update for /home/datasciencefolder mapping in the oracle cloud

Dockerfile

@@ -37,14 +37,17 @@ RUN pip install parse oci ocifs
 COPY requirements.txt app/requirements.txt
 RUN pip install --no-cache -r app/requirements.txt
 
-COPY . /app
+# COPY . /app
+# WORKDIR /app
 
-WORKDIR /app
+COPY . /home/datascience/app
+WORKDIR /home/datascience/app
 
 # ENTRYPOINT ["/miniconda/bin/conda", "run", "-n", "pdal-env", "python", "/app/run_oracle_wrapper.py"]
 
-ENTRYPOINT ["/miniconda/bin/conda", "run", "-n", "pdal-env", "python", "/app/run_oracle_wrapper_local.py"]
+# ENTRYPOINT ["/miniconda/bin/conda", "run", "-n", "pdal-env", "python", "/app/run_oracle_wrapper_local.py"]
 
+ENTRYPOINT ["/miniconda/bin/conda", "run", "-n", "pdal-env", "python", "/home/datascience/app/run_oracle_wrapper_local.py"]
 
 
 

check_list.info

 Dockerfile - set correct oracle wrapper
+
+# core steps
 build.sh
 run_oracle_wrapper.py or run_oracle_wrapper_local.py -> pick a right mode (DEBUG or not)
-config.yaml -> pick segmentation or instance segmentation
\ No newline at end of file
+config.yaml -> pick segmentation or instance segmentation
+
+# pushing docker 
+docker tag nibio/pc-geoslam-oracle-inst-seg:latest fra.ocir.io/axqlz2potslu/nibio/pc-geoslam-oracle-inst-seg
+docker push fra.ocir.io/axqlz2potslu/nibio/pc-geoslam-oracle-sem-seg
\ No newline at end of file

d_run.sh

@@ -6,8 +6,9 @@ echo "Running the container"
 # docker run --gpus all --name test_oracle nibio/pc-geoslam-oracle
 docker run -it --gpus all \
     --name test_oracle \
-    --mount type=bind,source=/home/nibio/mutable-outside-world/code/oracle_deploy/instance_segmentation_classic/local_folder_oracle,target=/app/local_folder_oracle \
-    nibio/pc-geoslam-oracle
+    --mount type=bind,source=/home/nibio/mutable-outside-world/code/oracle_deploy/instance_segmentation_classic/local_folder_oracle,target=/home/datascience/app/local_folder_oracle \
+    --mount type=bind,source=/home/nibio/mutable-outside-world/code/oracle_deploy/instance_segmentation_classic/local_folder_oracle_hard,target=/home/datascience/app/local_folder_oracle_hard \
+    nibio/pc-geoslam-oracle > test_oracle.log 2>&1
 
 
 

helpers/clean_oracle_log_from_timestemp.py

+import sys
+
+def remove_prefix(lines):
+    processed_lines = [line.split(' - ', 1)[1] if ' - ' in line else line for line in lines]
+    return processed_lines
+
+def process_file(input_filename, output_filename):
+    with open(input_filename, 'r') as input_file:
+        data = input_file.read()
+    lines = data.split('\n')
+    processed_lines = remove_prefix(lines)
+    processed_data = '\n'.join(processed_lines)
+    with open(output_filename, 'w') as output_file:
+        output_file.write(processed_data)
+
+if __name__ == '__main__':
+    if len(sys.argv) < 3:
+        print("Please provide both input and output filenames as command-line arguments.")
+    else:
+        input_filename = sys.argv[1]
+        output_filename = sys.argv[2]
+        process_file(input_filename, output_filename)
+        print(f"Processed data saved to {output_filename}.")

run_oracle_wrapper_local.py

@@ -20,8 +20,12 @@ def run_oracle_wrapper(path_to_config_file):
     # read system environment variables
 
     if DEBUG_MODE:
-        input_location = "local_folder_oracle/las_files/"
-        output_location = "local_folder_oracle/results/"
+        input_location = "local_folder_oracle_hard/las_files/"
+        output_location = "local_folder_oracle_hard/results/"
+
+        # input_location = "local_folder_oracle/las_files/"
+        # output_location = "local_folder_oracle/results/"
+
         # remove content of the output folder if it exists
         if os.path.exists(output_location):
             shutil.rmtree(output_location, ignore_errors=True)