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diff --git a/SupMat2_DADA2_submission_FEMSEc.Rmd b/SupMat2_DADA2_submission_Frontiers.Rmd
similarity index 100%
rename from SupMat2_DADA2_submission_FEMSEc.Rmd
rename to SupMat2_DADA2_submission_Frontiers.Rmd
diff --git a/SupMat2_DADA2_submission_FEMSEc.pdf b/SupMat2_DADA2_submission_Frontiers.pdf
similarity index 100%
rename from SupMat2_DADA2_submission_FEMSEc.pdf
rename to SupMat2_DADA2_submission_Frontiers.pdf
diff --git a/SupMat3_Analysis_submission_FEMSEc.Rmd b/SupMat3_Analysis_submission_Frontiers.Rmd
similarity index 98%
rename from SupMat3_Analysis_submission_FEMSEc.Rmd
rename to SupMat3_Analysis_submission_Frontiers.Rmd
index deaa39a0cdc0cac4dc9f9888891f3f4c224b7aa3..759c5bb6b495297b236d031519059147bdab74ed 100644
--- a/SupMat3_Analysis_submission_FEMSEc.Rmd
+++ b/SupMat3_Analysis_submission_Frontiers.Rmd
@@ -299,10 +299,12 @@ pick_new_outgroup <- function(tree.unrooted){
 # Generic save function for plots that checks whether file exists and if so, 
 # creates a new one with d/m/y+time info to avoid overwriting.
 save_plot <- function(pl, filetype = ".tiff", plot_name = "my_plot"){
-name <- paste0("/",plot_name,filetype)
-if (file.exists(paste0(outp, name))) {
-name <- paste0("/", plot_name, "_", format(Sys.time(), "%d-%m-%y_%H%M%S"),filetype)}
-ggsave(paste0(outp, name), pl, width = wp, height = hp, unit = "cm", dpi = res)
+  name <- paste0("/",plot_name,filetype)
+  if (file.exists(paste0(outp, name))) {
+    name <- paste0("/", plot_name, "_", format(Sys.time(), 
+                                               "%d-%m-%y_%H%M%S"),filetype)}
+  ggsave(paste0(outp, name), pl, width = wp, height = hp, 
+         unit = "cm", dpi = 300)
 }
 
 ################################################
@@ -611,9 +613,9 @@ taxlvltre <- "OTU"
 taxlvlbar <- "OTU"
 
 ##CHANGE ME to change the width (in cm) of the output.
-wp <- 19
+wp <- 18
 #CHANGE ME to change the height (in cm) of the output.
-hp <- 22
+hp <- 20.8
 #CHANGE ME to change the resolution (in dpi) of the output.
 res <- 150
 
@@ -656,9 +658,9 @@ This chunk generate a phylogenetic tree of the positive control sequences and AS
 
 ```{r tree_seqs_contr, tidy=FALSE}
 ## CHANGE ME to change the width (in cm) of the output.
-wp <- 20
+wp <- 18
 # CHANGE ME to change the height (in cm) of the output.
-hp <- 15
+hp <- 13.5
 
 real_contr <- refseq(ps.contr)
 seqs <- readDNAStringSet(file = "Data_files/Pos_contrseqs.fasta", 
@@ -696,9 +698,9 @@ This chunk generates an overview over read counts for all samples and additional
 
 ```{r Averages, tidy=FALSE}
 ## CHANGE ME to change the width (in cm) of the output.
-wp = 20
+wp = 18
 # CHANGE ME to change the height (in cm) of the output.
-hp = 15  
+hp = 13.5  
 # CHANGE ME to change the resolution (in dpi) of the output.
 res = 150
 
@@ -764,9 +766,9 @@ taxlvl2 <- "Genus"
 customLabels <- TRUE
 
 ## CHANGE ME to change the width (in cm) of the output.
-wp <- 20
+wp <- 18
 # CHANGE ME to change the height (in cm) of the output.
-hp <- 15  
+hp <- 15 
 # CHANGE ME to change the resolution (in dpi) of the output.
 res <- 150
 
@@ -864,7 +866,7 @@ colors_combo["Pythiogeton"] <- viridis_blues[2]
 colors_combo["Saprolegnia"] <- viridis_blues[4]
 
 #Format legend labels
-if(customLabels){
+if (customLabels) {
   labelling_lvl2 <- c(expression(paste(italic("Spumella"), "-like")), 
   "uncultured fungus", expression(italic("Aphanomyces"), 
   italic("Globisporangium"), italic("Haptoglossa"), italic("Pedospumella"),
@@ -881,7 +883,7 @@ names(enrich_labs) <- c("Before enrichment", "Enriched")
 theme_bar <- theme(legend.position = "bottom", 
                    legend.key.size = unit(0.4, "cm"), 
                    legend.spacing.x = unit(0.3, 'cm'), 
-                   text = element_text(size = 10), 
+                   text = element_text(size = 9), 
                    strip.text.x = element_text(size = 10),
                    strip.background = element_blank(),
                    axis.text.x = element_text(angle = 0, hjust = 0.5),
@@ -935,8 +937,8 @@ cat("Chunk successfully run")
 This chunk imports the FUNGuild database based on code by [S. Faye Smith (2018)](https://rpubs.com/faysmith/metabarcoding), then classifies and plots all oomycete genera in the data set (Fig. 2).
 ```{r funguild_classification, tidy=FALSE}
 # Plot save dimensions
-wp <- 20
-hp <- 15
+wp <- 18
+hp <- 13.5
 res <- 150
 
 # Adds formatted legend labels for the specific output in the manuscript. 
@@ -965,13 +967,15 @@ shared_theme <- theme(legend.key.size = unit(3, "mm"),
                       legend.position = "none", 
                       axis.title.x = element_blank(), 
                       plot.margin = margin(20,10,10,10), 
-                      legend.text.align = 0)
+                      legend.text.align = 0,
+                      text = element_text(size = 10))
 
 shared_theme_abu <- theme(legend.key.size = unit(3, "mm"), 
                           legend.position = "none", 
                           axis.title.x = element_blank(),  
                           plot.margin = margin(20,10,10,10),
-                          legend.text.align = 0)
+                          legend.text.align = 0,
+                          text = element_text(size = 10))
 
 #Format legend labels
 if(customLabels){
@@ -1027,7 +1031,7 @@ guilds <- ggarrange(guild_g, guild_g_abu, guild_s,
                     guild_s_abu, nrow = 2, ncol = 2, 
                     common.legend = TRUE, legend = "right" ,align = "hv", 
                     labels = c("Genus level", "", "Species level", ""), 
-                    font.label = list(size = 14))
+                    font.label = list(size = 12))
 guilds
 save_plot(guilds ,plot_name = "FunGuild_combo_Fig2")
 
@@ -1279,8 +1283,8 @@ cat iso_and_ASVs_v3.fasta BLAST_ref_trim.fa > iso_ASVs_refs_v3.fasta
 ```
 
 ```{r tree_seqs_Iso, tidy=FALSE}
-wp <- 20
-hp <- 15
+wp <- 18
+hp <- 13.5
 
 seqs <- readDNAStringSet(file = file.path(path,"iso_ASVs_refs_v3.fasta"), 
                          format = "fasta")
diff --git a/SupMat3_Analysis_submission_FEMSEc.html b/SupMat3_Analysis_submission_Frontiers.html
similarity index 100%
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rename to SupMat3_Analysis_submission_Frontiers.html
diff --git a/SupMat3_Analysis_submission_FEMSEc.pdf b/SupMat3_Analysis_submission_Frontiers.pdf
similarity index 100%
rename from SupMat3_Analysis_submission_FEMSEc.pdf
rename to SupMat3_Analysis_submission_Frontiers.pdf