diff --git a/SRA submission/attributes_table.tsv b/SRA submission/attributes_table.tsv new file mode 100644 index 0000000000000000000000000000000000000000..4e14589d6cfbaab7cf58ca1e9400f1732c9ffb24 --- /dev/null +++ b/SRA submission/attributes_table.tsv @@ -0,0 +1,25 @@ +sample_name sample_title bioproject_accession organism chem_administration collection_date env_broad_scale env_local_scale env_medium food_source geo_loc_name host host_age host_common_name host_genotype host_height host_length host_life_stage host_phenotype host_taxid host_tot_mass lat_lon microbial_biomass microbial_biomass_meth pathogenicity samp_store_dur samp_store_loc sieving soil_type soil_type_meth store_cond temp adjacent_environment agrochem_addition ances_data anim_water_method annual_precpt annual_temp biotic_relationship climate_environment collection_method crop_rotation crop_yield cult_isol_date cur_land_use cur_vegetation cur_vegetation_meth drainage_class elev enrichment_protocol extreme_event fao_class farm_equip farm_equip_san farm_equip_shared farm_water_source fertilizer_admin fire flooding food_harvest_proc food_prod_char food_product_type food_trav_mode food_trav_vehic fungicide_regm gaseous_environment genetic_mod heavy_metals_meth herbicide_regm horizon_meth host_disease host_dry_mass host_subspecf_genlin host_symbiont humidity isol_growth_condt isolation_source link_class_info link_climate_info local_class local_class_meth lot_number misc_param neg_cont_type non_mineral_nutr_regm omics_observ_id organism_count oxy_stat_samp perturbation pesticide_regm ph_meth ph_regm photosynt_activ photosynt_activ_meth plant_growth_med plant_product plant_struc plant_water_method porosity pos_cont_type pres_animal_insect previous_land_use previous_land_use_meth profile_position rel_location rel_to_oxygen root_med_carbon root_med_macronutr root_med_ph salt_regm samp_collect_device samp_collect_method samp_mat_process samp_pooling samp_size samp_store_temp samp_vol_we_dna_ext season season_environment season_humidity season_precpt season_temp size_frac size_frac_low size_frac_up slope_aspect slope_gradient soil_conductivity soil_cover soil_depth soil_horizon soil_ph soil_temp soil_text_measure soil_texture_meth solar_irradiance source_material_id spikein_strain standing_water_regm tillage tot_carb tot_nitro tot_nitro_cont_meth tot_org_c_meth tot_org_carb tot_phosp trophic_level water_ph water_source_shared water_temp_regm watering_regm description normalized_difference_vegetation_index Normalized Difference Vegetation Index +S-01 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil 0.491 +S-02 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil 0.509 +S-03 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil 0.516 +S-04 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil 0.555 +S-05 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil 0.485 +S-06 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil 0.495 +S-07 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil 0.467 +S-08 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil 0.425 +S-09 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil 0.038 +S-10 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil 0.12 +S-11 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil 0.096 +S-12 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil 0.413 +S-13 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil 0.014 +S-14 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil -0.211 +S-15 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil -0.219 +S-16 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil 0.597 +S-17 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil 0.601 +S-18 soil metagenome not collected 10-Aug-2021 temperate biome [ENVO:01001831] area of cropland [ENVO:01000892] soil organic matter [ENVO_04000008] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected max. two weeks cold room homogenization of 25 cores taken with an auger to 20 cm depth, covering a surface area of 1 m2 not collected not collected individual cores were stored at 4 C not collected potato field soil 0.498 +mock-nem synthetic metagenome not applicable 10-Aug-2021 cultured organic material [ENVO:01001820] cultured organic material [ENVO:01001820] cultured organic material [ENVO:01001820] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected not applicable freezer not applicable not collected not collected not applicable not collected DNA blend of 20 nematode species nematode mock community +mock-fungi synthetic metagenome not applicable 10-Aug-2021 cultured organic material [ENVO:01001820] cultured organic material [ENVO:01001820] cultured organic material [ENVO:01001820] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected not applicable freezer not applicable not collected not collected not applicable not collected DNA blend of 37 fungal isolates fungal mock community +mock-oomyc synthetic metagenome not applicable 10-Aug-2021 cultured organic material [ENVO:01001820] cultured organic material [ENVO:01001820] cultured organic material [ENVO:01001820] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected not applicable freezer not applicable not collected not collected not applicable not collected DNA blend of 13 oomycete and 11 fungal isolates oomycete mock community +mock-bac synthetic metagenome not applicable 10-Aug-2021 cultured organic material [ENVO:01001820] cultured organic material [ENVO:01001820] cultured organic material [ENVO:01001820] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected not applicable freezer not applicable not collected not collected not applicable not collected DNA blend of 20 bacterial isolates bacterial mock community +NTC soil metagenome not applicable 10-Aug-2021 cultured organic material [ENVO:01001820] cultured organic material [ENVO:01001820] cultured organic material [ENVO:01001820] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected not applicable not applicable not applicable not collected not collected not applicable not collected DNA free PCR no template control +water soil metagenome not applicable 10-Aug-2021 cultured organic material [ENVO:01001820] cultured organic material [ENVO:01001820] cultured organic material [ENVO:01001820] not applicable Norway not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not applicable not collected not collected not collected not collected not applicable not applicable not applicable not collected not collected not applicable not collected distilled water, no reagents just water, no reagents