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Commit 2f1279b7 authored by Simeon Rossmann's avatar Simeon Rossmann
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Initial_data_dump BigOld

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"Sample" "Primer_Read" "Forward" "Complement" "Reverse" "RevComp"
"1-oomy_S259_L001_R1_001.fastq.gz 1-oomy_S259_L001_R2_001.fastq.gz" "FWD_primer_R1_Reads" 0 0 0 0
"1-oomy_S259_L001_R1_001.fastq.gz 1-oomy_S259_L001_R2_001.fastq.gz" "FWD_primer_R2_Reads" 0 0 0 31163
"1-oomy_S259_L001_R1_001.fastq.gz 1-oomy_S259_L001_R2_001.fastq.gz" "REV_primer_R1_Reads" 0 0 0 33047
"1-oomy_S259_L001_R1_001.fastq.gz 1-oomy_S259_L001_R2_001.fastq.gz" "REV_primer_R2_Reads" 0 0 0 0
"10-oomy_S278_L001_R1_001.fastq.gz 10-oomy_S278_L001_R2_001.fastq.gz" "FWD_primer_R1_Reads" 0 0 0 0
"10-oomy_S278_L001_R1_001.fastq.gz 10-oomy_S278_L001_R2_001.fastq.gz" "FWD_primer_R2_Reads" 0 0 0 1860
"10-oomy_S278_L001_R1_001.fastq.gz 10-oomy_S278_L001_R2_001.fastq.gz" "REV_primer_R1_Reads" 0 0 0 2020
"10-oomy_S278_L001_R1_001.fastq.gz 10-oomy_S278_L001_R2_001.fastq.gz" "REV_primer_R2_Reads" 0 0 0 0
"11-oomy_S285_L001_R1_001.fastq.gz 11-oomy_S285_L001_R2_001.fastq.gz" "FWD_primer_R1_Reads" 0 0 0 0
"11-oomy_S285_L001_R1_001.fastq.gz 11-oomy_S285_L001_R2_001.fastq.gz" "FWD_primer_R2_Reads" 0 0 0 36198
"11-oomy_S285_L001_R1_001.fastq.gz 11-oomy_S285_L001_R2_001.fastq.gz" "REV_primer_R1_Reads" 0 0 0 40284
"11-oomy_S285_L001_R1_001.fastq.gz 11-oomy_S285_L001_R2_001.fastq.gz" "REV_primer_R2_Reads" 0 0 0 0
"12-oomy_S292_L001_R1_001.fastq.gz 12-oomy_S292_L001_R2_001.fastq.gz" "FWD_primer_R1_Reads" 0 0 0 0
"12-oomy_S292_L001_R1_001.fastq.gz 12-oomy_S292_L001_R2_001.fastq.gz" "FWD_primer_R2_Reads" 0 0 0 24710
"12-oomy_S292_L001_R1_001.fastq.gz 12-oomy_S292_L001_R2_001.fastq.gz" "REV_primer_R1_Reads" 0 0 0 26833
"12-oomy_S292_L001_R1_001.fastq.gz 12-oomy_S292_L001_R2_001.fastq.gz" "REV_primer_R2_Reads" 0 0 0 0
"13-oomy_S298_L001_R1_001.fastq.gz 13-oomy_S298_L001_R2_001.fastq.gz" "FWD_primer_R1_Reads" 0 0 0 0
"13-oomy_S298_L001_R1_001.fastq.gz 13-oomy_S298_L001_R2_001.fastq.gz" "FWD_primer_R2_Reads" 0 0 0 17946
"13-oomy_S298_L001_R1_001.fastq.gz 13-oomy_S298_L001_R2_001.fastq.gz" "REV_primer_R1_Reads" 0 0 0 19913
"13-oomy_S298_L001_R1_001.fastq.gz 13-oomy_S298_L001_R2_001.fastq.gz" "REV_primer_R2_Reads" 0 0 0 0
"14-oomy_S304_L001_R1_001.fastq.gz 14-oomy_S304_L001_R2_001.fastq.gz" "FWD_primer_R1_Reads" 0 0 0 0
"14-oomy_S304_L001_R1_001.fastq.gz 14-oomy_S304_L001_R2_001.fastq.gz" "FWD_primer_R2_Reads" 0 0 0 18741
"14-oomy_S304_L001_R1_001.fastq.gz 14-oomy_S304_L001_R2_001.fastq.gz" "REV_primer_R1_Reads" 0 0 0 20732
"14-oomy_S304_L001_R1_001.fastq.gz 14-oomy_S304_L001_R2_001.fastq.gz" "REV_primer_R2_Reads" 0 0 0 0
"15-oomy_S261_L001_R1_001.fastq.gz 15-oomy_S261_L001_R2_001.fastq.gz" "FWD_primer_R1_Reads" 0 0 0 0
"15-oomy_S261_L001_R1_001.fastq.gz 15-oomy_S261_L001_R2_001.fastq.gz" "FWD_primer_R2_Reads" 0 0 0 32214
"15-oomy_S261_L001_R1_001.fastq.gz 15-oomy_S261_L001_R2_001.fastq.gz" "REV_primer_R1_Reads" 0 0 0 36002
"15-oomy_S261_L001_R1_001.fastq.gz 15-oomy_S261_L001_R2_001.fastq.gz" "REV_primer_R2_Reads" 0 0 0 0
"16-oomy_S270_L001_R1_001.fastq.gz 16-oomy_S270_L001_R2_001.fastq.gz" "FWD_primer_R1_Reads" 0 0 0 0
"16-oomy_S270_L001_R1_001.fastq.gz 16-oomy_S270_L001_R2_001.fastq.gz" "FWD_primer_R2_Reads" 0 0 0 25922
"16-oomy_S270_L001_R1_001.fastq.gz 16-oomy_S270_L001_R2_001.fastq.gz" "REV_primer_R1_Reads" 0 0 0 28579
"16-oomy_S270_L001_R1_001.fastq.gz 16-oomy_S270_L001_R2_001.fastq.gz" "REV_primer_R2_Reads" 0 0 0 0
"17-oomy_S279_L001_R1_001.fastq.gz 17-oomy_S279_L001_R2_001.fastq.gz" "FWD_primer_R1_Reads" 0 0 0 0
"17-oomy_S279_L001_R1_001.fastq.gz 17-oomy_S279_L001_R2_001.fastq.gz" "FWD_primer_R2_Reads" 0 0 0 39123
"17-oomy_S279_L001_R1_001.fastq.gz 17-oomy_S279_L001_R2_001.fastq.gz" "REV_primer_R1_Reads" 0 0 0 43392
"17-oomy_S279_L001_R1_001.fastq.gz 17-oomy_S279_L001_R2_001.fastq.gz" "REV_primer_R2_Reads" 0 0 0 0
"18-oomy_S286_L001_R1_001.fastq.gz 18-oomy_S286_L001_R2_001.fastq.gz" "FWD_primer_R1_Reads" 0 0 0 0
"18-oomy_S286_L001_R1_001.fastq.gz 18-oomy_S286_L001_R2_001.fastq.gz" "FWD_primer_R2_Reads" 0 0 0 33714
"18-oomy_S286_L001_R1_001.fastq.gz 18-oomy_S286_L001_R2_001.fastq.gz" "REV_primer_R1_Reads" 0 0 0 37236
"18-oomy_S286_L001_R1_001.fastq.gz 18-oomy_S286_L001_R2_001.fastq.gz" "REV_primer_R2_Reads" 0 0 0 0
"19-oomy_S293_L001_R1_001.fastq.gz 19-oomy_S293_L001_R2_001.fastq.gz" "FWD_primer_R1_Reads" 0 0 0 0
"19-oomy_S293_L001_R1_001.fastq.gz 19-oomy_S293_L001_R2_001.fastq.gz" "FWD_primer_R2_Reads" 0 0 0 23744
"19-oomy_S293_L001_R1_001.fastq.gz 19-oomy_S293_L001_R2_001.fastq.gz" "REV_primer_R1_Reads" 0 0 0 25629
"19-oomy_S293_L001_R1_001.fastq.gz 19-oomy_S293_L001_R2_001.fastq.gz" "REV_primer_R2_Reads" 0 0 0 0
"2-oomy_S268_L001_R1_001.fastq.gz 2-oomy_S268_L001_R2_001.fastq.gz" "FWD_primer_R1_Reads" 0 0 0 0
"2-oomy_S268_L001_R1_001.fastq.gz 2-oomy_S268_L001_R2_001.fastq.gz" "FWD_primer_R2_Reads" 0 0 0 26829
"2-oomy_S268_L001_R1_001.fastq.gz 2-oomy_S268_L001_R2_001.fastq.gz" "REV_primer_R1_Reads" 0 0 0 29247
"2-oomy_S268_L001_R1_001.fastq.gz 2-oomy_S268_L001_R2_001.fastq.gz" "REV_primer_R2_Reads" 0 0 0 0
"20-oomy_S299_L001_R1_001.fastq.gz 20-oomy_S299_L001_R2_001.fastq.gz" "FWD_primer_R1_Reads" 0 0 0 0
"20-oomy_S299_L001_R1_001.fastq.gz 20-oomy_S299_L001_R2_001.fastq.gz" "FWD_primer_R2_Reads" 0 0 0 17551
"20-oomy_S299_L001_R1_001.fastq.gz 20-oomy_S299_L001_R2_001.fastq.gz" "REV_primer_R1_Reads" 0 0 0 18602
"20-oomy_S299_L001_R1_001.fastq.gz 20-oomy_S299_L001_R2_001.fastq.gz" "REV_primer_R2_Reads" 0 0 0 0
"21-oomy_S305_L001_R1_001.fastq.gz 21-oomy_S305_L001_R2_001.fastq.gz" "FWD_primer_R1_Reads" 0 0 0 0
"21-oomy_S305_L001_R1_001.fastq.gz 21-oomy_S305_L001_R2_001.fastq.gz" "FWD_primer_R2_Reads" 0 0 0 24209
"21-oomy_S305_L001_R1_001.fastq.gz 21-oomy_S305_L001_R2_001.fastq.gz" "REV_primer_R1_Reads" 0 0 0 26269
"21-oomy_S305_L001_R1_001.fastq.gz 21-oomy_S305_L001_R2_001.fastq.gz" "REV_primer_R2_Reads" 0 0 0 0
"22-oomy_S262_L001_R1_001.fastq.gz 22-oomy_S262_L001_R2_001.fastq.gz" "FWD_primer_R1_Reads" 0 0 0 0
"22-oomy_S262_L001_R1_001.fastq.gz 22-oomy_S262_L001_R2_001.fastq.gz" "FWD_primer_R2_Reads" 0 0 0 17826
"22-oomy_S262_L001_R1_001.fastq.gz 22-oomy_S262_L001_R2_001.fastq.gz" "REV_primer_R1_Reads" 0 0 0 19367
"22-oomy_S262_L001_R1_001.fastq.gz 22-oomy_S262_L001_R2_001.fastq.gz" "REV_primer_R2_Reads" 0 0 0 0
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"input" "filtered" "denoisedF" "denoisedR" "merged" "nonchim" "percent_retained"
"1-oomy" 85907 33183 33060 33008 24817 24817 28.8882163269582
"10-oomy" 101128 19966 19896 19780 19725 19725 19.5049837829286
"11-oomy" 67297 37629 37521 37471 34206 34206 50.8284173142934
"12-oomy" 41557 25763 25687 25639 23225 23154 55.7162451572539
"13-oomy" 71622 25880 25774 25693 22863 22794 31.8254167713831
"14-oomy" 80721 26353 26270 26088 23733 23733 29.4012710447096
"15-oomy" 51981 32877 32811 32565 29335 29335 56.4340816836921
"16-oomy" 47519 27368 27291 27097 24215 24215 50.9585639428439
"17-oomy" 81116 44131 43919 43936 37674 37606 46.3607672962178
"18-oomy" 56157 34810 34675 34640 30786 30679 54.6307673130687
"19-oomy" 94819 33513 33233 33231 30745 30745 32.4249359305624
"2-oomy" 75965 28155 28061 27968 23715 23715 31.218324228263
"20-oomy" 63277 24810 24718 24624 23328 23328 36.8664759707319
"21-oomy" 81131 33646 33553 33439 31015 30839 38.01136433669
"22-oomy" 55975 20754 20586 20490 18319 18227 32.5627512282269
"23-oomy" 46133 25467 25389 25313 19486 19486 42.238744499599
"24-oomy" 82867 32811 32722 32465 24702 24702 29.8092123523236
"25-oomy" 84489 57461 57348 57322 41408 41408 49.0099302867829
"26-oomy" 66357 35202 35072 35066 24473 24473 36.8808113688081
"27-oomy" 82768 53187 53043 52756 38802 38802 46.8804368838198
"28-oomy" 67103 34424 34314 34296 27263 27263 40.6285859052501
"29-oomy" 51308 31949 31759 31816 24022 24022 46.8192094800031
"3-oomy" 99250 58776 58667 58447 36258 36258 36.5319899244332
"30-oomy" 35575 16929 16891 16622 13122 13122 36.8854532677442
"31-oomy" 76422 16439 16349 16257 12924 11603 15.1828007641779
"32-oomy" 89821 64163 64031 63713 51871 51871 57.7493013883168
"33-oomy" 78771 30934 30859 30606 26362 26362 33.4666311205901
"34-oomy" 71857 38698 38617 38391 32235 32060 44.616390887457
"35-oomy" 82429 10860 10812 10759 9696 9689 11.7543582962307
"36-oomy" 40987 29154 29052 28901 23437 23393 57.0741942567156
"37-oomy" 34437 23004 22859 22701 19870 19870 57.6995673258414
"38-oomy" 58719 39450 39293 39192 31341 31341 53.3745465692536
"39-oomy" 53649 34477 34391 33958 27035 27035 50.3923651885403
"4-oomy" 100345 33670 33608 33290 27083 27006 26.9131496337635
"40-oomy" 46095 31773 31682 31668 24600 24567 53.2964529775464
"41-oomy" 52064 33819 33515 33385 26696 26620 51.1293792255685
"42-oomy" 39566 28288 28188 28056 23343 23343 58.9976242228176
"43-oomy" 71681 47668 47482 47205 35948 35913 50.1011425621852
"44-oomy" 48066 27333 27173 27131 23266 23266 48.4042774518371
"45-oomy" 71570 45759 45588 45131 37904 37833 52.8615341623585
"46-oomy" 78449 60139 59752 59824 43713 43713 55.7215515812821
"5-oomy" 43587 32263 32235 32189 25800 25800 59.1919609057747
"6-oomy" 55994 31126 31059 30867 25252 25082 44.7940850805443
"7-oomy" 78524 46217 46167 46074 39315 39266 50.0050939840049
"8-oomy" 40541 25494 25430 25369 19591 19591 48.3239189955847
"9-oomy" 50587 4663 4624 4604 4480 4480 8.85603020538874
"Posk1-oomy" 1e+05 69188 69051 69061 66641 58518 58.518
"Posk2-oomy" 158687 117521 117317 117311 114386 98667 62.1771159578289
"Posk3-oomy" 107300 75056 74914 75009 72708 64504 60.1155638397018
"Posk4-oomy" 118546 84581 84296 84430 81641 70739 59.6721947598401
"NegK2-oomy" 1 0 NA NA NA NA NA
"V3-oomy" 1 0 NA NA NA NA NA
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