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Commit ff849cec authored by Tor-Einar Skog's avatar Tor-Einar Skog
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Make sure RISK never is displayed as negative

parent e1bbe1f0
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2 merge requests!12Deploy to prod,!11Make sure RISK is never displayed as negative
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Stage: test
This commit is part of merge request !12. Comments created here will be created in the context of that merge request.
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src/main/java/no/nibio/vips/model/naerstadmodel/NaerstadModel.java
+ 36
− 15
Edit View file @ ff849cec
...@@ -28,8 +28,10 @@ import java.util.Calendar; ...@@ -28,8 +28,10 @@ import java.util.Calendar;
import java.util.Collections; import java.util.Collections;
import java.util.Date; import java.util.Date;
import java.util.List; import java.util.List;
import java.util.logging.Level;
import java.util.logging.Logger; import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import no.nibio.vips.i18n.I18nImpl; import no.nibio.vips.i18n.I18nImpl;
import no.nibio.vips.entity.ModelConfiguration; import no.nibio.vips.entity.ModelConfiguration;
import no.nibio.vips.entity.WeatherObservation; import no.nibio.vips.entity.WeatherObservation;
...@@ -51,7 +53,7 @@ import no.nibio.vips.util.WeatherUtil; ...@@ -51,7 +53,7 @@ import no.nibio.vips.util.WeatherUtil;
* @author Tor-Einar Skog <tor-einar.skog@nibio.no> * @author Tor-Einar Skog <tor-einar.skog@nibio.no>
*/ */
public class NaerstadModel extends I18nImpl implements Model{ public class NaerstadModel extends I18nImpl implements Model{
private static Logger LOGGER = LoggerFactory.getLogger(NaerstadModel.class);
private boolean DEBUG = false; private boolean DEBUG = false;
private List<WeatherObservation> TM; private List<WeatherObservation> TM;
...@@ -97,7 +99,10 @@ public class NaerstadModel extends I18nImpl implements Model{ ...@@ -97,7 +99,10 @@ public class NaerstadModel extends I18nImpl implements Model{
*/ */
cal.add(Calendar.DATE, 1); cal.add(Calendar.DATE, 1);
DecimalFormat dFormat = new DecimalFormat("###.##"); DecimalFormat dFormat = new DecimalFormat("###.##");
//System.out.println("RESULTS: " + this.backgroundData.toString()); if(DEBUG)
{
System.out.println("RESULTS: " + this.backgroundData.toString());
}
Date thePresent = cal.getTime(); Date thePresent = cal.getTime();
while(thePresent.compareTo(calculationEnd) <= 0) while(thePresent.compareTo(calculationEnd) <= 0)
{ {
...@@ -110,6 +115,10 @@ public class NaerstadModel extends I18nImpl implements Model{ ...@@ -110,6 +115,10 @@ public class NaerstadModel extends I18nImpl implements Model{
{ {
break; break;
} }
// The risk value should never be displayed as negative
RISK = Math.max(0.0, RISK);
if(this.DEBUG) if(this.DEBUG)
System.out.println("RISK(" + thePresent + ")=" + RISK); System.out.println("RISK(" + thePresent + ")=" + RISK);
...@@ -147,7 +156,7 @@ public class NaerstadModel extends I18nImpl implements Model{ ...@@ -147,7 +156,7 @@ public class NaerstadModel extends I18nImpl implements Model{
if(e instanceof ModelExcecutionException) if(e instanceof ModelExcecutionException)
throw e; throw e;
// Log the error // Log the error
Logger.getLogger(NaerstadModel.class.getName()).log(Level.SEVERE, null, e); LOGGER.error(e.getMessage(), e);
throw new ModelExcecutionException("An exception occurred. Message is " + e.getMessage() + " See logs for details"); throw new ModelExcecutionException("An exception occurred. Message is " + e.getMessage() + " See logs for details");
} }
} }
...@@ -338,13 +347,23 @@ public class NaerstadModel extends I18nImpl implements Model{ ...@@ -338,13 +347,23 @@ public class NaerstadModel extends I18nImpl implements Model{
* Sets up the collections * Sets up the collections
*/ */
private void initCollections(){ private void initCollections(){
this.BT = new ArrayList(); this.BT = new ArrayList<>();
this.Q0 = new ArrayList(); this.Q0 = new ArrayList<>();
this.RR = new ArrayList(); this.RR = new ArrayList<>();
this.TM = new ArrayList(); this.TM = new ArrayList<>();
this.UM = new ArrayList(); this.UM = new ArrayList<>();
} }
/**
* Survival factor of released spores
* @param Q0 Solar radiation value (Hourly w/sqm)
* @return
*/
public Double getSFRS(Double Q0)
{
return (1 - (Q0 - 270)/540)/1.5;
}
/** /**
* Calculates all background data for the model * Calculates all background data for the model
* Depends on continuous weather data. This should be validated beforehand. * Depends on continuous weather data. This should be validated beforehand.
...@@ -419,7 +438,7 @@ public class NaerstadModel extends I18nImpl implements Model{ ...@@ -419,7 +438,7 @@ public class NaerstadModel extends I18nImpl implements Model{
Double VAS = ((VASLastHour * 0.95 * (1-((WVD-220)/6000))) + SPH) / (1 + (RRliste[i].getValue() * 0.3)); Double VAS = ((VASLastHour * 0.95 * (1-((WVD-220)/6000))) + SPH) / (1 + (RRliste[i].getValue() * 0.3));
if(DEBUG) if(DEBUG)
{ {
//System.out.println(VAS + " = ((" + VASLastHour + " * 0.95 * (1-((" + WVD + "-220)/6000))) + " + SPH+ ") / (1 + (" + RRliste[i].getValue() + " * 0.3));"); System.out.println(VAS + " = ((" + VASLastHour + " * 0.95 * (1-((" + WVD + "-220)/6000))) + " + SPH+ ") / (1 + (" + RRliste[i].getValue() + " * 0.3));");
} }
this.backgroundData.setParamDoubleValueForDate(TMliste[i].getTimeMeasured(), NaerstadModelBackgroundDataMatrix.VAS, VAS); this.backgroundData.setParamDoubleValueForDate(TMliste[i].getTimeMeasured(), NaerstadModelBackgroundDataMatrix.VAS, VAS);
...@@ -437,14 +456,16 @@ public class NaerstadModel extends I18nImpl implements Model{ ...@@ -437,14 +456,16 @@ public class NaerstadModel extends I18nImpl implements Model{
// IRTA (Inhibition of Release To Air) // IRTA (Inhibition of Release To Air)
Double IRTA = 1-((double) BTliste[i].getValue() / 80); Double IRTA = 1-((double) BTliste[i].getValue() / 80);
// SFRS (Survival Factor of Released Spores) // SFRS (Survival Factor of Released Spores)
Double SFRS = (1 - (Q0liste[i].getValue() - 270)/540)/1.5; Double SFRS = this.getSFRS(Q0liste[i].getValue());
VRS = this.getVRS(VAS, RTA, IRTA, SFRS, VRSLastHour, (double) RRliste[i].getValue(), WHSLastHour);
if(DEBUG) if(DEBUG)
{ {
//System.out.println(TMliste[i].getTimeMeasured().toString() + ": SPH=" + SPH + ", RR[t]=" + RRliste[i].getValue() + ", WVD=" + WVD + ", VAS=" + VAS + ", RTA=" + RTA + ", IRTA=" + IRTA + ", SFRS=" + SFRS + ", VRSLastHour=" + VRSLastHour + ", WHSLastHour=" + WHSLastHour); System.out.println(TMliste[i].getTimeMeasured().toString() + ": SPH=" + SPH + ", RR[t]=" + RRliste[i].getValue() + ", WVD=" + WVD + ", VAS=" + VAS + ", RTA=" + RTA + ", IRTA=" + IRTA + ", VRS = " + VRS + ", SFRS=" + SFRS + ", VRSLastHour=" + VRSLastHour + ", WHSLastHour=" + WHSLastHour);
} }
VRS = this.getVRS(VAS, RTA, IRTA, SFRS, VRSLastHour, (double) RRliste[i].getValue(), WHSLastHour);
} }
} }
this.backgroundData.setParamDoubleValueForDate(TMliste[i].getTimeMeasured(), NaerstadModelBackgroundDataMatrix.VRS, VRS); this.backgroundData.setParamDoubleValueForDate(TMliste[i].getTimeMeasured(), NaerstadModelBackgroundDataMatrix.VRS, VRS);
......
src/test/java/no/nibio/vips/model/naerstadmodel/NaerstadModelTest.java
+ 68
− 5
Edit View file @ ff849cec
...@@ -110,10 +110,11 @@ public class NaerstadModelTest extends TestCase { ...@@ -110,10 +110,11 @@ public class NaerstadModelTest extends TestCase {
* Test of getResult method, of class NaerstadModel. * Test of getResult method, of class NaerstadModel.
*/ */
public void testGetResult() { public void testGetResult() {
try { try {
System.out.println("getResult"); System.out.println("getResult");
NaerstadModel instance = new NaerstadModel(); NaerstadModel instance = new NaerstadModel();
ModelConfiguration config = this.getConfiguration(); ModelConfiguration config = this.getConfiguration("/JSONWeatherData.json");
instance.setConfiguration(config); instance.setConfiguration(config);
//System.out.println(config.toJSON()); //System.out.println(config.toJSON());
List<Result> results; List<Result> results;
...@@ -135,9 +136,40 @@ public class NaerstadModelTest extends TestCase { ...@@ -135,9 +136,40 @@ public class NaerstadModelTest extends TestCase {
}*/ }*/
assertTrue(results.size() == 209); assertTrue(results.size() == 209);
} catch (ConfigValidationException | ModelExcecutionException ex) { } catch (ConfigValidationException | ModelExcecutionException ex) {
fail("Exception: " + ex.getMessage()); fail("Exception: " + ex.getMessage());
} }
}
public void testGetResultSwedishData()
{
try{
System.out.println("getResultSwedishData");
NaerstadModel instance = new NaerstadModel();
ModelConfiguration config = this.getConfiguration("/SLU_Faltforsk_GlyttingeGRID_2024.json");
instance.setConfiguration(config);
//System.out.println(config.toJSON());
List<Result> results;
results = instance.getResult();
/*for(int i=500;i<550;i++)
{
System.out.println(results.get(i));
}*/
//results.forEach(r->System.out.println(r));
//System.out.println("Result size=" + results.size());
// Check for results list length
assertTrue(results.size() == 659);
// Check risk value for a result
Result r = results.get(549);
assertEquals(3.66, Double.parseDouble(r.getValue(instance.getModelId().toString(), NaerstadModelBackgroundDataMatrix.RISK)));
// Check risk value that would have been negative unless capped
r = results.get(results.size()-5);
assertEquals(0.0, Double.parseDouble(r.getValue(instance.getModelId().toString(), NaerstadModelBackgroundDataMatrix.RISK)));
}
catch (ConfigValidationException | ModelExcecutionException ex) {
fail("Exception: " + ex.getMessage());
}
} }
/** /**
...@@ -219,19 +251,19 @@ public class NaerstadModelTest extends TestCase { ...@@ -219,19 +251,19 @@ public class NaerstadModelTest extends TestCase {
System.out.println("setConfiguration"); System.out.println("setConfiguration");
NaerstadModel instance = new NaerstadModel(); NaerstadModel instance = new NaerstadModel();
instance.setConfiguration(this.getConfiguration()); instance.setConfiguration(this.getConfiguration("/JSONWeatherData.json"));
} catch (ConfigValidationException ex) { } catch (ConfigValidationException ex) {
fail("Error in configuration:" + ex.getMessage()); fail("Error in configuration:" + ex.getMessage());
} }
} }
private ModelConfiguration getConfiguration() private ModelConfiguration getConfiguration(String fileName)
{ {
try { try {
ModelConfiguration config = new ModelConfiguration(); ModelConfiguration config = new ModelConfiguration();
config.setModelId("NAERSTADMO"); config.setModelId("NAERSTADMO");
BufferedInputStream inputStream = new BufferedInputStream(this.getClass().getResourceAsStream("/JSONWeatherData.json")); BufferedInputStream inputStream = new BufferedInputStream(this.getClass().getResourceAsStream(fileName));
JsonFactory f = new MappingJsonFactory(); JsonFactory f = new MappingJsonFactory();
JsonParser jp = f.createParser(inputStream); JsonParser jp = f.createParser(inputStream);
JsonNode all = jp.readValueAsTree(); JsonNode all = jp.readValueAsTree();
...@@ -366,7 +398,38 @@ public class NaerstadModelTest extends TestCase { ...@@ -366,7 +398,38 @@ public class NaerstadModelTest extends TestCase {
NaerstadModel instance = new NaerstadModel(); NaerstadModel instance = new NaerstadModel();
Double expResult = 3.0818301132374937; Double expResult = 3.0818301132374937;
Double result = instance.getVRS(VAS, RTA, IRTA, SFRS, VRSLastHour, RR, WHSLastHour); Double result = instance.getVRS(VAS, RTA, IRTA, SFRS, VRSLastHour, RR, WHSLastHour);
assertEquals(expResult, result); assertEquals(expResult, result);
VAS = 1.8620744816150898;
RTA = 2;
IRTA = 1.0;
SFRS = -0.033086419753086314;
VRSLastHour = 3.625814763513186;
RR = 0.0;
WHSLastHour = 0;
result = instance.getVRS(VAS, RTA, IRTA, SFRS, VRSLastHour, RR, WHSLastHour);
assertEquals(-0.23718572357236287, result);
}
public void testGetSFRS() {
System.out.println("getSFRS");
Double Q0 = 0.0;
NaerstadModel instance = new NaerstadModel();
Double SFRS = instance.getSFRS(Q0);
Double expected = 1.0;
assertEquals(expected, SFRS);
Q0=836.8;
SFRS = instance.getSFRS(Q0);
expected = -0.033086419753086314;
assertEquals(expected, SFRS);
} }
/** /**
......
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