diff --git a/NAMESPACE b/NAMESPACE index 664c393761d191cdbc0bd5ef6b978857f87b1871..21a15d6add6b761beeb1177a7086d029e11c8c25 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -57,6 +57,7 @@ import(tidyr) importFrom(Biostrings,AAStringSet) importFrom(Biostrings,DNAStringSet) importFrom(Biostrings,DNAStringSetList) +importFrom(Biostrings,readDNAStringSet) importFrom(Biostrings,translate) importFrom(Biostrings,writeXStringSet) importFrom(DECIPHER,AlignSeqs) diff --git a/R/cluster_longest_reading_frames.R b/R/cluster_longest_reading_frames.R index 0728631d4f6518c6dd4e4276067be3df060a9f5c..47bef0946002733a9e007f7c75afdaf952dbe3b9 100644 --- a/R/cluster_longest_reading_frames.R +++ b/R/cluster_longest_reading_frames.R @@ -13,7 +13,7 @@ #' cluster_longest_reading_frames(clustered_sequences=clustered_sequences, reading_frame_tbl=reading_frame_tbl) #' #' @import dplyr purrr tibble tidyr -#' @importFrom Biostrings DNAStringSetList +#' @importFrom Biostrings DNAStringSetList readDNAStringSet #' cluster_longest_reading_frames <- function( clustered_sequences = DNAStringSetList, # A variable that holds a list of DNA sequences that have been clustered