From ef4dffed81b69274e065e73025f25e3fd09ad10f Mon Sep 17 00:00:00 2001 From: Simeon <51403284+simeross@users.noreply.github.com> Date: Fri, 27 Oct 2023 13:17:52 +0200 Subject: [PATCH] import readDNAStringSet --- NAMESPACE | 1 + R/cluster_longest_reading_frames.R | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/NAMESPACE b/NAMESPACE index 664c393..21a15d6 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -57,6 +57,7 @@ import(tidyr) importFrom(Biostrings,AAStringSet) importFrom(Biostrings,DNAStringSet) importFrom(Biostrings,DNAStringSetList) +importFrom(Biostrings,readDNAStringSet) importFrom(Biostrings,translate) importFrom(Biostrings,writeXStringSet) importFrom(DECIPHER,AlignSeqs) diff --git a/R/cluster_longest_reading_frames.R b/R/cluster_longest_reading_frames.R index 0728631..47bef09 100644 --- a/R/cluster_longest_reading_frames.R +++ b/R/cluster_longest_reading_frames.R @@ -13,7 +13,7 @@ #' cluster_longest_reading_frames(clustered_sequences=clustered_sequences, reading_frame_tbl=reading_frame_tbl) #' #' @import dplyr purrr tibble tidyr -#' @importFrom Biostrings DNAStringSetList +#' @importFrom Biostrings DNAStringSetList readDNAStringSet #' cluster_longest_reading_frames <- function( clustered_sequences = DNAStringSetList, # A variable that holds a list of DNA sequences that have been clustered -- GitLab