Initial commit

.gitignore

+target/
+classes/

nb-configuration.xml

+<?xml version="1.0" encoding="UTF-8"?>
+<project-shared-configuration>
+    <!--
+This file contains additional configuration written by modules in the NetBeans IDE.
+The configuration is intended to be shared among all the users of project and
+therefore it is assumed to be part of version control checkout.
+Without this configuration present, some functionality in the IDE may be limited or fail altogether.
+-->
+    <properties xmlns="http://www.netbeans.org/ns/maven-properties-data/1">
+        <!--
+Properties that influence various parts of the IDE, especially code formatting and the like. 
+You can copy and paste the single properties, into the pom.xml file and the IDE will pick them up.
+That way multiple projects can share the same settings (useful for formatting rules for example).
+Any value defined here will override the pom.xml file value but is only applicable to the current project.
+-->
+        <netbeans.hint.license>nibio_open_source_license.ftl</netbeans.hint.license>
+    </properties>
+</project-shared-configuration>

pom.xml

+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+    <modelVersion>4.0.0</modelVersion>
+    <groupId>no.nibio.vips.model</groupId>
+    <artifactId>SeptoriaReferenceHumidityModel</artifactId>
+    <version>1.0-SNAPSHOT</version>
+    <packaging>jar</packaging>
+    <dependencies>
+        <dependency>
+            <groupId>no.nibio.vips.common</groupId>
+            <artifactId>VIPSCommon</artifactId>
+            <version>1.0-SNAPSHOT</version>
+        </dependency>
+        <dependency>
+            <groupId>org.junit.jupiter</groupId>
+            <artifactId>junit-jupiter-api</artifactId>
+            <version>5.3.1</version>
+            <scope>test</scope>
+        </dependency>
+        <dependency>
+            <groupId>org.junit.jupiter</groupId>
+            <artifactId>junit-jupiter-params</artifactId>
+            <version>5.3.1</version>
+            <scope>test</scope>
+        </dependency>
+        <dependency>
+            <groupId>org.junit.jupiter</groupId>
+            <artifactId>junit-jupiter-engine</artifactId>
+            <version>5.3.1</version>
+            <scope>test</scope>
+        </dependency>
+    </dependencies>
+    <properties>
+        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
+        <maven.compiler.source>11</maven.compiler.source>
+        <maven.compiler.target>11</maven.compiler.target>
+    </properties>
+</project>
\ No newline at end of file

src/main/java/no/nibio/vips/model/septoriareferencehumiditymodel/DataMatrix.java

+/*
+ * Copyright (c) 2019 NIBIO <http://www.nibio.no/>. 
+ * 
+ * This file is part of SeptoriaReferenceHumidityModel.
+ * SeptoriaReferenceHumidityModel is free software: you can redistribute it and/or modify
+ * it under the terms of the NIBIO Open Source License as published by 
+ * NIBIO, either version 1 of the License, or (at your option) any
+ * later version.
+ * 
+ * SeptoriaReferenceHumidityModel is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * NIBIO Open Source License for more details.
+ * 
+ * You should have received a copy of the NIBIO Open Source License
+ * along with SeptoriaReferenceHumidityModel.  If not, see <http://www.nibio.no/licenses/>.
+ * 
+ */
+
+package no.nibio.vips.model.septoriareferencehumiditymodel;
+
+import no.nibio.vips.util.DateMap;
+
+/**
+ * @copyright 2018 <a href="http://www.nibio.no/">NIBIO</a>
+ * @author Tor-Einar Skog <tor-einar.skog@nibio.no>
+ */
+public class DataMatrix extends DateMap {
+    public final static String UM = "UM"; // Relative humidity (%)
+    public final static String BT = "BT"; // Leaf wetness (minutes/hour)
+    public final static String RR = "RR"; // Rainfall (mm)
+    public final static String TM = "TM"; // Mean temperature
+    public final static String WET_HOUR_SUM = "WHS"; // Wet hour sum
+}

src/main/java/no/nibio/vips/model/septoriareferencehumiditymodel/SeptoriaReferenceHumidityModel.java

+/*
+ * Copyright (c) 2019 NIBIO <http://www.nibio.no/>. 
+ * 
+ * This file is part of SeptoriaReferenceHumidityModel.
+ * SeptoriaReferenceHumidityModel is free software: you can redistribute it and/or modify
+ * it under the terms of the NIBIO Open Source License as published by 
+ * NIBIO, either version 1 of the License, or (at your option) any
+ * later version.
+ * 
+ * SeptoriaReferenceHumidityModel is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * NIBIO Open Source License for more details.
+ * 
+ * You should have received a copy of the NIBIO Open Source License
+ * along with SeptoriaReferenceHumidityModel.  If not, see <http://www.nibio.no/licenses/>.
+ * 
+ */
+
+package no.nibio.vips.model.septoriareferencehumiditymodel;
+
+import com.fasterxml.jackson.core.type.TypeReference;
+import com.fasterxml.jackson.databind.ObjectMapper;
+import java.util.ArrayList;
+import java.util.Date;
+import java.util.List;
+import java.util.TimeZone;
+import no.nibio.vips.entity.ModelConfiguration;
+import no.nibio.vips.entity.Result;
+import no.nibio.vips.entity.ResultImpl;
+import no.nibio.vips.entity.WeatherObservation;
+import no.nibio.vips.model.ConfigValidationException;
+import no.nibio.vips.model.Model;
+import no.nibio.vips.model.ModelExcecutionException;
+import no.nibio.vips.model.ModelId;
+import no.nibio.vips.util.WeatherElements;
+import no.nibio.vips.util.WeatherUtil;
+import no.nibio.vips.util.XDate;
+
+/**
+ * @copyright 2019 <a href="http://www.nibio.no/">NIBIO</a>
+ * @author Tor-Einar Skog <tor-einar.skog@nibio.no>
+ */
+public class SeptoriaReferenceHumidityModel implements Model {
+    
+    public final static ModelId MODEL_ID = new ModelId("SEPTREFHUM");
+    
+    private final Integer MINIMUM_HOURLY_VALUES = 23;
+    
+    private final Double TEMPERATURE_THRESHOLD = 8.0;
+    private List<WeatherObservation> observations;
+    private TimeZone timeZone;
+
+    @Override
+    public List<Result> getResult() throws ModelExcecutionException {
+        
+        if(this.observations == null)
+        {
+            throw new ModelExcecutionException("No weather data. Aborting.");
+        }
+        
+        List<Result> retVal = new ArrayList<>();
+        DataMatrix dMatrix = new DataMatrix();
+        
+        this.observations.forEach(obs -> {
+            dMatrix.setParamDoubleValueForDate(obs.getTimeMeasured(), obs.getElementMeasurementTypeId(), obs.getValue());
+        });
+        List<Date> sortedMidnightTimestamps = dMatrix.getSortedDateAtMidnightKeys(this.timeZone);
+        sortedMidnightTimestamps.forEach((Date midnightTimestamp) -> {
+            Integer numberOfHoursWithDataForDay = 0;
+            Integer wetHoursForDay = 0;
+            XDate currentHour = new XDate(midnightTimestamp);
+            Date tomorrow = currentHour.getTomorrow();
+            
+            while(currentHour.before(tomorrow))
+            {
+                Double TM = dMatrix.getParamDoubleValueForDate(currentHour, WeatherElements.TEMPERATURE_MEAN);
+                Double UM = dMatrix.getParamDoubleValueForDate(currentHour, WeatherElements.RELATIVE_HUMIDITY_MEAN);
+                Double BT = dMatrix.getParamDoubleValueForDate(currentHour, WeatherElements.LEAF_WETNESS_DURATION);
+                Double RR = dMatrix.getParamDoubleValueForDate(currentHour, WeatherElements.PRECIPITATION);
+                
+                if(TM != null && (UM != null || BT != null || RR != null))
+                {
+                    numberOfHoursWithDataForDay++; // We add up the number of hours we actually have weather data for
+                }
+
+                if(TM != null && TM >= this.TEMPERATURE_THRESHOLD)
+                {
+                    wetHoursForDay += ((BT != null && BT > 30.0) || (RR != null && RR > 0.2) || (UM != null && UM > 88.0)) ? 1 : 0;
+                }
+                
+                currentHour.add1Hour();
+            }
+            
+            Result r = new ResultImpl();
+            r.setValidTimeStart(midnightTimestamp);
+            r.setValidTimeEnd(currentHour.get1HourBefore());
+            if(numberOfHoursWithDataForDay < this.MINIMUM_HOURLY_VALUES)
+            {
+                r.setWarningStatus(Result.WARNING_STATUS_NO_WARNING_MISSING_DATA);
+            }
+            else
+            {
+                r.setValue(SeptoriaReferenceHumidityModel.MODEL_ID.toString(), DataMatrix.WET_HOUR_SUM, wetHoursForDay.toString());
+                r.setWarningStatus(Result.WARNING_STATUS_NO_WARNING);
+            }
+            retVal.add(r);
+        });
+                
+        return retVal;
+    }
+
+    @Override
+    public ModelId getModelId() {
+        return SeptoriaReferenceHumidityModel.MODEL_ID;
+    }
+
+    @Override
+    public String getModelName() {
+        return this.getModelName(DEFAULT_LANGUAGE);
+    }
+
+    @Override
+    public String getModelName(String language) {
+        return "Septoria Reference Humidity Model";
+    }
+
+    @Override
+    public String getLicense() {
+        return "Copyright (c) 2019 NIBIO <http://www.nibio.no/>. \n" +
+            "\n" +
+            "This file is part of SeptoriaReferenceHumidityModel. \n" + 
+            "SeptoriaReferenceHumidityModel is free software: you can redistribute it and/or modify \n" + 
+            "it under the terms of the NIBIO Open Source License as published by \n" + 
+            "NIBIO, either version 1 of the License, or (at your option) any \n" +
+            "later version. \n" +
+            "\n" +
+            "SeptoriaReferenceHumidityModel is distributed in the hope that it will be useful, \n" +
+            "but WITHOUT ANY WARRANTY; without even the implied warranty of \n" +
+            "MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the \n" +
+            "NIBIO Open Source License for more details. \n" +
+            "" +
+            "You should have received a copy of the NIBIO Open Source License \n" +
+            "along with SeptoriaReferenceHumidityModel.  If not, see <http://www.nibio.no/licenses/>. \n";
+    }
+
+    @Override
+    public String getCopyright() {
+        return "(C) 2019 NIBIO";
+    }
+
+    @Override
+    public String getModelDescription() {
+        return this.getModelDescription(DEFAULT_LANGUAGE);
+    }
+
+    @Override
+    public String getModelDescription(String language) {
+        return "TODO";
+    }
+
+    @Override
+    public String getWarningStatusInterpretation() {
+        return this.getWarningStatusInterpretation(DEFAULT_LANGUAGE);
+    }
+
+    @Override
+    public String getWarningStatusInterpretation(String language) {
+        return "TODO";
+    }
+
+    @Override
+    public String getModelUsage() {
+        return this.getModelUsage(DEFAULT_LANGUAGE);
+    }
+
+    @Override
+    public String getModelUsage(String language) {
+        return "TODO";
+    }
+
+    @Override
+    public String getSampleConfig() {
+        return "TODO";
+    }
+
+    @Override
+    public void setConfiguration(ModelConfiguration config) throws ConfigValidationException {
+        ObjectMapper mapper = new ObjectMapper();
+        this.timeZone = TimeZone.getTimeZone((String) config.getConfigParameter("timeZone"));
+        this.observations = mapper.convertValue(config.getConfigParameter("observations"), new TypeReference<List<WeatherObservation>>(){});
+    }
+
+}

src/test/java/no/nibio/vips/model/septoriareferencehumiditymodel/SeptoriaReferenceHumidityModelTest.java

+/*
+ * Copyright (c) 2019 NIBIO <http://www.nibio.no/>. 
+ * 
+ * This file is part of SeptoriaReferenceHumidityModel.
+ * SeptoriaReferenceHumidityModel is free software: you can redistribute it and/or modify
+ * it under the terms of the NIBIO Open Source License as published by 
+ * NIBIO, either version 1 of the License, or (at your option) any
+ * later version.
+ * 
+ * SeptoriaReferenceHumidityModel is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * NIBIO Open Source License for more details.
+ * 
+ * You should have received a copy of the NIBIO Open Source License
+ * along with SeptoriaReferenceHumidityModel.  If not, see <http://www.nibio.no/licenses/>.
+ * 
+ */
+package no.nibio.vips.model.septoriareferencehumiditymodel;
+
+import java.util.List;
+import no.nibio.vips.entity.ModelConfiguration;
+import no.nibio.vips.entity.Result;
+import no.nibio.vips.model.ModelId;
+import no.nibio.vips.util.test.WeatherDataFileReader;
+import org.junit.jupiter.api.AfterEach;
+import org.junit.jupiter.api.AfterAll;
+import org.junit.jupiter.api.BeforeEach;
+import org.junit.jupiter.api.BeforeAll;
+import org.junit.jupiter.api.Test;
+import static org.junit.jupiter.api.Assertions.*;
+
+/**
+ *
+ * @author treinar
+ */
+public class SeptoriaReferenceHumidityModelTest {
+    
+    public SeptoriaReferenceHumidityModelTest() {
+    }
+    
+    @BeforeAll
+    public static void setUpClass() {
+    }
+    
+    @AfterAll
+    public static void tearDownClass() {
+    }
+    
+    @BeforeEach
+    public void setUp() {
+    }
+    
+    @AfterEach
+    public void tearDown() {
+    }
+
+    /**
+     * Test of getResult method, of class SeptoriaReferenceHumidityModel.
+     */
+    @org.junit.jupiter.api.Test
+    public void testGetResult() throws Exception {
+        System.out.println("getResult");
+        ModelConfiguration config = new WeatherDataFileReader().getModelConfigurationWithWeatherData("/ullensvang.json", SeptoriaReferenceHumidityModel.MODEL_ID.toString());
+        config.setConfigParameter("timeZone", "Europe/Oslo");
+        SeptoriaReferenceHumidityModel instance = new SeptoriaReferenceHumidityModel();
+        instance.setConfiguration(config);
+
+        List<Result> result = instance.getResult();
+        //result.forEach(r->System.out.println(r.toString()));
+        assertNotNull(result);
+        
+    }
+
+    /**
+     * Test of getModelId method, of class SeptoriaReferenceHumidityModel.
+     */
+    //@org.junit.jupiter.api.Test
+    public void testGetModelId() {
+        System.out.println("getModelId");
+        SeptoriaReferenceHumidityModel instance = new SeptoriaReferenceHumidityModel();
+        ModelId result = instance.getModelId();
+        assertEquals(result, SeptoriaReferenceHumidityModel.MODEL_ID);
+        
+    }
+
+    /**
+     * Test of getModelName method, of class SeptoriaReferenceHumidityModel.
+     */
+    //@org.junit.jupiter.api.Test
+    public void testGetModelName_0args() {
+        System.out.println("getModelName");
+        SeptoriaReferenceHumidityModel instance = new SeptoriaReferenceHumidityModel();
+        String result = instance.getModelName();
+        assertNotNull(result);
+    }
+
+    /**
+     * Test of getModelName method, of class SeptoriaReferenceHumidityModel.
+     */
+    //@org.junit.jupiter.api.Test
+    public void testGetModelName_String() {
+        System.out.println("getModelName");
+        String language = "";
+        SeptoriaReferenceHumidityModel instance = new SeptoriaReferenceHumidityModel();
+        String result = instance.getModelName(language);
+        assertNotNull(result);
+        
+    }
+
+    /**
+     * Test of getLicense method, of class SeptoriaReferenceHumidityModel.
+     */
+    //@org.junit.jupiter.api.Test
+    public void testGetLicense() {
+        System.out.println("getLicense");
+        SeptoriaReferenceHumidityModel instance = new SeptoriaReferenceHumidityModel();
+        String result = instance.getLicense();
+        assertNotNull(result);
+    }
+
+    /**
+     * Test of getCopyright method, of class SeptoriaReferenceHumidityModel.
+     */
+    //@org.junit.jupiter.api.Test
+    public void testGetCopyright() {
+        System.out.println("getCopyright");
+        SeptoriaReferenceHumidityModel instance = new SeptoriaReferenceHumidityModel();
+        String result = instance.getCopyright();
+        assertNotNull(result);
+    }
+
+    /**
+     * Test of getModelDescription method, of class SeptoriaReferenceHumidityModel.
+     */
+    //@org.junit.jupiter.api.Test
+    public void testGetModelDescription_0args() {
+        System.out.println("getModelDescription");
+        SeptoriaReferenceHumidityModel instance = new SeptoriaReferenceHumidityModel();
+        String result = instance.getModelDescription();
+        assertNotNull(result);
+    }
+
+    /**
+     * Test of getModelDescription method, of class SeptoriaReferenceHumidityModel.
+     */
+    //@org.junit.jupiter.api.Test
+    public void testGetModelDescription_String() {
+        System.out.println("getModelDescription");
+        String language = "";
+        SeptoriaReferenceHumidityModel instance = new SeptoriaReferenceHumidityModel();
+        String result = instance.getModelDescription(language);
+        assertNotNull(result);
+    }
+
+    /**
+     * Test of getWarningStatusInterpretation method, of class SeptoriaReferenceHumidityModel.
+     */
+    //@org.junit.jupiter.api.Test
+    public void testGetWarningStatusInterpretation_0args() {
+        System.out.println("getWarningStatusInterpretation");
+        SeptoriaReferenceHumidityModel instance = new SeptoriaReferenceHumidityModel();
+        String result = instance.getWarningStatusInterpretation();
+        assertNotNull(result);
+    }
+
+    /**
+     * Test of getWarningStatusInterpretation method, of class SeptoriaReferenceHumidityModel.
+     */
+    //@org.junit.jupiter.api.Test
+    public void testGetWarningStatusInterpretation_String() {
+        System.out.println("getWarningStatusInterpretation");
+        String language = "";
+        SeptoriaReferenceHumidityModel instance = new SeptoriaReferenceHumidityModel();
+        String result = instance.getWarningStatusInterpretation(language);
+        assertNotNull(result);
+    }
+
+    /**
+     * Test of getModelUsage method, of class SeptoriaReferenceHumidityModel.
+     */
+    //@org.junit.jupiter.api.Test
+    public void testGetModelUsage_0args() {
+        System.out.println("getModelUsage");
+        SeptoriaReferenceHumidityModel instance = new SeptoriaReferenceHumidityModel();
+        String result = instance.getModelUsage();
+        assertNotNull(result);
+    }
+
+    /**
+     * Test of getModelUsage method, of class SeptoriaReferenceHumidityModel.
+     */
+    //@org.junit.jupiter.api.Test
+    public void testGetModelUsage_String() {
+        System.out.println("getModelUsage");
+        String language = "";
+        SeptoriaReferenceHumidityModel instance = new SeptoriaReferenceHumidityModel();
+        String result = instance.getModelUsage(language);
+        assertNotNull(result);
+    }
+
+    /**
+     * Test of getSampleConfig method, of class SeptoriaReferenceHumidityModel.
+     */
+    //@org.junit.jupiter.api.Test
+    public void testGetSampleConfig() {
+        System.out.println("getSampleConfig");
+        SeptoriaReferenceHumidityModel instance = new SeptoriaReferenceHumidityModel();
+        String result = instance.getSampleConfig();
+        assertNotNull(result);
+    }
+
+}