diff --git a/Cafe_Aug21/complete_plot.pdf b/Cafe_Aug21/complete_plot.pdf index 0fa423d98f12958d071fa40b7ce78555bb3d78f9..02e42d9c5b6fd970f934ddbb4ed8956ef5d6363a 100644 Binary files a/Cafe_Aug21/complete_plot.pdf and b/Cafe_Aug21/complete_plot.pdf differ diff --git a/Cafe_Aug21/selected_plot.pdf b/Cafe_Aug21/selected_plot.pdf index 44017bb0623491754e3112bb94f47b44d616a3d5..6233c1fd90602934949cc878c2816d39fad4c710 100644 Binary files a/Cafe_Aug21/selected_plot.pdf and b/Cafe_Aug21/selected_plot.pdf differ diff --git a/cafe5-GOstats_parser.Rmd b/cafe5-GOstats_parser.Rmd index d6bf137965442a71bbf39dfa2ca804b79c1665e0..b54237354af5e739cff701501e38c6d8fc71a917 100644 --- a/cafe5-GOstats_parser.Rmd +++ b/cafe5-GOstats_parser.Rmd @@ -283,12 +283,13 @@ clean_test_results <- bind_rows(all_tests_all_ontologies) %>% Ontology = str_replace(Ontology, "GOMFID", "Molecular function"),) %>% unite(col = "GOTerm", contains("GO"), Term, sep = " ") %>% add_count(GOTerm, name = "Significant_in") %>% - mutate(Genome = factor(Genome, levels = c("MrilRCEF48713", "MacrCQMa1023", + mutate(Genome = factor(Genome, levels = c("MrilRCEF48713", "MacrCQMa1023", + "MalbARSEF1941", "MmajARSEF2973", "MguiARSEF9773", + "MbruARSEF32973", "ManiARSEF5493", "ManiBRIP53293", "ManiE63", "MrobARSEF233", - "MhumbESALQ1638", "MalbARSEF1941", - "MbruARSEF32973"))) + "MhumbESALQ1638"))) write_tsv(clean_test_results, file.path(cafe_directory, "overrepresented_GO.tsv")) ``` diff --git a/cafe5-GOstats_parser.pdf b/cafe5-GOstats_parser.pdf index 7351ff1f34d878e37a4aaa7f4e64a65dbe8662f9..25866f5df223973f7aac15f6b9c7eb9ce100fbbd 100644 Binary files a/cafe5-GOstats_parser.pdf and b/cafe5-GOstats_parser.pdf differ