diff --git a/Sequel_384_barcodes_v1.fasta b/Sequel_384_barcodes_v1.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e50af66c63097f1714fe2450c27e12134b13fe6c --- /dev/null +++ b/Sequel_384_barcodes_v1.fasta @@ -0,0 +1,768 @@ +>bc1001 +CACATATCAGAGTGCG +>bc1002 +ACACACAGACTGTGAG +>bc1003 +ACACATCTCGTGAGAG +>bc1004 +CACGCACACACGCGCG +>bc1005 +CACTCGACTCTCGCGT +>bc1006 +CATATATATCAGCTGT +>bc1007 +TCTGTATCTCTATGTG +>bc1008 +ACAGTCGAGCGCTGCG +>bc1009 +ACACACGCGAGACAGA +>bc1010 +ACGCGCTATCTCAGAG +>bc1011 +CTATACGTATATCTAT +>bc1012 +ACACTAGATCGCGTGT +>bc1013 +CTCTCGCATACGCGAG +>bc1014 +CTCACTACGCGCGCGT +>bc1015 +CGCATGACACGTGTGT +>bc1016 +CATAGAGAGATAGTAT +>bc1017 +CACACGCGCGCTATAT +>bc1018 +TCACGTGCTCACTGTG +>bc1019 +ACACACTCTATCAGAT +>bc1020 +CACGACACGACGATGT +>bc1021 +CTATACATAGTGATGT +>bc1022 +CACTCACGTGTGATAT +>bc1023 +CAGAGAGATATCTCTG +>bc1024 +CATGTAGAGCAGAGAG +>bc1025 +CGCGACACGCTCGCGC +>bc1026 +CACAGAGACACGCACA +>bc1027 +CTCACACTCTCTCACA +>bc1028 +CTCTGCTCTGACTCTC +>bc1029 +TATATATGTCTATAGA +>bc1030 +TCTCTCTATCGCGCTC +>bc1031 +GATGTCTGAGTGTGTG +>bc1032 +GAGACTAGAGATAGTG +>bc1033 +TCTCGTCGCAGTCTCT +>bc1034 +ATGTGTATATAGATAT +>bc1035 +GCGCGCGCACTCTCTG +>bc1036 +GAGACACGTCGCACAC +>bc1037 +ACACATATCGCACTAC +>bc1038 +GTGTGTCTCGATGCGC +>bc1039 +CGCACACATAGATACA +>bc1040 +TGTCATATGAGAGTGT +>bc1041 +TCTCGCGCGTGCACGC +>bc1042 +CTCGCTCGACGAGCGC +>bc1043 +TATAGAGCTCTACATA +>bc1044 +GCTGAGACGACGCGCG +>bc1045 +ACATATCGTACTCTCT +>bc1046 +GATATATCGAGTATAT +>bc1047 +TGTCATGTGTACACAC +>bc1048 +GTGTGCACTCACACTC +>bc1049 +ACACGTGTGCTCTCTC +>bc1050 +GATATACGCGAGAGAG +>bc1051 +CGTGTCTAGCGCGCGC +>bc1052 +GTGTGAGATATATATC +>bc1053 +CTCACGTACGTCACAC +>bc1054 +GCGCACGCACTACAGA +>bc1055 +CACACGAGATCTCATC +>bc1056 +AGACACACACGCACAT +>bc1057 +GACGAGCGTCTGAGAG +>bc1058 +TGTGTCTCTGAGAGTA +>bc1059 +CACACGCACTGAGATA +>bc1060 +GATGAGTATAGACACA +>bc1061 +GCTGTGTGTGCTCGTC +>bc1062 +TCTCAGATAGTCTATA +>bc1063 +ACACGCATGACACACT +>bc1064 +TATATACAGAGTCGAG +>bc1065 +GCGCTCTCTCACATAC +>bc1066 +TATATGCTCTGTGTGA +>bc1067 +CTCTATATATCTCGTC +>bc1068 +AGAGAGCTCTCTCATC +>bc1069 +GCGAGAGTGAGACGCA +>bc1070 +TGCTCTCGTGTACTGT +>bc1071 +AGCGCTGCGACACGCG +>bc1072 +AGACGCGAGCGCGTAG +>bc1073 +GCGTGTGTCGAGTGTA +>bc1074 +TGTACGCTCTCTATAT +>bc1075 +TAGAGAGCGTCGCGTG +>bc1076 +GTGCACTCGCGCTCTC +>bc1077 +TATCTCTCGAGTCGCG +>bc1078 +CTCACACATACACGTC +>bc1079 +ATAGTACACTCTGTGT +>bc1080 +TATCTCTGTAGAGTCT +>bc1081 +GATATATATGTGTGTA +>bc1082 +GTGACACACAGAGCAC +>bc1083 +ATATGACATACACGCA +>bc1084 +CGTCTCTCGTCTGTGC +>bc1085 +ACACAGTAGAGCGAGC +>bc1086 +GTCGCGCATAGAGCGC +>bc1087 +CTATCTAGCACTCACA +>bc1088 +CGTGTCACTCTGCGTG +>bc1089 +CGCGCGAGTATCTCGT +>bc1090 +AGCACACATATAGCGC +>bc1091 +GTATATATATACGTCT +>bc1092 +TCTCACGAGAGCGCAC +>bc1093 +TAGATGCGAGAGTAGA +>bc1094 +ATAGCGACATCTCTCT +>bc1095 +GCACGATGTCAGCGCG +>bc1096 +TGTGCTCTCTACACAG +>bc1097 +CGTCTCTATCTCTCTA +>bc1098 +GCGCAGTGTCACATCA +>bc1099 +TCTACTACACTGTACT +>bc1100 +TCTATGTCTCAGTAGT +>bc1101 +ATAGCGACGCGATATA +>bc1102 +TCTCTCGATATGATAG +>bc1103 +TATACACACTCGCTCG +>bc1104 +ATATGAGTGACTCGTG +>bc1105 +CACAGTCGCAGTACGC +>bc1106 +CACGACTATATGCTCT +>bc1107 +TAGAGCGTGCATATAT +>bc1108 +ACGACGCGCACTGACA +>bc1109 +CTGTGTGTGATAGAGT +>bc1110 +GAGCGTGTATACAGCG +>bc1111 +TGAGATATGCATGATG +>bc1112 +GTGCGCTACAGTCTCT +>bc1113 +TCACTGTGTGTGTCTG +>bc1114 +GAGAGTAGCGTGTACA +>bc1115 +AGATATCATCAGCGAG +>bc1116 +TGCTGCGAGCGCTCTG +>bc1117 +GTGCATACATACATAT +>bc1118 +AGATACACATGATACT +>bc1119 +TCACATATGTATACAT +>bc1120 +CACTATACACTGCGCT +>bc1121 +CGCTCTGTCACGTCTG +>bc1122 +GCAGACTCTCACACGC +>bc1123 +CACATACTACTACTGA +>bc1124 +TACTCACTGCGCTCAC +>bc1125 +GATGTGTGCGCAGTGC +>bc1126 +GTGTATCAGCGAGTAT +>bc1127 +GTCTACGCTCGTCGCG +>bc1128 +TATACGAGATACGTGA +>bc1129 +CGCGTATGTATGTCGC +>bc1130 +CGTCTATATACGTATA +>bc1131 +GCGCGTGCTGCGTCTA +>bc1132 +CGCGCTCAGCTGATCG +>bc1133 +GCTCGACTGTGAGAGA +>bc1134 +ACAGAGTGTGCAGATA +>bc1135 +CGCACAGATACGCTCT +>bc1136 +TATGACTAGTGTACTA +>bc1137 +ATACACTCATGTGCAC +>bc1138 +TGTCTGATCTGTATCA +>bc1139 +GAGACTCTGTGCGCGT +>bc1140 +CTCTCGTAGACAGATA +>bc1141 +ACATATGTCTGAGACA +>bc1142 +TACATATGTCACGCGC +>bc1143 +GTGAGTATGTACTCTG +>bc1144 +GTCTCTCTCTCACGCA +>bc1145 +TGTCGTCTATCATGTA +>bc1146 +GCTGCGCTGATATGCG +>bc1147 +AGATATACTGTCTGAT +>bc1148 +TGATATATACGCGCGT +>bc1149 +AGTAGACAGAGCGTGA +>bc1150 +ACACTGACGTCGCGAC +>bc1151 +ACTCATGTATATGAGT +>bc1152 +TCGCTGACTCGACACA +>bc1153 +GCTCGCACAGCGCGTC +>bc1154 +GAGCTGATGTACATGT +>bc1155 +TATGTGTCTGCGCATA +>bc1156 +GCGCACAGACATCTGT +>bc1157 +TGAGTGAGACATATCA +>bc1158 +CATCGCGAGTGCGCTC +>bc1159 +TCATACACACAGATAG +>bc1160 +TAGCGTGAGAGTGTCG +>bc1161 +ACAGTAGACTCTCAGA +>bc1162 +GTGACAGACGTCACGC +>bc1163 +GTGACTCTATGCTATA +>bc1164 +TCTGTCGATATACACT +>bc1165 +AGAGATGTGTGATGAC +>bc1166 +CTGTGCTATGTACGCG +>bc1167 +CAGCGCATCTCACGTC +>bc1168 +GTGCAGTGATCGATGA +>bc1169 +GACACTCGCATGTGCG +>bc1170 +ATATAGCGCATAGCTC +>bc1171 +GTCTGTATAGCTATCT +>bc1172 +CGTGTCGCGCATATCT +>bc1173 +GTCTATCTCGCGAGAG +>bc1174 +CACTACTAGCGTGTGC +>bc1175 +TACTCATATATGCTAC +>bc1176 +AGACACGAGTCTAGAT +>bc1177 +TGTGTATCAGTACATG +>bc1178 +GTGCGCGAGAGTATAC +>bc1179 +AGCGACGCGAGAGTGC +>bc1180 +GCGCTAGTGTGTACGA +>bc1181 +TGCATAGTAGTGCTCT +>bc1182 +GACAGCATCTGCGCTC +>bc1183 +TACACACTATGTGCGT +>bc1184 +ACTCGCGCACGCGCGA +>bc1185 +GATACGAGAGCTGATG +>bc1186 +CATCGTCACAGACATA +>bc1187 +ATAGAGAGTGTCTCAG +>bc1188 +ACAGTACTAGTGCGAG +>bc1189 +CTCGTGACGCTGACTG +>bc1190 +TGCGAGCGTGCACAGA +>bc1191 +CACATGTGACTCGACG +>bc1192 +TGTCTCGTGCTGAGAC +>bc1193 +ATACGCGCGCGCATGC +>bc1194 +CTCTGACTCGCGTCGA +>bc1195 +CGAGCATATATATCTC +>bc1196 +GTGTAGCGTAGACAGT +>bc1197 +ACGACATCGCTCACAG +>bc1198 +CATGCTACGTCTCTGT +>bc1199 +ATGATGTGCTACATCT +>bc1200 +GCACTCAGAGACGCGA +>bc1201 +CTATATGAGACGAGTG +>bc1202 +TCAGATGTGTCGCGAG +>bc1203 +CTCTACATCAGTGCTA +>bc1204 +AGATGTCATGTCTCTA +>bc1205 +GTGAGAGTCTGATACT +>bc1206 +GCGAGACTCAGCTCTG +>bc1207 +TACATGTGTCTATGTC +>bc1208 +ATCGTATAGTCATACA +>bc1209 +GTGATGCATACGTACA +>bc1210 +AGTAGTGTGATACTAG +>bc1211 +ATGATACACGCGCGAC +>bc1212 +TGTAGACTAGCGCTGC +>bc1213 +ACTGCGAGATACACAC +>bc1214 +ATCTCTGTGCGCGCAG +>bc1215 +ACGACAGTCAGAGTAT +>bc1216 +CAGATCTCTCTGATGT +>bc1217 +TGACATCTACACATAC +>bc1218 +GTAGAGTGATCGCGTC +>bc1219 +ATGAGTCTCACTGTAT +>bc1220 +CTGTGTGCTCGCTATG +>bc1221 +ACGTAGTGCACACAGA +>bc1222 +TATCTATCGCATATCG +>bc1223 +TGCTCGCAGTATCACA +>bc1224 +TGTATGAGTGTCTGAC +>bc1225 +AGTCTGCGAGACAGAG +>bc1226 +GACGACAGACTGCATA +>bc1227 +GACGTGTCGTAGATAT +>bc1228 +ACTCTCGCTCTGTAGA +>bc1229 +ACAGTATGATGTACTC +>bc1230 +GAGCTCATGTAGACAC +>bc1231 +TATCTGAGCGCGAGCA +>bc1232 +GAGATCGACAGTCTCG +>bc1233 +GTGCGTATGTCGCTAC +>bc1234 +AGCACAGTCACATGTC +>bc1235 +CTAGACACGCAGTCAC +>bc1236 +ATAGAGACTCAGAGCT +>bc1237 +GAGTCTCGATATACTA +>bc1238 +CTGTGTATCTGTGTAC +>bc1239 +GATATCTCGATCTCTG +>bc1240 +TCTCATGTGTGAGCTA +>bc1241 +CGCTCATATGAGCTCA +>bc1242 +CACTCGTGCACGATGC +>bc1243 +GTCTCATCATGCTGCG +>bc1244 +ACTCTGCTGTCATCGC +>bc1245 +CGCTGCGAGAGACAGT +>bc1246 +GCGATACACAGTCGCA +>bc1247 +CTGCGTATAGATATGA +>bc1248 +CATGTGCGCTCATCAC +>bc1249 +ATCTACGACTAGCAGA +>bc1250 +GACTGCACATGCACGA +>bc1251 +TACACAGCATCTCGCA +>bc1252 +AGCACGTGTGTCGACA +>bc1253 +GACACTCAGTCTCTCA +>bc1254 +TGTCACTCATCTGAGT +>bc1255 +TCTACTGCATGATGTC +>bc1256 +GTCTGATAGATACAGA +>bc1257 +TCACACTGTGCGAGAC +>bc1258 +GCACACATATCTGATG +>bc1259 +GTATAGCACTCGAGCG +>bc1260 +GCGCGATACGATGACT +>bc1261 +ACACGTGATAGCTACG +>bc1262 +TACATCTCGCTGCGCA +>bc1263 +CGTAGCTCGAGATGAG +>bc1264 +AGATCGCGCATGTGTA +>bc1265 +ATCTCGAGATGTAGCG +>bc1266 +GACACAGTGTGTAGTC +>bc1267 +GTCAGAGCTCTCGTGC +>bc1268 +TCTATCAGCGCTGATG +>bc1269 +CGTCTAGATAGAGATG +>bc1270 +ACAGTGCGCTGTCTAT +>bc1271 +CTGTACTAGAGCGTCT +>bc1272 +CGCATATCTCACTAGT +>bc1273 +ATACGCATATCGCAGT +>bc1274 +ACTCATCACGTCTCGA +>bc1275 +CTATACATGACTCTGC +>bc1276 +CTCGCACGTCGCATAG +>bc1277 +TCAGAGACACTACGAG +>bc1278 +ACTCTATGTCGATGTA +>bc1279 +GAGATACGCTGCAGTC +>bc1280 +CATCACTACGCTAGAT +>bc1281 +CTACGATGCTATGTAT +>bc1282 +AGCGTAGCGCGCGTCA +>bc1283 +AGTCGAGATATACAGT +>bc1284 +CACGTGCTCGAGAGTC +>bc1285 +AGTCACACGCACGCTG +>bc1286 +CGCATCTGTGCATGCA +>bc1287 +TCAGCGCACTGTGCTG +>bc1288 +GATCTGTCGTGAGCGT +>bc1289 +ACGTGAGCTCACTCGC +>bc1290 +CAGTGAGAGCGCGATA +>bc1291 +TGACAGTATCACAGTG +>bc1292 +TAGATCTATCATCGTC +>bc1293 +AGTCTGAGAGAGCTAT +>bc1294 +ACGTCAGCACTGCTCT +>bc1295 +CATACATCGCGCAGTA +>bc1296 +GACTCGCGATACTAGA +>bc1297 +TACTAGAGTAGCACTC +>bc1298 +CGAGTGTGTCTATACT +>bc1299 +ATCGCATCGCAGAGAC +>bc1300 +GTATAGACAGATGTGC +>bc1301 +GCGATCACTGTACACT +>bc1302 +ACAGTCTATACTGCTG +>bc1303 +ACTGTGACAGTATGAT +>bc1304 +ACGTGCTCTATAGAGA +>bc1305 +TAGTGTGCGACTCTGA +>bc1306 +TGCTATCTGAGATACT +>bc1307 +CAGATCTCGCGTGACA +>bc1308 +TCGCGACATATAGATG +>bc1309 +CTAGTCTCTATCGCAT +>bc1310 +CTACGAGACAGATCGC +>bc1311 +TGTCTGAGACGCATAC +>bc1312 +TGCGAGACTATCGCGA +>bc1313 +TATCAGCACGACATGC +>bc1314 +AGTCAGATGCGCACTC +>bc1315 +ACATGCGTGACAGTCA +>bc1316 +AGCGTCTGACGTGAGT +>bc1317 +TGTGCACGACAGCAGT +>bc1318 +GACTCTCTATCGTACT +>bc1319 +ATGCTCACTACTACAT +>bc1320 +CAGCAGATCATGTCGA +>bc1321 +GATCATGTGAGCATAG +>bc1322 +CATCGTCTAGCACTCG +>bc1323 +GCACAGCGTAGCGCAT +>bc1324 +GACATAGCTAGATCGC +>bc1325 +CGTGAGTATATGTCAT +>bc1326 +CGACTAGATCTATCAT +>bc1327 +TACGCGTGTACGCAGA +>bc1328 +TGCGAGCGACTCTATC +>bc1329 +ACGCTCGCTGAGCATA +>bc1330 +TCACGTGCAGATATAG +>bc1331 +CATAGCGACTATCGTG +>bc1332 +CATATGCTCGTGCACT +>bc1333 +CGTACGTGCGAGTACA +>bc1334 +CGACGTCATAGTGCGT +>bc1335 +CGCTAGAGATCTGCTA +>bc1336 +CTGTAGACATCACACG +>bc1337 +AGCTACGCGTGCACTG +>bc1338 +CATATCAGTGCTACAG +>bc1339 +TAGAGCGTCTCTCGTA +>bc1340 +ATCGCTGTGTCTATAG +>bc1341 +ATGCTGATGACGCGCT +>bc1342 +CTGCGCAGTACGTGCA +>bc1343 +AGTGCGCACATGTCAG +>bc1344 +CGTGAGTAGTCAGACG +>bc1345 +GATCACAGAGATGCTC +>bc1346 +TCGAGTGTATAGCTCA +>bc1347 +GAGTCTGCACGCGCTA +>bc1348 +CGACTACGTACAGTAG +>bc1349 +AGCGTAGCATCTGAGC +>bc1350 +TACGATCGTAGCTGCT +>bc1351 +TCGCGAGCAGCGACAT +>bc1352 +ACTATCGCAGCTCAGT +>bc1353 +CTGATGCGCGCTGTAC +>bc1354 +CGTACGACTGCAGCGT +>bc1355 +ATCTGAGTCTGACACG +>bc1356 +CTCGAGCAGTAGATAC +>bc1357 +GTATCGAGCGTATAGC +>bc1358 +GATAGCTGCTAGCTGA +>bc1359 +CGAGCTACTCTGACAG +>bc1360 +CGTATACAGTCACGCT +>bc1361 +ATCGAGCAGCAGTCGT +>bc1362 +GCTAGTCGATGACAGC +>bc1363 +GTACACGCTGTGACTA +>bc1364 +ACGTGTATGACGATAC +>bc1365 +CGTGCACATCTATAGC +>bc1366 +ACGATCACTCGTGTCA +>bc1367 +GCTCTCACGATATCAG +>bc1368 +AGTCGCGTAGCTCATC +>bc1369 +AGTCACTGTCTACTCG +>bc1370 +TGACTCGCTCATAGTC +>bc1371 +GTAGTCTCGCACAGAT +>bc1372 +GATCGACTCGAGCATC +>bc1373 +GATCTCTACTATATGC +>bc1374 +CATGATGCGAGACGCT +>bc1375 +AGCTCTGTCACTAGAC +>bc1376 +CAGTCTGTGAGTCACT +>bc1377 +TCGATATACGACGTGC +>bc1378 +TCGATACGCACTCGAT +>bc1379 +TCAGACGATGCGTCAT +>bc1380 +GTCACGATATAGTGAC +>bc1381 +ACTACATACTAGATCA +>bc1382 +GAGAGTGTGAGAGTGT +>bc1383 +ACTCAGCGCGTACATA +>bc1384 +CGAGCACGCGCGTGTG diff --git a/lima_command.txt b/lima_command.txt index a3d264dfafa62ea0e3f9640e433b15ac7db3bdd0..6b8ff68bced34e285debefb6442ab4d01b3e7702 100644 --- a/lima_command.txt +++ b/lima_command.txt @@ -1 +1 @@ -lima --split-named xxxx.gz barcodes.fasta xxxx.demux.fastq +lima --split-named raw_hifi_reads.fq.gz Sequel_384_barcodes_v1.fasta RyiharPL.fastq