diff --git a/NAMESPACE b/NAMESPACE index 3b5b311b629a32f00a8b6ff9e1d1920f3bdceaae..a87f056f501f1c60e45a81cd45614b666e44e587 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -50,7 +50,6 @@ import(DECIPHER) import(GenomicRanges) import(ape) import(cowplot) -import(dplyr) import(ggdendro) import(ggtree) import(phangorn) diff --git a/R/meshclustR.R b/R/meshclustR.R index 529dd1ac2e7c6445f1b83f75e797aed0cd2ea4cd..53f2fc53f440f9c9ed46a7fc25dd6c6b3703bed7 100644 --- a/R/meshclustR.R +++ b/R/meshclustR.R @@ -19,7 +19,6 @@ #' meshclustR(seqs = MyDNAStringSet, meshclust_bin = meshclust, filepath = path) #' @import Biostrings #' @import tidyverse -#' @import dplyr #' @export meshclustR <- function(seqs = MyDNAStringSet, meshclust_bin = meshclust, @@ -42,7 +41,7 @@ meshclustR <- function(seqs = MyDNAStringSet, col_names = c('cluster', 'seqnames', 'identity_with_center', 'cluster_class'), col_types = 'fcdc') %>% - mutate(seqnames = str_remove(seqnames, '>')) + dplyr::mutate(seqnames = str_remove(seqnames, '>')) #clean up temp file and output file file.remove(temp_file, out_file)