First commit

.gitignore

+target/
+classes/

nb-configuration.xml

+<?xml version="1.0" encoding="UTF-8"?>
+<project-shared-configuration>
+    <!--
+This file contains additional configuration written by modules in the NetBeans IDE.
+The configuration is intended to be shared among all the users of project and
+therefore it is assumed to be part of version control checkout.
+Without this configuration present, some functionality in the IDE may be limited or fail altogether.
+-->
+    <properties xmlns="http://www.netbeans.org/ns/maven-properties-data/1">
+        <!--
+Properties that influence various parts of the IDE, especially code formatting and the like. 
+You can copy and paste the single properties, into the pom.xml file and the IDE will pick them up.
+That way multiple projects can share the same settings (useful for formatting rules for example).
+Any value defined here will override the pom.xml file value but is only applicable to the current project.
+-->
+        <netbeans.hint.license>nibio_open_source_license.ftl</netbeans.hint.license>
+    </properties>
+</project-shared-configuration>

pom.xml

+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+    <modelVersion>4.0.0</modelVersion>
+    <groupId>no.nibio.vips.model</groupId>
+    <artifactId>MamestraBrassicaeModel</artifactId>
+    <version>1.0-SNAPSHOT</version>
+    <packaging>jar</packaging>
+    <dependencies>
+        <dependency>
+            <groupId>no.nibio.vips.common</groupId>
+            <artifactId>VIPSCommon</artifactId>
+            <version>1.0-SNAPSHOT</version>
+        </dependency>
+        <dependency>
+            <groupId>junit</groupId>
+            <artifactId>junit</artifactId>
+            <version>4.12</version>
+            <scope>test</scope>
+        </dependency>
+        <dependency>
+            <groupId>org.hamcrest</groupId>
+            <artifactId>hamcrest-core</artifactId>
+            <version>1.3</version>
+            <scope>test</scope>
+        </dependency>
+    </dependencies>
+    <properties>
+        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
+        <maven.compiler.source>1.7</maven.compiler.source>
+        <maven.compiler.target>1.7</maven.compiler.target>
+    </properties>
+</project>
\ No newline at end of file

src/main/java/no/nibio/vips/model/mamestrabrassicaemodel/DataMatrix.java

+/*
+ * Copyright (c) 2016 NIBIO <http://www.nibio.no/>. 
+ * 
+ * This file is part of MamestraBrassicaeModel.
+ * MamestraBrassicaeModel is free software: you can redistribute it and/or modify
+ * it under the terms of the NIBIO Open Source License as published by 
+ * NIBIO, either version 1 of the License, or (at your option) any
+ * later version.
+ * 
+ * MamestraBrassicaeModel is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * NIBIO Open Source License for more details.
+ * 
+ * You should have received a copy of the NIBIO Open Source License
+ * along with MamestraBrassicaeModel.  If not, see <http://www.nibio.no/licenses/>.
+ * 
+ */
+
+package no.nibio.vips.model.mamestrabrassicaemodel;
+
+import no.nibio.vips.util.DateMap;
+
+/**
+ * @copyright 2016 <a href="http://www.nibio.no/">NIBIO</a>
+ * @author Tor-Einar Skog <tor-einar.skog@nibio.no>
+ */
+public class DataMatrix extends DateMap{
+    public final static String TMD = "TMD";
+    public final static String TJM10D = "TJM10D";
+}

src/main/java/no/nibio/vips/model/mamestrabrassicaemodel/MamestraBrassicaeModel.java

+/*
+ * Copyright (c) 2016 NIBIO <http://www.nibio.no/>. 
+ * 
+ * This file is part of MamestraBrassicaeModel.
+ * MamestraBrassicaeModel is free software: you can redistribute it and/or modify
+ * it under the terms of the NIBIO Open Source License as published by 
+ * NIBIO, either version 1 of the License, or (at your option) any
+ * later version.
+ * 
+ * MamestraBrassicaeModel is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * NIBIO Open Source License for more details.
+ * 
+ * You should have received a copy of the NIBIO Open Source License
+ * along with MamestraBrassicaeModel.  If not, see <http://www.nibio.no/licenses/>.
+ * 
+ */
+
+package no.nibio.vips.model.mamestrabrassicaemodel;
+
+import com.fasterxml.jackson.core.type.TypeReference;
+import com.fasterxml.jackson.databind.ObjectMapper;
+import java.io.IOException;
+import java.text.DecimalFormat;
+import java.util.ArrayList;
+import java.util.Calendar;
+import java.util.Date;
+import java.util.List;
+import java.util.TimeZone;
+import no.nibio.vips.entity.ModelConfiguration;
+import no.nibio.vips.entity.Result;
+import no.nibio.vips.entity.ResultImpl;
+import no.nibio.vips.entity.WeatherObservation;
+import no.nibio.vips.i18n.I18nImpl;
+import no.nibio.vips.model.ConfigValidationException;
+import no.nibio.vips.model.Model;
+import no.nibio.vips.model.ModelExcecutionException;
+import no.nibio.vips.model.ModelId;
+import no.nibio.vips.util.CommonNamespaces;
+import no.nibio.vips.util.InvalidAggregationTypeException;
+import no.nibio.vips.util.ModelUtil;
+import no.nibio.vips.util.WeatherElements;
+import no.nibio.vips.util.WeatherObservationListException;
+import no.nibio.vips.util.WeatherUtil;
+
+/**
+ * Forecasting model for Mamestra brassicae (NO: Kålfly)
+ * @copyright 2016 <a href="http://www.nibio.no/">NIBIO</a>
+ * @author Tor-Einar Skog <tor-einar.skog@nibio.no>
+ */
+public class MamestraBrassicaeModel extends I18nImpl implements Model{
+    public final static ModelId MODEL_ID = new ModelId("MAMESTRABR");
+    private final ModelUtil modelUtil;
+    
+    // Model constants
+    private final static Integer THRESHOLD_TMDD_PUPAE = 129;
+    private final static Integer THRESHOLD_TMDD_EGG_DEPOSIT = 56;
+    private final static Integer THRESHOLD_TMDD_EGG_HATCH = 75;
+    private final static Integer THRESHOLD_TMDD_LARVAE_1 = 66;
+    private final static Integer THRESHOLD_TMDD_LARVAE_2 = 49;
+    private final static Integer THRESHOLD_TMDD_LARVAE_3 = 53;
+    private final static Integer THRESHOLD_TMDD_LARVAE_4 = 67;
+    private final static Integer THRESHOLD_TMDD_LARVAE_5 = 62;
+    private final static Double T0_PUPAE = 7.5; // Day degree base temp phase 1
+    private final static Double T0_EGG_DEPOSIT = 5.0; // Day degree base temp phase 2
+    private final static Double T0_EGG_HATCH = 8.6; // Day degree base temp phase 3a
+    private final static Double T0_L1 = 7.7; // Day degree base temp phase 3b
+    private final static Double T0_L2 = 6.9; // Day degree base temp phase 4a
+    private final static Double T0_L3 = 6.3; // Day degree base temp phase 4b
+    private final static Double T0_L4 = 4.3; // Day degree base temp phase 5a
+    private final static Double T0_L5 = 6.0; // Day degree base temp phase 5b
+    
+    // Collections
+    private List<WeatherObservation> TJM10;
+    private List<WeatherObservation> TM;
+    private DataMatrix dataMatrix;
+    
+    // Other globals
+    private TimeZone timeZone;
+
+    public MamestraBrassicaeModel()
+    {
+        super("no.nibio.vips.model.mamestrabrassicaemodel.texts");
+        this.modelUtil = new ModelUtil();
+    }
+    
+    @Override
+    public List<Result> getResult() throws ModelExcecutionException {
+        
+        Double accumulatedDayDegrees = 0.0;
+        Date currentDate = this.dataMatrix.getFirstDateWithParameterValue(DataMatrix.TJM10D);
+        Date endDate = this.dataMatrix.getLastDateWithParameterValue(DataMatrix.TMD);
+        DecimalFormat dFormat = new DecimalFormat("###.##");
+        List<Result> retVal = new ArrayList<>();
+        Calendar cal = Calendar.getInstance(timeZone);
+        while(currentDate.before(endDate))
+        {
+            Double baseTemp = this.findT0(accumulatedDayDegrees);
+            Double todayTemp = accumulatedDayDegrees < THRESHOLD_TMDD_PUPAE ? 
+                    ((WeatherObservation)this.dataMatrix.getParamValueForDate(currentDate, DataMatrix.TJM10D)).getValue()
+                    : ((WeatherObservation)this.dataMatrix.getParamValueForDate(currentDate, DataMatrix.TMD)).getValue();
+           
+            accumulatedDayDegrees += Math.max(0, todayTemp - baseTemp);
+            
+            
+            
+            Result result = new ResultImpl();
+            result.setResultValidTime(currentDate);
+            result.setWarningStatus(this.getWarningStatus(accumulatedDayDegrees));
+            this.setAllThresholds(result);
+            
+            result.setValue(this.getModelId().toString(),"TMDD", dFormat.format(accumulatedDayDegrees));
+            
+            // Set input data
+            result.setValue(CommonNamespaces.NS_WEATHER, "TJM10D", dFormat.format(((WeatherObservation)this.dataMatrix.getParamValueForDate(currentDate, DataMatrix.TJM10D)).getValue()));
+            result.setValue(CommonNamespaces.NS_WEATHER, "TMD", dFormat.format(((WeatherObservation)this.dataMatrix.getParamValueForDate(currentDate, DataMatrix.TMD)).getValue()));
+            
+            retVal.add(result);
+            cal.setTime(currentDate);
+            cal.add(Calendar.DATE, 1);
+            currentDate = cal.getTime();
+        }
+        return retVal;
+    }
+
+    @Override
+    public ModelId getModelId() {
+        return MamestraBrassicaeModel.MODEL_ID;
+    }
+
+    @Override
+    public String getModelName() {
+        return this.getModelName(Model.DEFAULT_LANGUAGE);
+    }
+
+    @Override
+    public String getModelName(String language) {
+        return this.getText("name", language);
+    }
+
+    @Override
+    public String getLicense() {
+        return "Copyright (c) 2016 NIBIO <http://www.nibio.no/>. \n" +
+            "\n" +
+            "This file is part of LygusRugulipennisModel. \n" + 
+            "MamestraBrassicaeModel is free software: you can redistribute it and/or modify \n" + 
+            "it under the terms of the NIBIO Open Source License as published by \n" + 
+            "NIBIO, either version 1 of the License, or (at your option) any \n" +
+            "later version. \n" +
+            "\n" +
+            "MamestraBrassicaeModel is distributed in the hope that it will be useful, \n" +
+            "but WITHOUT ANY WARRANTY; without even the implied warranty of \n" +
+            "MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the \n" +
+            "NIBIO Open Source License for more details. \n" +
+            "" +
+            "You should have received a copy of the NIBIO Open Source License \n" +
+            "along with MamestraBrassicaeModel.  If not, see <http://www.nibio.no/licenses/>. \n";
+    }
+
+    @Override
+    public String getCopyright() {
+        return "(c) 2016 NIBIO (http://www.nibio.no/). Contact: post@nibio.no";
+    }
+
+    @Override
+    public String getModelDescription() {
+        return this.getModelDescription(Model.DEFAULT_LANGUAGE);
+    }
+
+    @Override
+    public String getModelDescription(String language) {
+        try
+        {
+            return this.modelUtil.getTextWithBase64EncodedImages(this.getText("description", language), this.getClass());
+        }
+        catch(IOException ex)
+        {
+            return this.getText("description", language);
+        }
+    }
+
+    @Override
+    public String getWarningStatusInterpretation() {
+        return this.getWarningStatusInterpretation(Model.DEFAULT_LANGUAGE);
+    }
+
+    @Override
+    public String getWarningStatusInterpretation(String language) {
+        return this.getText("statusInterpretation", language);
+    }
+
+    @Override
+    public String getModelUsage() {
+        return this.getModelUsage(Model.DEFAULT_LANGUAGE);
+    }
+
+    @Override
+    public String getModelUsage(String language) {
+        return this.getText("usage", language);
+    }
+
+    @Override
+    public String getSampleConfig() {
+        return  "{\n" +
+                "\t\"loginInfo\":{\n" +
+                "\t\t\"username\":\"example\",\n" +
+                "\t\t\"password\":\"example\"\n" +
+                "\t},\n" +
+                "\t\"modelId\":\"" + MODEL_ID.toString() + "\",\n" +
+                "\t\"configParameters\":{\n" +
+                "\t\t\"observations\":[\n" +
+                "\t\t{\n" +
+                "\t\t\t\t\"timeMeasured\": \"2015-01-01T00:00:00+02:00\",\n" +
+                "\t\t\t\t\"elementMeasurementTypeId\":\"TM\",\n" +
+                "\t\t\t\t\"logIntervalId\":2,\n" +
+                "\t\t\t\t\"value\":1.1\n" +
+                "\t\t},\n" +
+                "\t\t{\n" +
+                "\t\t\t\t\"timeMeasured\": \"2015-01-01T00:00:00+02:00\",\n" +
+                "\t\t\t\t\"elementMeasurementTypeId\":\"TJM10\",\n" +
+                "\t\t\t\t\"logIntervalId\":2,\n" +
+                "\t\t\t\t\"value\":0.9\n" +
+                "\t\t}\n" +
+                "\t\t]\n" +
+                "\t}\n" +
+                "}\n";
+    }
+
+    @Override
+    public void setConfiguration(ModelConfiguration config) throws ConfigValidationException {
+        // Initialize the weather data collections
+        this.TM = new ArrayList<>();
+        this.TJM10 = new ArrayList<>();
+        // Init data matrix
+        this.dataMatrix = new DataMatrix();
+        
+        ObjectMapper mapper = new ObjectMapper();
+        
+        // Setting timezone
+        this.timeZone = TimeZone.getTimeZone((String) config.getConfigParameter("timeZone"));
+        //System.out.println("TimeZone=" + this.timeZone);
+        
+        // Importing weather data, creating collections
+        // Can accept both hourly and daily data
+        WeatherUtil wUtil = new WeatherUtil();
+        List<WeatherObservation> observations = mapper.convertValue(config.getConfigParameter("observations"), new TypeReference<List<WeatherObservation>>(){});
+        for(WeatherObservation o:observations)
+        {
+            switch(o.getElementMeasurementTypeId())
+            {
+                case WeatherElements.TEMPERATURE_MEAN:
+                    if(o.getLogIntervalId().equals(WeatherObservation.LOG_INTERVAL_ID_1H))
+                    {
+                        this.TM.add(o);
+                    }else {
+                        o.setTimeMeasured(wUtil.pragmaticAdjustmentToMidnight(o.getTimeMeasured(), timeZone));
+                        this.dataMatrix.setParamValueForDate(o.getTimeMeasured(), DataMatrix.TMD, o);
+                    }break;
+                case WeatherElements.SOIL_TEMPERATURE_10CM_MEAN:
+                    if(o.getLogIntervalId().equals(WeatherObservation.LOG_INTERVAL_ID_1H))
+                    {
+                        this.TJM10.add(o);
+                    }else {
+                        o.setTimeMeasured(wUtil.pragmaticAdjustmentToMidnight(o.getTimeMeasured(), timeZone));
+                        this.dataMatrix.setParamValueForDate(o.getTimeMeasured(), DataMatrix.TJM10D, o);
+                    }break;
+                default:
+                    // Keep calm and continue importing data
+                    break;
+            }
+        }
+        
+        // If we've received hourly weather data, create and store daily values
+        // Air temperature
+        if(dataMatrix.getFirstDateWithParameterValue(DataMatrix.TMD) == null)
+        {
+            try {
+                List<WeatherObservation> dailyTemperatures = new WeatherUtil().getAggregatedDailyValues(
+                        this.TM,
+                        this.timeZone,
+                        15,
+                        WeatherUtil.AGGREGATION_TYPE_AVERAGE);
+                for(WeatherObservation obs:dailyTemperatures)
+                {
+                    this.dataMatrix.setParamValueForDate(obs.getTimeMeasured(), DataMatrix.TMD, obs);
+                }
+            } catch (WeatherObservationListException | InvalidAggregationTypeException ex) {
+                throw new ConfigValidationException(ex.getMessage());
+            }
+        }
+        // Soil temperature
+        if(dataMatrix.getFirstDateWithParameterValue(DataMatrix.TJM10D) == null)
+        {
+            try {
+                List<WeatherObservation> dailyTemperatures = new WeatherUtil().getAggregatedDailyValues(
+                        this.TJM10,
+                        this.timeZone,
+                        15,
+                        WeatherUtil.AGGREGATION_TYPE_AVERAGE);
+                if(dailyTemperatures != null)
+                {
+                    for(WeatherObservation obs:dailyTemperatures)
+                    {
+                        this.dataMatrix.setParamValueForDate(obs.getTimeMeasured(), DataMatrix.TJM10D, obs);
+                    }
+                }
+            } catch (WeatherObservationListException | InvalidAggregationTypeException ex) {
+                throw new ConfigValidationException(ex.getMessage());
+            }
+        }
+        
+        if(this.dataMatrix.getFirstDateWithParameterValue(DataMatrix.TJM10D)
+                .after(this.dataMatrix.getLastDateWithParameterValue(DataMatrix.TMD))
+                )
+        {
+            throw new ConfigValidationException("Error with weather data. First day with soil temp = " + 
+                    this.dataMatrix.getFirstDateWithParameterValue(DataMatrix.TJM10D) + ", last day with air temp = " + 
+                    this.dataMatrix.getLastDateWithParameterValue(DataMatrix.TMD));
+        }
+        
+    }
+
+    private Double findT0(Double accumulatedDayDegrees)
+    {
+      if(accumulatedDayDegrees < THRESHOLD_TMDD_PUPAE) return T0_PUPAE;
+      else if(accumulatedDayDegrees < THRESHOLD_TMDD_PUPAE + THRESHOLD_TMDD_EGG_DEPOSIT) return T0_EGG_DEPOSIT;
+      else if(accumulatedDayDegrees < THRESHOLD_TMDD_PUPAE + THRESHOLD_TMDD_EGG_DEPOSIT 
+              + THRESHOLD_TMDD_EGG_HATCH) return T0_EGG_HATCH;
+      else if(accumulatedDayDegrees < THRESHOLD_TMDD_PUPAE + THRESHOLD_TMDD_EGG_DEPOSIT 
+              + THRESHOLD_TMDD_EGG_HATCH + THRESHOLD_TMDD_LARVAE_1) return T0_L1;
+      else if(accumulatedDayDegrees < THRESHOLD_TMDD_PUPAE + THRESHOLD_TMDD_EGG_DEPOSIT 
+              + THRESHOLD_TMDD_EGG_HATCH + THRESHOLD_TMDD_LARVAE_1 + THRESHOLD_TMDD_LARVAE_2) return T0_L2;
+      else if(accumulatedDayDegrees < THRESHOLD_TMDD_PUPAE + THRESHOLD_TMDD_EGG_DEPOSIT 
+              + THRESHOLD_TMDD_EGG_HATCH + THRESHOLD_TMDD_LARVAE_1 + THRESHOLD_TMDD_LARVAE_2
+              + THRESHOLD_TMDD_LARVAE_3) return T0_L3;
+      else if(accumulatedDayDegrees < THRESHOLD_TMDD_PUPAE + THRESHOLD_TMDD_EGG_DEPOSIT 
+              + THRESHOLD_TMDD_EGG_HATCH + THRESHOLD_TMDD_LARVAE_1 + THRESHOLD_TMDD_LARVAE_2
+              + THRESHOLD_TMDD_LARVAE_3 + THRESHOLD_TMDD_LARVAE_4) return T0_L4;
+      else if(accumulatedDayDegrees < THRESHOLD_TMDD_LARVAE_1 + THRESHOLD_TMDD_LARVAE_2
+              + THRESHOLD_TMDD_LARVAE_3 + THRESHOLD_TMDD_LARVAE_4 + THRESHOLD_TMDD_LARVAE_5) return T0_L5;
+      else return T0_L5; 
+    }
+
+    private Integer getWarningStatus(Double accumulatedDayDegrees) {
+        if(accumulatedDayDegrees < THRESHOLD_TMDD_PUPAE)
+        {
+            return Result.WARNING_STATUS_NO_RISK;
+        }
+        else if(accumulatedDayDegrees < 
+                THRESHOLD_TMDD_PUPAE 
+                + THRESHOLD_TMDD_EGG_DEPOSIT
+                )
+        {
+            return Result.WARNING_STATUS_MINOR_RISK;
+        }
+        else if(accumulatedDayDegrees < 
+                THRESHOLD_TMDD_PUPAE + 
+                THRESHOLD_TMDD_EGG_DEPOSIT + 
+                THRESHOLD_TMDD_EGG_HATCH +
+                THRESHOLD_TMDD_LARVAE_1 +
+                THRESHOLD_TMDD_LARVAE_2 +
+                THRESHOLD_TMDD_LARVAE_3 +
+                THRESHOLD_TMDD_LARVAE_4 + 
+                THRESHOLD_TMDD_LARVAE_5
+                )
+        {
+            return Result.WARNING_STATUS_HIGH_RISK;
+        }
+        else
+        {
+            return Result.WARNING_STATUS_NO_WARNING;
+        }
+    }
+
+    private void setAllThresholds(Result result) {
+        result.setValue(this.getModelId().toString(), "SWARMING_START", String.valueOf(THRESHOLD_TMDD_PUPAE));
+        result.setValue(this.getModelId().toString(), "EGG_HATCH_START", String.valueOf(THRESHOLD_TMDD_PUPAE + THRESHOLD_TMDD_EGG_DEPOSIT));
+        result.setValue(this.getModelId().toString(), "TREATMENT_OPTIMUM", String.valueOf(
+                THRESHOLD_TMDD_PUPAE 
+                + THRESHOLD_TMDD_EGG_DEPOSIT
+                + THRESHOLD_TMDD_EGG_HATCH
+                + THRESHOLD_TMDD_LARVAE_1
+            )
+        );
+        
+        result.setValue(this.getModelId().toString(), "TREATMENT_LATE", String.valueOf(
+                THRESHOLD_TMDD_PUPAE 
+                + THRESHOLD_TMDD_EGG_DEPOSIT
+                + THRESHOLD_TMDD_EGG_HATCH
+                + THRESHOLD_TMDD_LARVAE_1
+                + THRESHOLD_TMDD_LARVAE_2
+                + THRESHOLD_TMDD_LARVAE_3
+            )
+        );
+    }
+}

src/main/resources/no/nibio/vips/model/mamestrabrassicaemodel/texts.properties

+# Copyright (c) 2016 NIBIO <http://www.nibio.no/>. 
+# 
+# This file is part of MamestraBrassicaeModel.
+# MamestraBrassicaeModel is free software: you can redistribute it and/or modify
+# it under the terms of the NIBIO Open Source License as published by 
+# NIBIO, either version 1 of the License, or (at your option) any
+# later version.
+# 
+# MamestraBrassicaeModel is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# NIBIO Open Source License for more details.
+# 
+# You should have received a copy of the NIBIO Open Source License
+# along with MamestraBrassicaeModel.  If not, see <http://www.nibio.no/licenses/>.
+# 
+
+name=Mamestra brassicae model
+description=TODO
+statusInterpretation=TODO
+usage=TODO

src/main/resources/no/nibio/vips/model/mamestrabrassicaemodel/texts_nb.properties

+# Copyright (c) 2016 NIBIO <http://www.nibio.no/>. 
+# 
+# This file is part of MamestraBrassicaeModel.
+# MamestraBrassicaeModel is free software: you can redistribute it and/or modify
+# it under the terms of the NIBIO Open Source License as published by 
+# NIBIO, either version 1 of the License, or (at your option) any
+# later version.
+# 
+# MamestraBrassicaeModel is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# NIBIO Open Source License for more details.
+# 
+# You should have received a copy of the NIBIO Open Source License
+# along with MamestraBrassicaeModel.  If not, see <http://www.nibio.no/licenses/>.
+# 
+
+name=K\u00e5lflymodell
+description=TODO
+statusInterpretation=TODO
+usage=TODO

src/test/java/no/nibio/vips/model/mamestrabrassicaemodel/MamestraBrassicaeModelTest.java

+/*
+ * Copyright (c) 2016 NIBIO <http://www.nibio.no/>. 
+ * 
+ * This file is part of MamestraBrassicaeModel.
+ * MamestraBrassicaeModel is free software: you can redistribute it and/or modify
+ * it under the terms of the NIBIO Open Source License as published by 
+ * NIBIO, either version 1 of the License, or (at your option) any
+ * later version.
+ * 
+ * MamestraBrassicaeModel is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * NIBIO Open Source License for more details.
+ * 
+ * You should have received a copy of the NIBIO Open Source License
+ * along with MamestraBrassicaeModel.  If not, see <http://www.nibio.no/licenses/>.
+ * 
+ */
+package no.nibio.vips.model.mamestrabrassicaemodel;
+
+import com.fasterxml.jackson.core.JsonFactory;
+import com.fasterxml.jackson.core.JsonParser;
+import com.fasterxml.jackson.core.type.TypeReference;
+import com.fasterxml.jackson.databind.JsonNode;
+import com.fasterxml.jackson.databind.MappingJsonFactory;
+import com.fasterxml.jackson.databind.ObjectMapper;
+import java.io.BufferedInputStream;
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.Date;
+import java.util.List;
+import static junit.framework.Assert.fail;
+import no.nibio.vips.entity.ModelConfiguration;
+import no.nibio.vips.entity.Result;
+import no.nibio.vips.entity.WeatherObservation;
+import no.nibio.vips.model.ModelId;
+import org.junit.After;
+import org.junit.AfterClass;
+import org.junit.Before;
+import org.junit.BeforeClass;
+import org.junit.Test;
+import static org.junit.Assert.*;
+
+/**
+ *
+ * @author treinar
+ */
+public class MamestraBrassicaeModelTest {
+    
+    public MamestraBrassicaeModelTest() {
+    }
+    
+    @BeforeClass
+    public static void setUpClass() {
+    }
+    
+    @AfterClass
+    public static void tearDownClass() {
+    }
+    
+    @Before
+    public void setUp() {
+    }
+    
+    @After
+    public void tearDown() {
+    }
+
+    /**
+     * Test of getResult method, of class MamestraBrassicaeModel.
+     */
+    @Test
+    public void testGetResult() throws Exception {
+        System.out.println("getResult");
+        ModelConfiguration config = this.getConfiguration("/aas_2015.json");
+        MamestraBrassicaeModel instance = new MamestraBrassicaeModel();
+        instance.setConfiguration(config);
+        List<Result> expResult = null;
+        List<Result> result = instance.getResult();
+        assertNotNull(result);
+        for(Result res:result)
+        {
+            System.out.println(res.toString());
+        }
+        
+    }
+
+    /**
+     * Test of getModelId method, of class MamestraBrassicaeModel.
+     */
+    @Test
+    public void testGetModelId() {
+        System.out.println("getModelId");
+        MamestraBrassicaeModel instance = new MamestraBrassicaeModel();
+        ModelId expResult = new ModelId("MAMESTRABR");
+        ModelId result = instance.getModelId();
+        assertEquals(expResult.toString(), result.toString());
+    }
+
+    /**
+     * Test of getModelName method, of class MamestraBrassicaeModel.
+     */
+    @Test
+    public void testGetModelName_0args() {
+        System.out.println("getModelName");
+        MamestraBrassicaeModel instance = new MamestraBrassicaeModel();
+        String expResult = "";
+        String result = instance.getModelName();
+        assertNotNull(result);
+    }
+
+    
+
+    /**
+     * Test of getLicense method, of class MamestraBrassicaeModel.
+     */
+    @Test
+    public void testGetLicense() {
+        System.out.println("getLicense");
+        MamestraBrassicaeModel instance = new MamestraBrassicaeModel();
+        String expResult = "";
+        String result = instance.getLicense();
+        assertNotNull(result);
+    }
+
+    /**
+     * Test of getCopyright method, of class MamestraBrassicaeModel.
+     */
+    @Test
+    public void testGetCopyright() {
+        System.out.println("getCopyright");
+        MamestraBrassicaeModel instance = new MamestraBrassicaeModel();
+        String expResult = "";
+        String result = instance.getCopyright();
+        assertNotNull(result);
+    }
+
+    /**
+     * Test of getModelDescription method, of class MamestraBrassicaeModel.
+     */
+    @Test
+    public void testGetModelDescription_0args() {
+        System.out.println("getModelDescription");
+        MamestraBrassicaeModel instance = new MamestraBrassicaeModel();
+        String expResult = "";
+        String result = instance.getModelDescription();
+        assertNotNull(result);
+    }
+
+    
+
+    /**
+     * Test of getWarningStatusInterpretation method, of class MamestraBrassicaeModel.
+     */
+    @Test
+    public void testGetWarningStatusInterpretation_0args() {
+        System.out.println("getWarningStatusInterpretation");
+        MamestraBrassicaeModel instance = new MamestraBrassicaeModel();
+        String expResult = "";
+        String result = instance.getWarningStatusInterpretation();
+        assertNotNull(result);
+    }
+
+    
+
+    /**
+     * Test of getModelUsage method, of class MamestraBrassicaeModel.
+     */
+    @Test
+    public void testGetModelUsage_0args() {
+        System.out.println("getModelUsage");
+        MamestraBrassicaeModel instance = new MamestraBrassicaeModel();
+        String expResult = "";
+        String result = instance.getModelUsage();
+        assertNotNull(result);
+    }
+
+    
+    /**
+     * Test of getSampleConfig method, of class MamestraBrassicaeModel.
+     */
+    @Test
+    public void testGetSampleConfig() {
+        System.out.println("getSampleConfig");
+        MamestraBrassicaeModel instance = new MamestraBrassicaeModel();
+        String expResult = "";
+        String result = instance.getSampleConfig();
+        assertNotNull(result);
+    }
+
+    /**
+     * Test of setConfiguration method, of class MamestraBrassicaeModel.
+     */
+    @Test
+    public void testSetConfiguration() throws Exception {
+        System.out.println("setConfiguration");
+        ModelConfiguration config = this.getConfiguration("/weatherdata_both.json");
+        MamestraBrassicaeModel instance = new MamestraBrassicaeModel();
+        instance.setConfiguration(config);
+        
+    }
+    
+    private ModelConfiguration getConfiguration(String fileName)
+    {
+        try {
+            ModelConfiguration config = new ModelConfiguration();
+            config.setModelId(MamestraBrassicaeModel.MODEL_ID.toString());
+            
+            
+            config.setConfigParameter("timeZone", "Europe/Oslo");
+            BufferedInputStream inputStream = new BufferedInputStream(this.getClass().getResourceAsStream(fileName));
+            JsonFactory f = new MappingJsonFactory();
+            JsonParser jp = f.createParser(inputStream);
+            JsonNode all = jp.readValueAsTree();
+            List<WeatherObservation> observations = new ArrayList<>();
+            ObjectMapper mapper = new ObjectMapper();
+
+            Date firstDate = null;
+            Date lastDate = null;
+            if(all.isArray())
+            {
+                for(JsonNode node : all){
+                    Date timeMeasured = (Date)mapper.convertValue(node.get("timeMeasured").asText(), new TypeReference<Date>(){});
+                    if(firstDate == null || firstDate.compareTo(timeMeasured) > 0)
+                    {
+                        firstDate = timeMeasured;
+                    }
+                    if(lastDate == null || lastDate.compareTo(timeMeasured) < 0)
+                    {
+                        lastDate = timeMeasured;
+                    }
+                    //System.out.println(node.toString());
+                    WeatherObservation observation = new WeatherObservation();
+                    observation.setTimeMeasured(timeMeasured);
+                    observation.setLogIntervalId(node.get("logIntervalId").asInt());
+                    observation.setElementMeasurementTypeId(node.get("elementMeasurementTypeId").asText());
+                    observation.setValue(node.get("value").asDouble());
+                    observations.add(observation);
+                }
+
+            }
+            else
+            {
+                fail("Data input from file is not a JSON array");
+            }
+            config.setConfigParameter("observations", observations);
+
+            
+            return config;
+        } catch (IOException ex) {
+            ex.printStackTrace();
+            return null;
+        } 
+    }
+}