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- Shannon_diversity_figures/ndvi_shannon_all.png 0 additions, 0 deletionsShannon_diversity_figures/ndvi_shannon_all.png
- analysis/16S/16S_Analysis_pipeline_v4-3.Rmd 8 additions, 15 deletionsanalysis/16S/16S_Analysis_pipeline_v4-3.Rmd
- analysis/16S/16S_Analysis_pipeline_v4-3.html 3073 additions, 0 deletionsanalysis/16S/16S_Analysis_pipeline_v4-3.html
- analysis/16S/16S_DADA2_results_260821/ASV_custom_BLAST_taxonomy.fasta 0 additions, 0 deletions.../16S_DADA2_results_260821/ASV_custom_BLAST_taxonomy.fasta
- analysis/16S/16S_DADA2_results_260821/ASVs_raw.fasta 0 additions, 0 deletionsanalysis/16S/16S_DADA2_results_260821/ASVs_raw.fasta
- analysis/16S/16S_DADA2_results_260821/Blast_lineage_headers_generic.Rmd 0 additions, 0 deletions...6S_DADA2_results_260821/Blast_lineage_headers_generic.Rmd
- analysis/16S/16S_DADA2_results_260821/analysis_output/Controls.pdf 0 additions, 0 deletions...16S/16S_DADA2_results_260821/analysis_output/Controls.pdf
- analysis/16S/16S_DADA2_results_260821/analysis_output/Customized_NDVI_Shannon_plot.pdf 0 additions, 0 deletions...s_260821/analysis_output/Customized_NDVI_Shannon_plot.pdf
- analysis/16S/16S_DADA2_results_260821/analysis_output/Overview_all_and_pruned.pdf 0 additions, 0 deletions...esults_260821/analysis_output/Overview_all_and_pruned.pdf
- analysis/16S/16S_DADA2_results_260821/analysis_output/Top100_ASVs.pdf 0 additions, 0 deletions.../16S_DADA2_results_260821/analysis_output/Top100_ASVs.pdf
- analysis/16S/16S_DADA2_results_260821/analysis_output/Top100_Genus.pdf 0 additions, 0 deletions...16S_DADA2_results_260821/analysis_output/Top100_Genus.pdf
- analysis/16S/16S_DADA2_results_260821/blastnt-dbAp21_ASVs_raw.txt 0 additions, 0 deletions.../16S/16S_DADA2_results_260821/blastnt-dbAp21_ASVs_raw.txt
- analysis/16S/16S_DADA2_results_260821/controls_phylotree.rds 0 additions, 0 deletionsanalysis/16S/16S_DADA2_results_260821/controls_phylotree.rds
- analysis/16S/16S_DADA2_results_260821/custom_BLAST_taxonomy_nt.txt 0 additions, 0 deletions...16S/16S_DADA2_results_260821/custom_BLAST_taxonomy_nt.txt
- analysis/16S/16S_DADA2_results_260821/descriptors.txt 0 additions, 0 deletionsanalysis/16S/16S_DADA2_results_260821/descriptors.txt
- analysis/16S/16S_DADA2_results_260821/descriptors_blank.txt 0 additions, 0 deletionsanalysis/16S/16S_DADA2_results_260821/descriptors_blank.txt
- analysis/16S/16S_DADA2_results_260821/mergers.txt 0 additions, 0 deletionsanalysis/16S/16S_DADA2_results_260821/mergers.txt
- analysis/16S/16S_DADA2_results_260821/out.txt 0 additions, 0 deletionsanalysis/16S/16S_DADA2_results_260821/out.txt
- analysis/16S/16S_DADA2_results_260821/seqtab.nochim.txt 0 additions, 0 deletionsanalysis/16S/16S_DADA2_results_260821/seqtab.nochim.txt
- analysis/16S/16S_DADA2_results_260821/seqtab.rds 0 additions, 0 deletionsanalysis/16S/16S_DADA2_results_260821/seqtab.rds
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