From 3a80ec5d6a4cf85f0badbdcc434049aa87f6f180 Mon Sep 17 00:00:00 2001 From: Simeon <51403284+simeross@users.noreply.github.com> Date: Thu, 28 Nov 2024 09:34:10 +0100 Subject: [PATCH] SRA submission fix --- SRA submission/SRA_submission_edited.tsv | 4 ---- 1 file changed, 4 deletions(-) diff --git a/SRA submission/SRA_submission_edited.tsv b/SRA submission/SRA_submission_edited.tsv index e37bc71..50ffc19 100644 --- a/SRA submission/SRA_submission_edited.tsv +++ b/SRA submission/SRA_submission_edited.tsv @@ -123,13 +123,10 @@ S-07 NIBIO_mpt_OITS_S107 Metabarcoding of Norwegian potato field soil: oomycete S-08 NIBIO_mpt_OITS_S110 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq 8-oits_S110_L001_R1_001.fastq.gz 8-oits_S110_L001_R2_001.fastq.gz S-09 NIBIO_mpt_OITS_S86 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq 9-oits_S86_L001_R1_001.fastq.gz 9-oits_S86_L001_R2_001.fastq.gz NTC NIBIO_mpt_OITS_S103 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq NegativK-1-oits_S103_L001_R1_001.fastq.gz NegativK-1-oits_S103_L001_R2_001.fastq.gz -NTC NIBIO_mpt_OITS_S109 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq NegativK-3-oits_S109_L001_R1_001.fastq.gz NegativK-3-oits_S109_L001_R2_001.fastq.gz -NTC NIBIO_mpt_OITS_S112 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq NegativK-4-oits_S112_L001_R1_001.fastq.gz NegativK-4-oits_S112_L001_R2_001.fastq.gz mock-oomyc NIBIO_mpt_OITS_S88 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq PositivK-1-oits_S88_L001_R1_001.fastq.gz PositivK-1-oits_S88_L001_R2_001.fastq.gz mock-oomyc NIBIO_mpt_OITS_S92 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq PositivK-2-oits_S92_L001_R1_001.fastq.gz PositivK-2-oits_S92_L001_R2_001.fastq.gz mock-oomyc NIBIO_mpt_OITS_S96 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq PositivK-3-oits_S96_L001_R1_001.fastq.gz PositivK-3-oits_S96_L001_R2_001.fastq.gz mock-oomyc NIBIO_mpt_OITS_S100 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq PositivK-4-oits_S100_L001_R1_001.fastq.gz PositivK-4-oits_S100_L001_R2_001.fastq.gz -water NIBIO_mpt_OITS_S95 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq Vann1-oits_S95_L001_R1_001.fastq.gz Vann1-oits_S95_L001_R2_001.fastq.gz water NIBIO_mpt_OITS_S99 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq Vann2-oits_S99_L001_R1_001.fastq.gz Vann2-oits_S99_L001_R2_001.fastq.gz S-01 NIBIO_mpt_Trich_S138 Metabarcoding of Norwegian potato field soil: Trichodoridae 18S sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'Trich' PCR primers targeting the amplification of Trichodoridae 18S sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq 1-trich_S138_L001_R1_001.fastq.gz 1-trich_S138_L001_R2_001.fastq.gz S-10 NIBIO_mpt_Trich_S142 Metabarcoding of Norwegian potato field soil: Trichodoridae 18S sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'Trich' PCR primers targeting the amplification of Trichodoridae 18S sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq 10-trich_S142_L001_R1_001.fastq.gz 10-trich_S142_L001_R2_001.fastq.gz @@ -143,7 +140,6 @@ S-17 NIBIO_mpt_Trich_S140 Metabarcoding of Norwegian potato field soil: Trichodo S-18 NIBIO_mpt_Trich_S143 Metabarcoding of Norwegian potato field soil: Trichodoridae 18S sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'Trich' PCR primers targeting the amplification of Trichodoridae 18S sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq 18-trich_S143_L001_R1_001.fastq.gz 18-trich_S143_L001_R2_001.fastq.gz S-02 NIBIO_mpt_Trich_S141 Metabarcoding of Norwegian potato field soil: Trichodoridae 18S sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'Trich' PCR primers targeting the amplification of Trichodoridae 18S sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq 2-trich_S141_L001_R1_001.fastq.gz 2-trich_S141_L001_R2_001.fastq.gz S-03 NIBIO_mpt_Trich_S144 Metabarcoding of Norwegian potato field soil: Trichodoridae 18S sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'Trich' PCR primers targeting the amplification of Trichodoridae 18S sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq 3-trich_S144_L001_R1_001.fastq.gz 3-trich_S144_L001_R2_001.fastq.gz -S-04 NIBIO_mpt_Trich_S147 Metabarcoding of Norwegian potato field soil: Trichodoridae 18S sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'Trich' PCR primers targeting the amplification of Trichodoridae 18S sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq 4-trich_S147_L001_R1_001.fastq.gz 4-trich_S147_L001_R2_001.fastq.gz S-05 NIBIO_mpt_Trich_S150 Metabarcoding of Norwegian potato field soil: Trichodoridae 18S sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'Trich' PCR primers targeting the amplification of Trichodoridae 18S sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq 5-trich_S150_L001_R1_001.fastq.gz 5-trich_S150_L001_R2_001.fastq.gz S-06 NIBIO_mpt_Trich_S153 Metabarcoding of Norwegian potato field soil: Trichodoridae 18S sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'Trich' PCR primers targeting the amplification of Trichodoridae 18S sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq 6-trich_S153_L001_R1_001.fastq.gz 6-trich_S153_L001_R2_001.fastq.gz S-07 NIBIO_mpt_Trich_S156 Metabarcoding of Norwegian potato field soil: Trichodoridae 18S sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'Trich' PCR primers targeting the amplification of Trichodoridae 18S sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq 7-trich_S156_L001_R1_001.fastq.gz 7-trich_S156_L001_R2_001.fastq.gz -- GitLab