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VIPS
Models
GRID
Grid ADASMELIAE
Commits
05425ed5
Commit
05425ed5
authored
3 months ago
by
Lene Wasskog
Browse files
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feat: Enable model to run for specific year [VIPSUTV-1011]
Also, make sure that result files are saved to year dir
parent
f7881ab1
No related branches found
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Pipeline
#5983
passed
3 months ago
Stage: deploy
Changes
3
Pipelines
1
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3 changed files
ADASMELIAE.py
+37
-16
37 additions, 16 deletions
ADASMELIAE.py
env-sample
+3
-1
3 additions, 1 deletion
env-sample
run_ADASMELIAE.sh
+7
-1
7 additions, 1 deletion
run_ADASMELIAE.sh
with
47 additions
and
18 deletions
ADASMELIAE.py
+
37
−
16
View file @
05425ed5
...
...
@@ -45,16 +45,16 @@ DEBUG = (
model_id
=
os
.
getenv
(
"
MODEL_ID
"
)
home_dir
=
os
.
getenv
(
"
HOME_DIR
"
)
weather_data_dir
=
os
.
getenv
(
"
WEATHER_DATA_DIR
"
)
result_tif_dir
=
os
.
getenv
(
"
RESULT_TIF_DIR
"
)
result_mapfile_dir
=
os
.
getenv
(
"
RESULT_MAPFILE_DIR
"
)
result_tif_
base_
dir
=
os
.
getenv
(
"
RESULT_TIF_DIR
"
)
result_mapfile_
base_
dir
=
os
.
getenv
(
"
RESULT_MAPFILE_DIR
"
)
tmp_dir
=
os
.
getenv
(
"
TMP_DIR
"
)
template_dir
=
f
"
{
home_dir
}
mapfile/
"
weather_data_filename_pattern
=
os
.
getenv
(
"
WEATHER_DATA_FILENAME_DATEFORMAT
"
)
start_MM_DD
=
os
.
getenv
(
"
START_DATE_MM_DD
"
)
end_MM_DD
=
os
.
getenv
(
"
END_DATE_MM_DD
"
)
config_file_path
=
f
"
{
home_dir
}
ADASMELIAE.cfg
"
mask_file_path
=
(
f
"
{
home_dir
}{
os
.
getenv
(
'
MASK_FILE
'
)
}
"
if
os
.
getenv
(
"
MASK_FILE
"
)
else
None
...
...
@@ -126,12 +126,12 @@ def remove_temporary_files():
# Remove previously calculated results
def
remove_old_results
():
def
remove_old_results
(
tif_dir
,
mapfile_dir
):
logging
.
info
(
"
Remove previously calculated results
"
)
if
glob
.
glob
(
f
"
{
result_
tif_dir
}
*.tif
"
):
run_command
(
command
=
f
"
rm
{
result_
tif_dir
}
*.tif
"
)
if
glob
.
glob
(
f
"
rm
{
result_
mapfile_dir
}
*.map
"
):
run_command
(
command
=
f
"
rm
{
result_
mapfile_dir
}
*.map
"
)
if
glob
.
glob
(
f
"
{
tif_dir
}
*.tif
"
):
run_command
(
command
=
f
"
rm
{
tif_dir
}
*.tif
"
)
if
glob
.
glob
(
f
"
rm
{
mapfile_dir
}
*.map
"
):
run_command
(
command
=
f
"
rm
{
mapfile_dir
}
*.map
"
)
# Get unique dates in given file
def
get_unique_dates
(
input_file
):
...
...
@@ -158,19 +158,39 @@ if __name__ == "__main__":
start_time
=
time
.
time
()
# For logging execution time
today
=
datetime
.
now
().
date
()
year
=
today
.
year
# Check if a year argument is provided
if
len
(
sys
.
argv
)
>
1
:
year
=
int
(
sys
.
argv
[
1
])
else
:
today
=
datetime
.
now
().
date
()
year
=
today
.
year
# Ensure that model is not run for future year
if
year
>
today
.
year
:
logging
.
error
(
f
"
Cannot run model for future year (
{
year
}
). Quit.
"
)
sys
.
exit
()
# Ensure that output year dirs exist
result_tif_year_dir
=
f
"
{
result_tif_base_dir
}
/
{
year
}
"
result_mapfile_year_dir
=
f
"
{
result_mapfile_base_dir
}
/
{
year
}
"
os
.
makedirs
(
result_tif_year_dir
,
exist_ok
=
True
)
os
.
makedirs
(
result_mapfile_year_dir
,
exist_ok
=
True
)
model_start_date
=
datetime
.
strptime
(
f
"
{
year
}
-
{
start_MM_DD
}
"
,
"
%Y-%m-%d
"
).
date
()
model_end_date
=
datetime
.
strptime
(
f
"
{
year
}
-
{
end_MM_DD
}
"
,
"
%Y-%m-%d
"
).
date
()
start_date
=
model_start_date
end_date
=
today
+
timedelta
(
days
=
2
)
if
year
==
today
.
year
:
# Run for current year
end_date
=
today
+
timedelta
(
days
=
2
)
else
:
# Run for previous year
end_date
=
model_end_date
+
timedelta
(
days
=
2
)
logging
.
info
(
f
"
Model start date
{
model_start_date
}
. Model end date
{
model_end_date
}
.
"
)
logging
.
info
(
f
"
Attempt to run model
{
model_id
}
for start date
{
start_date
}
and end date
{
end_date
}
(today + 2 days)
"
f
"
Attempt to run model
{
model_id
}
for
year
{
year
}
,
start date
{
start_date
}
and end date
{
end_date
}
"
)
# Ensure that model is not run after model run period (include 2 extra days at the end to replace forecast with reanalysed)
...
...
@@ -183,7 +203,7 @@ if __name__ == "__main__":
logging
.
error
(
"
Model period not started. Quit.
"
)
sys
.
exit
()
weather_data_file
=
weather_data_dir
+
today
.
strftime
(
weather_data_filename_pattern
)
weather_data_file
=
weather_data_dir
+
weather_data_filename_pattern
.
replace
(
'
%Y
'
,
str
(
year
)
)
max_temp_in_period_file
=
f
"
{
tmp_dir
}{
year
}
_max_temp_for_period.nc
"
unmasked_result_file
=
f
"
{
tmp_dir
}{
year
}
_unmasked_result.nc
"
final_result_file
=
f
"
{
tmp_dir
}{
year
}
_result.nc
"
...
...
@@ -233,7 +253,7 @@ if __name__ == "__main__":
]
logging
.
info
(
f
"
Split into
{
len
(
timestep_filenames
)
}
timestep files
"
)
remove_old_results
()
remove_old_results
(
result_tif_year_dir
,
result_mapfile_year_dir
)
for
file
in
timestep_files
:
filename
=
os
.
path
.
basename
(
file
)
...
...
@@ -242,8 +262,8 @@ if __name__ == "__main__":
with
open
(
"
/dev/null
"
,
"
w
"
)
as
devnull
:
warning_status_lcc
=
f
"
{
tmp_dir
}
result_WARNING_STATUS_
{
current_file_date_str
}
_lcc.tif
"
result_lcc
=
f
"
{
tmp_dir
}
result_
{
current_file_date_str
}
_lcc.tif
"
warning_status
=
f
"
{
result_tif_dir
}
result_WARNING_STATUS_
{
current_file_date_str
}
.tif
"
result
=
f
"
{
result_tif_dir
}
result_
{
current_file_date_str
}
.tif
"
warning_status
=
f
"
{
result_tif_
year_
dir
}
/
result_WARNING_STATUS_
{
current_file_date_str
}
.tif
"
result
=
f
"
{
result_tif_
year_
dir
}
/
result_
{
current_file_date_str
}
.tif
"
logging
.
debug
(
f
"
Calculate result for
{
current_file_date_str
}
"
)
...
...
@@ -265,6 +285,7 @@ if __name__ == "__main__":
command
=
f
"
gdal_translate -ot Float32 -of GTiff NETCDF:
'
{
file
}
'
:
{
tm_max
}
{
result_lcc
}
"
,
stdout
=
devnull
,
)
# Need to reproject the files, to ensure we have the projection given in the generated mapfile. We always use EPSG:4326 for this
run_command
(
command
=
f
"
gdalwarp -t_srs EPSG:4326
{
warning_status_lcc
}
{
warning_status
}
"
,
...
...
@@ -305,7 +326,7 @@ if __name__ == "__main__":
"
language_codes
"
:
language_codes
,
}
)
with
open
(
f
"
{
result_mapfile_dir
}
/
{
model_id
}
.map
"
,
"
w
"
)
as
f
:
with
open
(
f
"
{
result_mapfile_
year_
dir
}
/
{
model_id
}
.map
"
,
"
w
"
)
as
f
:
f
.
write
(
output
)
# remove_temporary_files()
...
...
This diff is collapsed.
Click to expand it.
env-sample
+
3
−
1
View file @
05425ed5
...
...
@@ -2,6 +2,8 @@
# Default value is False
DEBUG=False
# If not given, the model is run for current year
YEAR=2024
# This is used to auto generate some variables and file names
MODEL_ID="ADASMELIAE"
# The start date MM-DD of the model
...
...
@@ -31,4 +33,4 @@ MAPSERVER_IMAGE_PATH=/foo/mapserver/image/
# The value of the EXTENT parameter in Mapserver's mapfile. Units are DD (Decimal degrees)
MAPSERVER_EXTENT="-23.5 29.5 62.5 70.5"
# Path to optional CSV file with polygons for masking result.
MASK_FILE=europe_coastline.csv
\ No newline at end of file
MASK_FILE=europe_coastline.csv
This diff is collapsed.
Click to expand it.
run_ADASMELIAE.sh
+
7
−
1
View file @
05425ed5
...
...
@@ -42,6 +42,12 @@ then
exit
fi
if
[
-z
"
${
YEAR
}
"
]
then
YEAR
=
$(
date
+%Y
)
echo
"YEAR is not set. Using the current year:
${
YEAR
}
"
fi
# Paths to scripts and requirements
LOG_FILE
=
${
HOME_DIR
}
log/ADASMELIAE.log
REQUIREMENTS
=
${
HOME_DIR
}
requirements.txt
...
...
@@ -60,7 +66,7 @@ if [ -n "$VIRTUAL_ENV" ]; then
pip
install
-q
-r
$REQUIREMENTS
# Run the model
python3
${
HOME_DIR
}
ADASMELIAE.py
>>
"
$LOG_FILE
"
2>&1
python3
${
HOME_DIR
}
ADASMELIAE.py
"
$YEAR
"
>>
"
$LOG_FILE
"
2>&1
# Deactivate the virtual environment
deactivate
...
...
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Click to expand it.
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