diff --git a/SRA submission/SRA_submission_edited.tsv b/SRA submission/SRA_submission_edited.tsv index 9e21e0bf88fbc231def50c6e8e03f0e977d8ef5b..e37bc71b48bd420a3f30f56937f7b1a83bbe63ff 100644 --- a/SRA submission/SRA_submission_edited.tsv +++ b/SRA submission/SRA_submission_edited.tsv @@ -71,8 +71,6 @@ S-07 NIBIO_mpt_FITS1_S23 Metabarcoding of Norwegian potato field soil: fungal IT S-08 NIBIO_mpt_FITS1_S26 Metabarcoding of Norwegian potato field soil: fungal ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'FITS1' PCR primers targeting the amplification of fungal ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq 8-its1_S26_L001_R1_001.fastq.gz 8-its1_S26_L001_R2_001.fastq.gz S-09 NIBIO_mpt_FITS1_S2 Metabarcoding of Norwegian potato field soil: fungal ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'FITS1' PCR primers targeting the amplification of fungal ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq 9-its1_S2_L001_R1_001.fastq.gz 9-its1_S2_L001_R2_001.fastq.gz NTC NIBIO_mpt_FITS1_S19 Metabarcoding of Norwegian potato field soil: fungal ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'FITS1' PCR primers targeting the amplification of fungal ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq NegativK-1-its1_S19_L001_R1_001.fastq.gz NegativK-1-its1_S19_L001_R2_001.fastq.gz -NTC NIBIO_mpt_FITS1_S22 Metabarcoding of Norwegian potato field soil: fungal ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'FITS1' PCR primers targeting the amplification of fungal ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq NegativK-2-its1_S22_L001_R1_001.fastq.gz NegativK-2-its1_S22_L001_R2_001.fastq.gz -NTC NIBIO_mpt_FITS1_S25 Metabarcoding of Norwegian potato field soil: fungal ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'FITS1' PCR primers targeting the amplification of fungal ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq NegativK-3-its1_S25_L001_R1_001.fastq.gz NegativK-3-its1_S25_L001_R2_001.fastq.gz NTC NIBIO_mpt_FITS1_S28 Metabarcoding of Norwegian potato field soil: fungal ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'FITS1' PCR primers targeting the amplification of fungal ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq NegativK-4-its1_S28_L001_R1_001.fastq.gz NegativK-4-its1_S28_L001_R2_001.fastq.gz mock-fungi NIBIO_mpt_FITS1_S4 Metabarcoding of Norwegian potato field soil: fungal ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'FITS1' PCR primers targeting the amplification of fungal ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq PositivK-1-its1_S4_L001_R1_001.fastq.gz PositivK-1-its1_S4_L001_R2_001.fastq.gz mock-fungi NIBIO_mpt_FITS1_S8 Metabarcoding of Norwegian potato field soil: fungal ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'FITS1' PCR primers targeting the amplification of fungal ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq PositivK-2-its1_S8_L001_R1_001.fastq.gz PositivK-2-its1_S8_L001_R2_001.fastq.gz @@ -100,8 +98,6 @@ S-08 NIBIO_mpt_FITS2_S54 Metabarcoding of Norwegian potato field soil: fungal IT S-09 NIBIO_mpt_FITS2_S30 Metabarcoding of Norwegian potato field soil: fungal ITS2 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'FITS2' PCR primers targeting the amplification of fungal ITS2 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq 9-its2_S30_L001_R1_001.fastq.gz 9-its2_S30_L001_R2_001.fastq.gz NTC NIBIO_mpt_FITS2_S47 Metabarcoding of Norwegian potato field soil: fungal ITS2 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'FITS2' PCR primers targeting the amplification of fungal ITS2 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq NegativK-1-its2_S47_L001_R1_001.fastq.gz NegativK-1-its2_S47_L001_R2_001.fastq.gz NTC NIBIO_mpt_FITS2_S50 Metabarcoding of Norwegian potato field soil: fungal ITS2 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'FITS2' PCR primers targeting the amplification of fungal ITS2 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq NegativK-2-its2_S50_L001_R1_001.fastq.gz NegativK-2-its2_S50_L001_R2_001.fastq.gz -NTC NIBIO_mpt_FITS2_S53 Metabarcoding of Norwegian potato field soil: fungal ITS2 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'FITS2' PCR primers targeting the amplification of fungal ITS2 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq NegativK-3-its2_S53_L001_R1_001.fastq.gz NegativK-3-its2_S53_L001_R2_001.fastq.gz -NTC NIBIO_mpt_FITS2_S56 Metabarcoding of Norwegian potato field soil: fungal ITS2 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'FITS2' PCR primers targeting the amplification of fungal ITS2 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq NegativK-4-its2_S56_L001_R1_001.fastq.gz NegativK-4-its2_S56_L001_R2_001.fastq.gz mock-fungi NIBIO_mpt_FITS2_S32 Metabarcoding of Norwegian potato field soil: fungal ITS2 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'FITS2' PCR primers targeting the amplification of fungal ITS2 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq PositivK-1-its2_S32_L001_R1_001.fastq.gz PositivK-1-its2_S32_L001_R2_001.fastq.gz mock-fungi NIBIO_mpt_FITS2_S36 Metabarcoding of Norwegian potato field soil: fungal ITS2 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'FITS2' PCR primers targeting the amplification of fungal ITS2 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq PositivK-2-its2_S36_L001_R1_001.fastq.gz PositivK-2-its2_S36_L001_R2_001.fastq.gz mock-fungi NIBIO_mpt_FITS2_S40 Metabarcoding of Norwegian potato field soil: fungal ITS2 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'FITS2' PCR primers targeting the amplification of fungal ITS2 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq PositivK-3-its2_S40_L001_R1_001.fastq.gz PositivK-3-its2_S40_L001_R2_001.fastq.gz @@ -127,7 +123,6 @@ S-07 NIBIO_mpt_OITS_S107 Metabarcoding of Norwegian potato field soil: oomycete S-08 NIBIO_mpt_OITS_S110 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq 8-oits_S110_L001_R1_001.fastq.gz 8-oits_S110_L001_R2_001.fastq.gz S-09 NIBIO_mpt_OITS_S86 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq 9-oits_S86_L001_R1_001.fastq.gz 9-oits_S86_L001_R2_001.fastq.gz NTC NIBIO_mpt_OITS_S103 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq NegativK-1-oits_S103_L001_R1_001.fastq.gz NegativK-1-oits_S103_L001_R2_001.fastq.gz -NTC NIBIO_mpt_OITS_S106 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq NegativK-2-oits_S106_L001_R1_001.fastq.gz NegativK-2-oits_S106_L001_R2_001.fastq.gz NTC NIBIO_mpt_OITS_S109 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq NegativK-3-oits_S109_L001_R1_001.fastq.gz NegativK-3-oits_S109_L001_R2_001.fastq.gz NTC NIBIO_mpt_OITS_S112 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq NegativK-4-oits_S112_L001_R1_001.fastq.gz NegativK-4-oits_S112_L001_R2_001.fastq.gz mock-oomyc NIBIO_mpt_OITS_S88 Metabarcoding of Norwegian potato field soil: oomycete ITS1 sequences AMPLICON METAGENOMIC PCR PAIRED ILLUMINA Illumina MiSeq Total DNA was extracted from 45 mL soil samples. Each soil sample and DNA from the appropriate mock control was amplified with 'OITS' PCR primers targeting the amplification of oomycete ITS1 sequences. Samples were indexed in the amplification PCR (1-step) and demultiplexed by the MiSeq. fastq PositivK-1-oits_S88_L001_R1_001.fastq.gz PositivK-1-oits_S88_L001_R2_001.fastq.gz