACGCGCGTGTG
This diff is collapsed.
Click to expand it.
lima_command.txt
+
1
−
1
View file @
b61ca12b
lima --split-named
xxxx.gz
barcodes.fasta
xxxx.demux
.fastq
lima --split-named
raw_hifi_reads.fq.gz Sequel_384_
barcodes
_v1
.fasta
RyiharPL
.fastq
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