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analysis file transfer
transfer of intermediate and analysis files from internal repository
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- 2023-04-plotting-ndvi-shannon.Rmd 150 additions, 0 deletions2023-04-plotting-ndvi-shannon.Rmd
- ENA submission/ENA_read_submission.tsv 0 additions, 168 deletionsENA submission/ENA_read_submission.tsv
- ENA submission/ena_parser.Rmd 0 additions, 76 deletionsENA submission/ena_parser.Rmd
- ENA submission/fastq2_template_1729686589164.tsv 0 additions, 2 deletionsENA submission/fastq2_template_1729686589164.tsv
- Shannon_diversity_figures/ndvi_shannon_all.pdf 0 additions, 0 deletionsShannon_diversity_figures/ndvi_shannon_all.pdf
- Shannon_diversity_figures/ndvi_shannon_all.png 0 additions, 0 deletionsShannon_diversity_figures/ndvi_shannon_all.png
- Supplementary_table_S3.xlsx 0 additions, 0 deletionsSupplementary_table_S3.xlsx
- Table_2.xlsx 0 additions, 0 deletionsTable_2.xlsx
- dada2_outputs/16S/16S_Analysis_pipeline_v4-3.Rmd 1030 additions, 0 deletionsdada2_outputs/16S/16S_Analysis_pipeline_v4-3.Rmd
- dada2_outputs/16S/16S_Analysis_pipeline_v4-3.html 2148 additions, 0 deletionsdada2_outputs/16S/16S_Analysis_pipeline_v4-3.html
- dada2_outputs/16S/16S_DADA2_results_260821/ASV_custom_BLAST_taxonomy.fasta 9201 additions, 0 deletions.../16S_DADA2_results_260821/ASV_custom_BLAST_taxonomy.fasta
- dada2_outputs/16S/16S_DADA2_results_260821/ASVs_raw.fasta 9201 additions, 0 deletionsdada2_outputs/16S/16S_DADA2_results_260821/ASVs_raw.fasta
- dada2_outputs/16S/16S_DADA2_results_260821/Blast_lineage_headers_generic.Rmd 134 additions, 0 deletions...6S_DADA2_results_260821/Blast_lineage_headers_generic.Rmd
- dada2_outputs/16S/16S_DADA2_results_260821/blastnt-dbAp21_ASVs_raw.txt 0 additions, 0 deletions.../16S/16S_DADA2_results_260821/blastnt-dbAp21_ASVs_raw.txt
- dada2_outputs/16S/16S_DADA2_results_260821/controls_phylotree.rds 0 additions, 0 deletions...tputs/16S/16S_DADA2_results_260821/controls_phylotree.rds
- dada2_outputs/16S/16S_DADA2_results_260821/custom_BLAST_taxonomy_nt.txt 1849 additions, 0 deletions...16S/16S_DADA2_results_260821/custom_BLAST_taxonomy_nt.txt
- dada2_outputs/16S/16S_DADA2_results_260821/descriptors.txt 27 additions, 0 deletionsdada2_outputs/16S/16S_DADA2_results_260821/descriptors.txt
- dada2_outputs/16S/16S_DADA2_results_260821/descriptors_blank.txt 27 additions, 0 deletions...utputs/16S/16S_DADA2_results_260821/descriptors_blank.txt
- dada2_outputs/16S/16S_DADA2_results_260821/mergers.txt 5425 additions, 0 deletionsdada2_outputs/16S/16S_DADA2_results_260821/mergers.txt
- dada2_outputs/16S/16S_DADA2_results_260821/out.txt 29 additions, 0 deletionsdada2_outputs/16S/16S_DADA2_results_260821/out.txt
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