From fa0fff847e360b473a0ba36eababc79a569802db Mon Sep 17 00:00:00 2001
From: Maciej Wielgosz <maciej.wielgosz@nibio.no>
Date: Tue, 1 Nov 2022 15:23:46 +0100
Subject: [PATCH] instance seg. metrics progress, chemfer
---
config/__init__.py | 0
config/config.yaml | 3 +
get_hard_data_for_playground.sh | 14 +
get_simple_data_for_playground.sh | 6 +
get_small_data_for_playground.sh | 13 +
get_strange_data_for_playground.sh | 14 +
metrics/find_matches_using_chamfer.py | 53 +-
metrics/instance_segmentation_metrics.py | 98 +-
.../get_instances_side_by_side.py | 35 +-
run_all_fine_grained.sh | 2 +-
run_chamfer.sh | 3 +
run_metrics.sh | 23 +
sample_playground_strange_results/allout.txt | 53103 ++++++++++++++++
13 files changed, 53328 insertions(+), 39 deletions(-)
create mode 100644 config/__init__.py
create mode 100644 config/config.yaml
create mode 100755 get_hard_data_for_playground.sh
create mode 100755 get_simple_data_for_playground.sh
create mode 100755 get_small_data_for_playground.sh
create mode 100755 get_strange_data_for_playground.sh
create mode 100644 run_chamfer.sh
create mode 100755 run_metrics.sh
create mode 100644 sample_playground_strange_results/allout.txt
diff --git a/config/__init__.py b/config/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/config/config.yaml b/config/config.yaml
new file mode 100644
index 0000000..3175bce
--- /dev/null
+++ b/config/config.yaml
@@ -0,0 +1,3 @@
+files_formats:
+ label_for_instances_in_gt: 'treeID'
+ label_for_instances_in_predicted:
diff --git a/get_hard_data_for_playground.sh b/get_hard_data_for_playground.sh
new file mode 100755
index 0000000..3618f13
--- /dev/null
+++ b/get_hard_data_for_playground.sh
@@ -0,0 +1,14 @@
+# remove all the files in the source folder
+SOURCE_FOLDER=/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground
+rm -rf $SOURCE_FOLDER/*
+
+cp /home/nibio/mutable-outside-world/data/raw_for_pipeline_test/Plot69_2022-06-15_09-08-53_9pct_time.las \
+/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground
+
+# change name of the file to first.laz
+mv /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/Plot69_2022-06-15_09-08-53_9pct_time.las \
+/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/first.las
+
+# copy first.laz to second.laz
+cp /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/first.las \
+/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/second.las
\ No newline at end of file
diff --git a/get_simple_data_for_playground.sh b/get_simple_data_for_playground.sh
new file mode 100755
index 0000000..590b6a4
--- /dev/null
+++ b/get_simple_data_for_playground.sh
@@ -0,0 +1,6 @@
+# remove all the files in the source folder
+SOURCE_FOLDER=/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground
+rm -rf $SOURCE_FOLDER/*
+
+cp /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/playground_data/* \
+/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground
\ No newline at end of file
diff --git a/get_small_data_for_playground.sh b/get_small_data_for_playground.sh
new file mode 100755
index 0000000..5c36fb1
--- /dev/null
+++ b/get_small_data_for_playground.sh
@@ -0,0 +1,13 @@
+SOURCE_FOLDER=/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground
+rm -rf $SOURCE_FOLDER/*
+
+cp /home/nibio/mutable-outside-world/data/small_file_pipeline_test/small_file_pipeline_test.las \
+/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground
+
+# change name of the file to first.laz
+mv /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/small_file_pipeline_test.las \
+/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/first.las
+
+# copy first.laz to second.laz
+# cp /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/first.las \
+# /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/second.las
\ No newline at end of file
diff --git a/get_strange_data_for_playground.sh b/get_strange_data_for_playground.sh
new file mode 100755
index 0000000..8a2825d
--- /dev/null
+++ b/get_strange_data_for_playground.sh
@@ -0,0 +1,14 @@
+# remove all the files in the source folder
+SOURCE_FOLDER=/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground
+rm -rf $SOURCE_FOLDER/*
+
+cp /home/nibio/mutable-outside-world/data/strange_shape_cloud_for_pipeline_test/2022-08-05_11-03-31_9pct_time_scan.laz \
+/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground
+
+# change name of the file to first.laz
+mv /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/2022-08-05_11-03-31_9pct_time_scan.laz \
+/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/first.laz
+
+# # copy first.laz to second.laz
+cp /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/first.laz \
+/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/second.laz
\ No newline at end of file
diff --git a/metrics/find_matches_using_chamfer.py b/metrics/find_matches_using_chamfer.py
index 9032d1b..2531727 100644
--- a/metrics/find_matches_using_chamfer.py
+++ b/metrics/find_matches_using_chamfer.py
@@ -1,11 +1,13 @@
import pdal
import json
import os
+import argparse
class FindMatchesUsingChamfer:
def __init__(self, gt_folder, pred_folder, verbose=False):
self.gt_folder = gt_folder
self.pred_folder = pred_folder
+ self.verbose = verbose
def compare_gt_pred(self, las_gt, las_pred):
# run pdal chamfer
@@ -16,9 +18,54 @@ class FindMatchesUsingChamfer:
output = json.loads(output)
return output['chamfer']
+ def run_in_folders(self):
+ # get all las files in gt and pred folder
+ gt_files = [os.path.join(self.gt_folder, file) for file in os.listdir(self.gt_folder) if file.endswith(".las")]
+ pred_files = [os.path.join(self.pred_folder, file) for file in os.listdir(self.pred_folder) if file.endswith(".las")]
+
+ # compare all gt and pred files
+ # define a dictionary to store the results
+ results = {}
+ for gt_file in gt_files:
+ for pred_file in pred_files:
+ print(gt_file, pred_file)
+ print(self.compare_gt_pred(gt_file, pred_file))
+ results[(gt_file, pred_file)] = self.compare_gt_pred(gt_file, pred_file)
+
+ # sort the results in ascending order
+ results = {k: v for k, v in sorted(results.items(), key=lambda item: item[1])}
+
+ # print the first 10 results
+ for i, result in enumerate(results):
+ if i < 10:
+ print(result, results[result])
+ else:
+ break
+
+ # save dictionary as csv using pandas
+ import pandas as pd
+ df = pd.DataFrame.from_dict(results, orient='index')
+ df.to_csv('results_chamfer.csv')
+
if __name__ == '__main__':
- gt_file = '/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/results/input_data/output/0.las'
- pred_file = '/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/results/instance_segmented_point_clouds_with_ground/output/0.las'
- FindMatchesUsingChamfer('', '').compare_gt_pred(gt_file, pred_file)
+ # use argparse to parse the arguments
+ parser = argparse.ArgumentParser()
+ parser.add_argument('--gt_folder', type=str, required=True, help='Path to the ground truth folder.')
+ parser.add_argument('--pred_folder', type=str, required=True, help='Path to the predicted folder.')
+ parser.add_argument('--verbose', type=bool, default=False, help='Print the output of pdal chamfer.')
+ args = parser.parse_args()
+
+ # run the class
+ find_matches = FindMatchesUsingChamfer(args.gt_folder, args.pred_folder, args.verbose)
+ find_matches.run_in_folders()
+
+
+
+
+
+
+ # gt_file = '/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/results/input_data/output/0.las'
+ # pred_file = '/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/results/instance_segmented_point_clouds_with_ground/output/0.las'
+ # FindMatchesUsingChamfer('', '').compare_gt_pred(gt_file, pred_file)
diff --git a/metrics/instance_segmentation_metrics.py b/metrics/instance_segmentation_metrics.py
index 80a76cf..68d3509 100644
--- a/metrics/instance_segmentation_metrics.py
+++ b/metrics/instance_segmentation_metrics.py
@@ -2,6 +2,7 @@
import glob
import argparse
import os
+import joblib
import laspy
import logging
@@ -22,8 +23,6 @@ class InstanceSegmentationMetrics():
# get different classes from gt and pred
gt_classes = np.unique(las_gt.treeID)
- # remove 0 from gt_classes as it is the background class
- gt_classes = gt_classes[gt_classes != 0]
pred_classes = np.unique(las_pred.instance_nr)
# put x, y, z, for different classes in a dictionary
@@ -61,30 +60,24 @@ class InstanceSegmentationMetrics():
sorted_overlap = sorted(overlap.items(), key=lambda x: x[1], reverse=True)
sorted_overlap_points = sorted(overlap_points.items(), key=lambda x: x[1], reverse=True)
- # # print the number of classes in gt and pred
- # logging.info('Number of classes in gt: {}'.format(len(gt_classes)))
- # logging.info('Number of classes in pred: {}'.format(len(pred_classes)))
+
+ # # find overlap between gt 0 and 0 pred classes using subsampling and voxel size 0.5
+ # logging.info('Overlap between gt 0 and pred 0 using subsampling and voxel size 0.5: {}'.format(self.get_overlap(gt_dict[0], pred_dict[0], subsample=True, voxel_size=0.5)))
- # # print the number of points in gt and pred
- # logging.info('Number of points in gt: {}'.format(sum(gt_dict_points.values())))
- # logging.info('Number of points in pred: {}'.format(sum(pred_dict_points.values())))
+ # # find overlap between gt 0 and 0 pred classes using subsampling and voxel size 0.05
+ # logging.info('Overlap between gt 0 and pred 0 using subsampling and voxel size 0.05: {}'.format(self.get_overlap(gt_dict[0], pred_dict[0], subsample=True, voxel_size=0.05)))
- # # print the number of points in gt and pred per class
- # logging.info('Number of points in gt per class: {}'.format(gt_dict_points))
- # logging.info('Number of points in pred per class: {}'.format(pred_dict_points))
+ # # find overlap between gt 0 and 0 pred classes without subsampling
+ # logging.info('Overlap between gt 0 and pred 0 without subsampling: {}'.format(self.get_overlap(gt_dict[0], pred_dict[0], subsample=False)))
- # # print the number of overlapping points per class
- # logging.info('Number of overlapping points per class: {}'.format(overlap_points))
-
- # # print sorted overlap
- # logging.info('Sorted overlap: {}'.format(sorted_overlap))
-
- # find overlap between gt 39 and pred 6
- logging.info('Overlap between gt 39 and pred 6: {}'.format(overlap[(39, 6)]))
-
- # find overlap between gt 39 and pred 2
- logging.info('Overlap between gt 39 and pred 2: {}'.format(overlap[(39, 2)]))
+ # find overlap between gt 0 and and other pred classes using subsampling and voxel size 0.5
+ for i in range(1, len(pred_dict)):
+ logging.info('Overlap between gt 0 and pred {} using subsampling and voxel size 0.5: {}'.format(i, self.get_overlap(gt_dict[0], pred_dict[i], subsample=True, voxel_size=0.5)))
+ # find overlap between gt 9 and and other pred classes using subsampling and voxel size 0.5
+ for i in range(1, len(pred_dict)):
+ logging.info('Overlap between gt 9 and pred {} using subsampling and voxel size 0.5: {}'.format(i, self.get_overlap(gt_dict[9], pred_dict[i], subsample=True, voxel_size=0.1)))
+
# print sorted overlap for first 10 classes
# logging.info('Sorted overlap for classes: {}'.format(sorted_overlap))
@@ -92,16 +85,51 @@ class InstanceSegmentationMetrics():
# # print best match for classes along with overlap
# logging.info('Best match for classes: {}'.format(best_match))
+ def get_overlap(self, gt, pred, subsample=False, voxel_size=0.1):
+ # compute overlap between gt and pred
+ # if subsample is True, subsample the point cloud
+ if subsample:
+ gt = self.subsample(gt, voxel_size)
+ pred = self.subsample(pred, voxel_size)
-
-
- def get_overlap(self, gt, pred):
- # compute overlap between gt and pred
+ # get the number of points in gt and pred
overlap = np.intersect1d(gt, pred).shape[0]
+ # overlap = np.intersect1d(gt, pred).shape[0]
+
# overlap = np.sum(np.all(gt[:, None] == pred, axis=-1), axis=0)
return overlap
+ def subsample(self, tensor_x_y_z, voxel_size=0.1):
+ logging.info('Subsampling...')
+ non_empty_voxel_keys, inverse, nb_pts_per_voxel = \
+ np.unique(((tensor_x_y_z - np.min(tensor_x_y_z, axis=0)) // voxel_size).astype(int), axis=0, return_inverse=True, return_counts=True)
+ idx_pts_vox_sorted=np.argsort(inverse)
+ voxel_grid={}
+ grid_barycenter,grid_candidate_center=[],[]
+
+ def grid_subsampling(non_empty_voxel_keys):
+ last_seen=0
+ for idx,vox in enumerate(non_empty_voxel_keys):
+ voxel_grid[tuple(vox)]=tensor_x_y_z[idx_pts_vox_sorted[last_seen:last_seen+nb_pts_per_voxel[idx]]]
+ grid_barycenter.append(np.mean(voxel_grid[tuple(vox)],axis=0))
+ grid_candidate_center.append(voxel_grid[tuple(vox)][np.linalg.norm(voxel_grid[tuple(vox)]-np.mean(voxel_grid[tuple(vox)],axis=0),axis=1).argmin()])
+ last_seen+=nb_pts_per_voxel[idx]
+
+ return grid_candidate_center
+
+ # use joblib to parallelize the computation of the for loop
+ grid_candidate_center = joblib.Parallel(n_jobs=12)(joblib.delayed(grid_subsampling)(non_empty_voxel_keys) for i in range(12))
+
+ # merge the results
+ grid_candidate_center = np.concatenate(grid_candidate_center, axis=0)
+
+ grid_candidate_center = np.array(grid_candidate_center)
+ new_points = grid_candidate_center.transpose()
+
+ return new_points
+
+
def get_metrics_for_all_point_clouds(self):
# get all las files in gt and pred folders using glob
las_gt = glob.glob(os.path.join(self.gt_folder, '*.las'))
@@ -116,11 +144,17 @@ class InstanceSegmentationMetrics():
self.get_metrics_for_single_point_cloud(las_gt[i], las_pred[i])
if __name__ == '__main__':
- parser = argparse.ArgumentParser()
- parser.add_argument('--gt_folder', type=str, required=True, help='Path to the folder containing ground truth point clouds.')
- parser.add_argument('--pred_folder', type=str, required=True, help='Path to the folder containing predicted point clouds.')
- args = parser.parse_args()
+ # parser = argparse.ArgumentParser()
+ # parser.add_argument('--gt_folder', type=str, required=True, help='Path to the folder containing ground truth point clouds.')
+ # parser.add_argument('--pred_folder', type=str, required=True, help='Path to the folder containing predicted point clouds.')
+ # args = parser.parse_args()
+
+ # # create an instance of InstanceSegmentationMetrics class
+ # instance_segmentation_metrics = InstanceSegmentationMetrics(args.gt_folder, args.pred_folder)
+
+ input_file_path = '/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/results/input_data'
+ instance_segmented_file_path = '/home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/results/instance_segmented_point_clouds_with_ground'
+
+ instance_segmentation_metrics = InstanceSegmentationMetrics(input_file_path, instance_segmented_file_path)
- # create an instance of InstanceSegmentationMetrics class
- instance_segmentation_metrics = InstanceSegmentationMetrics(args.gt_folder, args.pred_folder)
instance_segmentation_metrics.get_metrics_for_all_point_clouds()
diff --git a/nibio_postprocessing/get_instances_side_by_side.py b/nibio_postprocessing/get_instances_side_by_side.py
index 2c10993..6d00d36 100644
--- a/nibio_postprocessing/get_instances_side_by_side.py
+++ b/nibio_postprocessing/get_instances_side_by_side.py
@@ -5,6 +5,8 @@ import os
from unicodedata import name
import laspy
import numpy as np
+import pandas as pd
+import pickle
class GetInstancesSideBySide():
@@ -41,8 +43,20 @@ class GetInstancesSideBySide():
# process each file
# create a new csv file using pandas
- import pandas as pd
- df = pd.DataFrame(columns=['file_name', 'instance_label', 'min_x', 'max_x', 'min_y', 'max_y', 'min_z', 'max_z', 'number_of_points'])
+ df = pd.DataFrame(columns=[
+ 'file_name',
+ 'instance_label',
+ 'min_x',
+ 'max_x',
+ 'min_y',
+ 'max_y',
+ 'min_z',
+ 'max_z',
+ 'number_of_points'
+ ])
+
+ # create a dictionary to store the points for each instance
+ low_ground_points_dict = {}
for file in files:
@@ -66,6 +80,14 @@ class GetInstancesSideBySide():
max_y = np.max(points[:, 1])
max_z = np.max(points[:, 2])
+ # define the new coordinates of a size of the old one
+ points_low_ground = np.zeros_like(points)
+ # get points to z dimension of 0.5 meter
+ points_low_ground[:, 2] = points[:, 2] - min_z
+ # get only the points which are lower than 0.1 meter
+ points_low_ground = points_low_ground[points_low_ground[:, 2] < 0.3]
+ # save the points to the
+
# add parameters to the dataframe
df = df.append(
{
@@ -80,7 +102,9 @@ class GetInstancesSideBySide():
'number_of_points': len(points)
}, ignore_index=True)
-
+ # add the points to the dictionary
+ low_ground_points_dict[str(instance_label)] = points_low_ground
+
# zero the coordinates
points[:, 0] = points[:, 0] - min_x
points[:, 1] = points[:, 1] - min_y
@@ -100,6 +124,11 @@ class GetInstancesSideBySide():
las.write(os.path.join(self.output_folder, str(instance_label) + '.las'))
# write csv file
df.to_csv(self.stats_file, index=False)
+
+ # save dictionary to pickle file
+ with open(os.path.join(self.output_folder, 'low_ground_points_dict.pickle'), 'wb') as handle:
+ pickle.dump(low_ground_points_dict, handle, protocol=pickle.HIGHEST_PROTOCOL)
+
if self.verbose:
# print the number of instances which were saved and done
print("Saved {} instances".format(len(instance_points)))
diff --git a/run_all_fine_grained.sh b/run_all_fine_grained.sh
index 60be9c1..446ab41 100755
--- a/run_all_fine_grained.sh
+++ b/run_all_fine_grained.sh
@@ -3,7 +3,7 @@
############################ parameters #################################################
# General parameters
CLEAR_INPUT_FOLDER=1 # 1: clear input folder, 0: not clear input folder
-CONDA_ENV="pdal-env" # conda environment for running the pipeline
+CONDA_ENV="pdal-env-1" # conda environment for running the pipeline
# Tiling parameters
N_TILES=3
diff --git a/run_chamfer.sh b/run_chamfer.sh
new file mode 100644
index 0000000..27ae312
--- /dev/null
+++ b/run_chamfer.sh
@@ -0,0 +1,3 @@
+#!/bin/bash
+pdal chamfer sample_playground/results/input_data/output/0.las sample_playground/results/instance_segmented_point_clouds_with_ground/output/3.las
+
diff --git a/run_metrics.sh b/run_metrics.sh
new file mode 100755
index 0000000..205191e
--- /dev/null
+++ b/run_metrics.sh
@@ -0,0 +1,23 @@
+#!/bin/bash
+
+python nibio_postprocessing/get_instances_side_by_side.py \
+--input_folder /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/results/instance_segmented_point_clouds/ \
+--output_folder /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/results/instance_segmented_point_clouds/output \
+--instance_label 'instance_nr' \
+--verbose \
+# --merge
+
+python nibio_postprocessing/get_instances_side_by_side.py \
+--input_folder /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/results/instance_segmented_point_clouds_with_ground/ \
+--output_folder /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/results/instance_segmented_point_clouds_with_ground/output \
+--instance_label 'instance_nr' \
+--verbose \
+# --merge
+
+python nibio_postprocessing/get_instances_side_by_side.py \
+--input_folder /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/results/input_data/ \
+--output_folder /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/results/input_data/output \
+--instance_label 'treeID' \
+--verbose \
+# --merge
+
diff --git a/sample_playground_strange_results/allout.txt b/sample_playground_strange_results/allout.txt
new file mode 100644
index 0000000..b8561ef
--- /dev/null
+++ b/sample_playground_strange_results/allout.txt
@@ -0,0 +1,53103 @@
+PYTHONPATH is not set. Setting it to the current directory
+Clearing input folder
+Removed all the files and folders except the ply and las files in the input folder
+2 las files found in the input folder good to go with!
+INFO:root:Converting files in place.
+INFO:root:Found 2 files.
+INFO:root:Found 2 files that can be converted.
+Searching for files in the input folder...
+
0%| | 0/2 [00:00<?, ?it/s]INFO:root:Converted sample_playground/first.laz to sample_playground/first.las
+
50%|█████ | 1/2 [00:25<00:25, 25.83s/it]INFO:root:Converted sample_playground/second.laz to sample_playground/second.las
+
100%|██████████| 2/2 [00:51<00:00, 25.80s/it]
100%|██████████| 2/2 [00:51<00:00, 25.81s/it]
+INFO:root:Converted 2 files.
+
0%| | 0/2 [00:00<?, ?it/s]
100%|██████████| 2/2 [00:00<00:00, 58.37it/s]
+INFO:root:Deleted 2 files.
+INFO:root:Found 2 files.
+INFO:root:Found 2 files that can be converted.
+Searching for files in the input folder...
+
0%| | 0/2 [00:00<?, ?it/s]INFO:root:Converted sample_playground/first.las to sample_playground/first.ply
+
50%|█████ | 1/2 [02:09<02:09, 129.85s/it]INFO:root:Converted sample_playground/second.las to sample_playground/second.ply
+
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100%|██████████| 2/2 [04:18<00:00, 129.19s/it]
+INFO:root:Converted 2 files.
+Clearing input folder
+Removed all the files and folders except the ply and las files in the input folder
+mv: 'sample_playground/segmented_point_clouds/first.ply' and 'sample_playground/segmented_point_clouds/first.ply' are the same file
+mv: 'sample_playground/segmented_point_clouds/second.ply' and 'sample_playground/segmented_point_clouds/second.ply' are the same file
+Tiling and tile index generation
+
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100%|██████████| 382/382 [00:34<00:00, 11.09it/s]
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+
100%|██████████| 2/2 [05:27<00:00, 163.61s/it]
100%|██████████| 2/2 [05:27<00:00, 163.59s/it]
+Removing small tiles from sample_playground/segmented_point_clouds/tiled/first
+Found 382 tiles
+Computed density of all tiles
+Removing sample_playground/segmented_point_clouds/tiled/first/001.ply which has only 24667 points
+Removing sample_playground/segmented_point_clouds/tiled/first/004.ply which has only 3003 points
+Removing sample_playground/segmented_point_clouds/tiled/first/005.ply which has only 2292 points
+Removing sample_playground/segmented_point_clouds/tiled/first/006.ply which has only 923 points
+Removing sample_playground/segmented_point_clouds/tiled/first/007.ply which has only 358 points
+Removing sample_playground/segmented_point_clouds/tiled/first/008.ply which has only 29175 points
+Removing sample_playground/segmented_point_clouds/tiled/first/009.ply which has only 176511 points
+Removing sample_playground/segmented_point_clouds/tiled/first/010.ply which has only 1691 points
+Removing sample_playground/segmented_point_clouds/tiled/first/011.ply which has only 4997 points
+Removing sample_playground/segmented_point_clouds/tiled/first/012.ply which has only 28855 points
+Removing sample_playground/segmented_point_clouds/tiled/first/014.ply which has only 125598 points
+Removing sample_playground/segmented_point_clouds/tiled/first/016.ply which has only 18903 points
+Removing sample_playground/segmented_point_clouds/tiled/first/017.ply which has only 4451 points
+Removing sample_playground/segmented_point_clouds/tiled/first/018.ply which has only 22505 points
+Removing sample_playground/segmented_point_clouds/tiled/first/019.ply which has only 91933 points
+Removing sample_playground/segmented_point_clouds/tiled/first/020.ply which has only 9232 points
+Removing sample_playground/segmented_point_clouds/tiled/first/021.ply which has only 2549 points
+Removing sample_playground/segmented_point_clouds/tiled/first/022.ply which has only 1362 points
+Removing sample_playground/segmented_point_clouds/tiled/first/025.ply which has only 155085 points
+Removing sample_playground/segmented_point_clouds/tiled/first/027.ply which has only 21874 points
+Removing sample_playground/segmented_point_clouds/tiled/first/030.ply which has only 19546 points
+Removing sample_playground/segmented_point_clouds/tiled/first/031.ply which has only 267 points
+Removing sample_playground/segmented_point_clouds/tiled/first/032.ply which has only 1143 points
+Removing sample_playground/segmented_point_clouds/tiled/first/033.ply which has only 7153 points
+Removing sample_playground/segmented_point_clouds/tiled/first/034.ply which has only 428 points
+Removing sample_playground/segmented_point_clouds/tiled/first/038.ply which has only 438 points
+Removing sample_playground/segmented_point_clouds/tiled/first/039.ply which has only 55693 points
+Removing sample_playground/segmented_point_clouds/tiled/first/048.ply which has only 100021 points
+Removing sample_playground/segmented_point_clouds/tiled/first/049.ply which has only 3934 points
+Removing sample_playground/segmented_point_clouds/tiled/first/050.ply which has only 161309 points
+Removing sample_playground/segmented_point_clouds/tiled/first/051.ply which has only 303 points
+Removing sample_playground/segmented_point_clouds/tiled/first/052.ply which has only 3171 points
+Removing sample_playground/segmented_point_clouds/tiled/first/053.ply which has only 618 points
+Removing sample_playground/segmented_point_clouds/tiled/first/054.ply which has only 8261 points
+Removing sample_playground/segmented_point_clouds/tiled/first/055.ply which has only 16224 points
+Removing sample_playground/segmented_point_clouds/tiled/first/056.ply which has only 73 points
+Removing sample_playground/segmented_point_clouds/tiled/first/057.ply which has only 67 points
+Removing sample_playground/segmented_point_clouds/tiled/first/058.ply which has only 7517 points
+Removing sample_playground/segmented_point_clouds/tiled/first/059.ply which has only 107 points
+Removing sample_playground/segmented_point_clouds/tiled/first/060.ply which has only 1840 points
+Removing sample_playground/segmented_point_clouds/tiled/first/061.ply which has only 111 points
+Removing sample_playground/segmented_point_clouds/tiled/first/064.ply which has only 6218 points
+Removing sample_playground/segmented_point_clouds/tiled/first/065.ply which has only 831 points
+Removing sample_playground/segmented_point_clouds/tiled/first/066.ply which has only 1383 points
+Removing sample_playground/segmented_point_clouds/tiled/first/067.ply which has only 59 points
+Removing sample_playground/segmented_point_clouds/tiled/first/068.ply which has only 27 points
+Removing sample_playground/segmented_point_clouds/tiled/first/069.ply which has only 809 points
+Removing sample_playground/segmented_point_clouds/tiled/first/072.ply which has only 30613 points
+Removing sample_playground/segmented_point_clouds/tiled/first/073.ply which has only 108 points
+Removing sample_playground/segmented_point_clouds/tiled/first/075.ply which has only 92640 points
+Removing sample_playground/segmented_point_clouds/tiled/first/076.ply which has only 162 points
+Removing sample_playground/segmented_point_clouds/tiled/first/077.ply which has only 170 points
+Removing sample_playground/segmented_point_clouds/tiled/first/078.ply which has only 1594 points
+Removing sample_playground/segmented_point_clouds/tiled/first/079.ply which has only 228 points
+Removing sample_playground/segmented_point_clouds/tiled/first/080.ply which has only 126 points
+Removing sample_playground/segmented_point_clouds/tiled/first/081.ply which has only 41 points
+Removing sample_playground/segmented_point_clouds/tiled/first/082.ply which has only 92355 points
+Removing sample_playground/segmented_point_clouds/tiled/first/083.ply which has only 49431 points
+Removing sample_playground/segmented_point_clouds/tiled/first/084.ply which has only 40 points
+Removing sample_playground/segmented_point_clouds/tiled/first/086.ply which has only 352 points
+Removing sample_playground/segmented_point_clouds/tiled/first/087.ply which has only 1472 points
+Removing sample_playground/segmented_point_clouds/tiled/first/088.ply which has only 2177 points
+Removing sample_playground/segmented_point_clouds/tiled/first/089.ply which has only 47 points
+Removing sample_playground/segmented_point_clouds/tiled/first/090.ply which has only 38741 points
+Removing sample_playground/segmented_point_clouds/tiled/first/091.ply which has only 127 points
+Removing sample_playground/segmented_point_clouds/tiled/first/092.ply which has only 20232 points
+Removing sample_playground/segmented_point_clouds/tiled/first/093.ply which has only 1049 points
+Removing sample_playground/segmented_point_clouds/tiled/first/094.ply which has only 34348 points
+Removing sample_playground/segmented_point_clouds/tiled/first/095.ply which has only 665 points
+Removing sample_playground/segmented_point_clouds/tiled/first/096.ply which has only 3596 points
+Removing sample_playground/segmented_point_clouds/tiled/first/097.ply which has only 76 points
+Removing sample_playground/segmented_point_clouds/tiled/first/099.ply which has only 90520 points
+Removing sample_playground/segmented_point_clouds/tiled/first/100.ply which has only 39722 points
+Removing sample_playground/segmented_point_clouds/tiled/first/101.ply which has only 4462 points
+Removing sample_playground/segmented_point_clouds/tiled/first/102.ply which has only 39 points
+Removing sample_playground/segmented_point_clouds/tiled/first/103.ply which has only 886 points
+Removing sample_playground/segmented_point_clouds/tiled/first/105.ply which has only 32347 points
+Removing sample_playground/segmented_point_clouds/tiled/first/106.ply which has only 21 points
+Removing sample_playground/segmented_point_clouds/tiled/first/107.ply which has only 216 points
+Removing sample_playground/segmented_point_clouds/tiled/first/108.ply which has only 117383 points
+Removing sample_playground/segmented_point_clouds/tiled/first/109.ply which has only 150 points
+Removing sample_playground/segmented_point_clouds/tiled/first/110.ply which has only 11576 points
+Removing sample_playground/segmented_point_clouds/tiled/first/111.ply which has only 8 points
+Removing sample_playground/segmented_point_clouds/tiled/first/112.ply which has only 1472 points
+Removing sample_playground/segmented_point_clouds/tiled/first/113.ply which has only 426 points
+Removing sample_playground/segmented_point_clouds/tiled/first/114.ply which has only 71 points
+Removing sample_playground/segmented_point_clouds/tiled/first/115.ply which has only 1180 points
+Removing sample_playground/segmented_point_clouds/tiled/first/116.ply which has only 201 points
+Removing sample_playground/segmented_point_clouds/tiled/first/117.ply which has only 32 points
+Removing sample_playground/segmented_point_clouds/tiled/first/118.ply which has only 17789 points
+Removing sample_playground/segmented_point_clouds/tiled/first/119.ply which has only 1167 points
+Removing sample_playground/segmented_point_clouds/tiled/first/120.ply which has only 1543 points
+Removing sample_playground/segmented_point_clouds/tiled/first/121.ply which has only 200300 points
+Removing sample_playground/segmented_point_clouds/tiled/first/122.ply which has only 15 points
+Removing sample_playground/segmented_point_clouds/tiled/first/123.ply which has only 425 points
+Removing sample_playground/segmented_point_clouds/tiled/first/124.ply which has only 60216 points
+Removing sample_playground/segmented_point_clouds/tiled/first/126.ply which has only 585 points
+Removing sample_playground/segmented_point_clouds/tiled/first/127.ply which has only 167283 points
+Removing sample_playground/segmented_point_clouds/tiled/first/128.ply which has only 11750 points
+Removing sample_playground/segmented_point_clouds/tiled/first/129.ply which has only 6 points
+Removing sample_playground/segmented_point_clouds/tiled/first/130.ply which has only 23653 points
+Removing sample_playground/segmented_point_clouds/tiled/first/131.ply which has only 2759 points
+Removing sample_playground/segmented_point_clouds/tiled/first/132.ply which has only 8054 points
+Removing sample_playground/segmented_point_clouds/tiled/first/133.ply which has only 4 points
+Removing sample_playground/segmented_point_clouds/tiled/first/134.ply which has only 15049 points
+Removing sample_playground/segmented_point_clouds/tiled/first/135.ply which has only 261 points
+Removing sample_playground/segmented_point_clouds/tiled/first/136.ply which has only 242 points
+Removing sample_playground/segmented_point_clouds/tiled/first/137.ply which has only 38 points
+Removing sample_playground/segmented_point_clouds/tiled/first/138.ply which has only 61 points
+Removing sample_playground/segmented_point_clouds/tiled/first/139.ply which has only 130 points
+Removing sample_playground/segmented_point_clouds/tiled/first/141.ply which has only 14 points
+Removing sample_playground/segmented_point_clouds/tiled/first/142.ply which has only 1498 points
+Removing sample_playground/segmented_point_clouds/tiled/first/143.ply which has only 198108 points
+Removing sample_playground/segmented_point_clouds/tiled/first/144.ply which has only 7464 points
+Removing sample_playground/segmented_point_clouds/tiled/first/145.ply which has only 8 points
+Removing sample_playground/segmented_point_clouds/tiled/first/146.ply which has only 7245 points
+Removing sample_playground/segmented_point_clouds/tiled/first/147.ply which has only 10194 points
+Removing sample_playground/segmented_point_clouds/tiled/first/148.ply which has only 73 points
+Removing sample_playground/segmented_point_clouds/tiled/first/149.ply which has only 45012 points
+Removing sample_playground/segmented_point_clouds/tiled/first/150.ply which has only 52 points
+Removing sample_playground/segmented_point_clouds/tiled/first/152.ply which has only 53 points
+Removing sample_playground/segmented_point_clouds/tiled/first/153.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/154.ply which has only 315 points
+Removing sample_playground/segmented_point_clouds/tiled/first/155.ply which has only 59 points
+Removing sample_playground/segmented_point_clouds/tiled/first/156.ply which has only 6 points
+Removing sample_playground/segmented_point_clouds/tiled/first/157.ply which has only 190 points
+Removing sample_playground/segmented_point_clouds/tiled/first/158.ply which has only 264 points
+Removing sample_playground/segmented_point_clouds/tiled/first/159.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/first/160.ply which has only 7 points
+Removing sample_playground/segmented_point_clouds/tiled/first/161.ply which has only 233 points
+Removing sample_playground/segmented_point_clouds/tiled/first/163.ply which has only 4163 points
+Removing sample_playground/segmented_point_clouds/tiled/first/164.ply which has only 3 points
+Removing sample_playground/segmented_point_clouds/tiled/first/165.ply which has only 4 points
+Removing sample_playground/segmented_point_clouds/tiled/first/166.ply which has only 10 points
+Removing sample_playground/segmented_point_clouds/tiled/first/167.ply which has only 54 points
+Removing sample_playground/segmented_point_clouds/tiled/first/168.ply which has only 54167 points
+Removing sample_playground/segmented_point_clouds/tiled/first/169.ply which has only 5 points
+Removing sample_playground/segmented_point_clouds/tiled/first/170.ply which has only 120 points
+Removing sample_playground/segmented_point_clouds/tiled/first/171.ply which has only 6 points
+Removing sample_playground/segmented_point_clouds/tiled/first/172.ply which has only 8 points
+Removing sample_playground/segmented_point_clouds/tiled/first/173.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/first/174.ply which has only 29 points
+Removing sample_playground/segmented_point_clouds/tiled/first/175.ply which has only 197 points
+Removing sample_playground/segmented_point_clouds/tiled/first/176.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/177.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/178.ply which has only 667 points
+Removing sample_playground/segmented_point_clouds/tiled/first/179.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/180.ply which has only 10 points
+Removing sample_playground/segmented_point_clouds/tiled/first/181.ply which has only 5 points
+Removing sample_playground/segmented_point_clouds/tiled/first/184.ply which has only 95 points
+Removing sample_playground/segmented_point_clouds/tiled/first/185.ply which has only 1268 points
+Removing sample_playground/segmented_point_clouds/tiled/first/186.ply which has only 373 points
+Removing sample_playground/segmented_point_clouds/tiled/first/187.ply which has only 12 points
+Removing sample_playground/segmented_point_clouds/tiled/first/189.ply which has only 10390 points
+Removing sample_playground/segmented_point_clouds/tiled/first/190.ply which has only 46435 points
+Removing sample_playground/segmented_point_clouds/tiled/first/191.ply which has only 10 points
+Removing sample_playground/segmented_point_clouds/tiled/first/192.ply which has only 1217 points
+Removing sample_playground/segmented_point_clouds/tiled/first/193.ply which has only 183 points
+Removing sample_playground/segmented_point_clouds/tiled/first/194.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/195.ply which has only 6234 points
+Removing sample_playground/segmented_point_clouds/tiled/first/196.ply which has only 28 points
+Removing sample_playground/segmented_point_clouds/tiled/first/197.ply which has only 134 points
+Removing sample_playground/segmented_point_clouds/tiled/first/198.ply which has only 2584 points
+Removing sample_playground/segmented_point_clouds/tiled/first/199.ply which has only 28 points
+Removing sample_playground/segmented_point_clouds/tiled/first/200.ply which has only 24 points
+Removing sample_playground/segmented_point_clouds/tiled/first/201.ply which has only 131 points
+Removing sample_playground/segmented_point_clouds/tiled/first/203.ply which has only 50918 points
+Removing sample_playground/segmented_point_clouds/tiled/first/204.ply which has only 27 points
+Removing sample_playground/segmented_point_clouds/tiled/first/205.ply which has only 421 points
+Removing sample_playground/segmented_point_clouds/tiled/first/206.ply which has only 1512 points
+Removing sample_playground/segmented_point_clouds/tiled/first/207.ply which has only 24 points
+Removing sample_playground/segmented_point_clouds/tiled/first/208.ply which has only 182467 points
+Removing sample_playground/segmented_point_clouds/tiled/first/209.ply which has only 109 points
+Removing sample_playground/segmented_point_clouds/tiled/first/211.ply which has only 6 points
+Removing sample_playground/segmented_point_clouds/tiled/first/212.ply which has only 41 points
+Removing sample_playground/segmented_point_clouds/tiled/first/213.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/214.ply which has only 143 points
+Removing sample_playground/segmented_point_clouds/tiled/first/215.ply which has only 156 points
+Removing sample_playground/segmented_point_clouds/tiled/first/216.ply which has only 23 points
+Removing sample_playground/segmented_point_clouds/tiled/first/217.ply which has only 10 points
+Removing sample_playground/segmented_point_clouds/tiled/first/218.ply which has only 3 points
+Removing sample_playground/segmented_point_clouds/tiled/first/219.ply which has only 14 points
+Removing sample_playground/segmented_point_clouds/tiled/first/220.ply which has only 110 points
+Removing sample_playground/segmented_point_clouds/tiled/first/221.ply which has only 21 points
+Removing sample_playground/segmented_point_clouds/tiled/first/222.ply which has only 5 points
+Removing sample_playground/segmented_point_clouds/tiled/first/223.ply which has only 28 points
+Removing sample_playground/segmented_point_clouds/tiled/first/224.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/first/225.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/first/226.ply which has only 3 points
+Removing sample_playground/segmented_point_clouds/tiled/first/227.ply which has only 4 points
+Removing sample_playground/segmented_point_clouds/tiled/first/228.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/229.ply which has only 1668 points
+Removing sample_playground/segmented_point_clouds/tiled/first/230.ply which has only 46 points
+Removing sample_playground/segmented_point_clouds/tiled/first/231.ply which has only 284 points
+Removing sample_playground/segmented_point_clouds/tiled/first/232.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/first/233.ply which has only 113405 points
+Removing sample_playground/segmented_point_clouds/tiled/first/234.ply which has only 39 points
+Removing sample_playground/segmented_point_clouds/tiled/first/235.ply which has only 3 points
+Removing sample_playground/segmented_point_clouds/tiled/first/236.ply which has only 3 points
+Removing sample_playground/segmented_point_clouds/tiled/first/237.ply which has only 10798 points
+Removing sample_playground/segmented_point_clouds/tiled/first/238.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/first/239.ply which has only 22 points
+Removing sample_playground/segmented_point_clouds/tiled/first/240.ply which has only 15 points
+Removing sample_playground/segmented_point_clouds/tiled/first/241.ply which has only 4866 points
+Removing sample_playground/segmented_point_clouds/tiled/first/242.ply which has only 332 points
+Removing sample_playground/segmented_point_clouds/tiled/first/243.ply which has only 81 points
+Removing sample_playground/segmented_point_clouds/tiled/first/244.ply which has only 28273 points
+Removing sample_playground/segmented_point_clouds/tiled/first/245.ply which has only 9280 points
+Removing sample_playground/segmented_point_clouds/tiled/first/246.ply which has only 1640 points
+Removing sample_playground/segmented_point_clouds/tiled/first/247.ply which has only 3795 points
+Removing sample_playground/segmented_point_clouds/tiled/first/248.ply which has only 355 points
+Removing sample_playground/segmented_point_clouds/tiled/first/249.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/first/250.ply which has only 977 points
+Removing sample_playground/segmented_point_clouds/tiled/first/251.ply which has only 8 points
+Removing sample_playground/segmented_point_clouds/tiled/first/252.ply which has only 181 points
+Removing sample_playground/segmented_point_clouds/tiled/first/253.ply which has only 9 points
+Removing sample_playground/segmented_point_clouds/tiled/first/254.ply which has only 6 points
+Removing sample_playground/segmented_point_clouds/tiled/first/255.ply which has only 2889 points
+Removing sample_playground/segmented_point_clouds/tiled/first/256.ply which has only 1660 points
+Removing sample_playground/segmented_point_clouds/tiled/first/257.ply which has only 16 points
+Removing sample_playground/segmented_point_clouds/tiled/first/258.ply which has only 3233 points
+Removing sample_playground/segmented_point_clouds/tiled/first/259.ply which has only 21 points
+Removing sample_playground/segmented_point_clouds/tiled/first/260.ply which has only 120 points
+Removing sample_playground/segmented_point_clouds/tiled/first/261.ply which has only 5 points
+Removing sample_playground/segmented_point_clouds/tiled/first/262.ply which has only 9 points
+Removing sample_playground/segmented_point_clouds/tiled/first/263.ply which has only 1279 points
+Removing sample_playground/segmented_point_clouds/tiled/first/264.ply which has only 3315 points
+Removing sample_playground/segmented_point_clouds/tiled/first/265.ply which has only 22 points
+Removing sample_playground/segmented_point_clouds/tiled/first/266.ply which has only 213 points
+Removing sample_playground/segmented_point_clouds/tiled/first/267.ply which has only 14 points
+Removing sample_playground/segmented_point_clouds/tiled/first/268.ply which has only 4438 points
+Removing sample_playground/segmented_point_clouds/tiled/first/269.ply which has only 1641 points
+Removing sample_playground/segmented_point_clouds/tiled/first/270.ply which has only 58 points
+Removing sample_playground/segmented_point_clouds/tiled/first/271.ply which has only 7625 points
+Removing sample_playground/segmented_point_clouds/tiled/first/272.ply which has only 370 points
+Removing sample_playground/segmented_point_clouds/tiled/first/273.ply which has only 8 points
+Removing sample_playground/segmented_point_clouds/tiled/first/274.ply which has only 2876 points
+Removing sample_playground/segmented_point_clouds/tiled/first/275.ply which has only 1310 points
+Removing sample_playground/segmented_point_clouds/tiled/first/276.ply which has only 3957 points
+Removing sample_playground/segmented_point_clouds/tiled/first/277.ply which has only 1520 points
+Removing sample_playground/segmented_point_clouds/tiled/first/278.ply which has only 1673 points
+Removing sample_playground/segmented_point_clouds/tiled/first/279.ply which has only 543 points
+Removing sample_playground/segmented_point_clouds/tiled/first/280.ply which has only 1059 points
+Removing sample_playground/segmented_point_clouds/tiled/first/281.ply which has only 921 points
+Removing sample_playground/segmented_point_clouds/tiled/first/282.ply which has only 1456 points
+Removing sample_playground/segmented_point_clouds/tiled/first/283.ply which has only 3775 points
+Removing sample_playground/segmented_point_clouds/tiled/first/284.ply which has only 647 points
+Removing sample_playground/segmented_point_clouds/tiled/first/285.ply which has only 5367 points
+Removing sample_playground/segmented_point_clouds/tiled/first/286.ply which has only 4602 points
+Removing sample_playground/segmented_point_clouds/tiled/first/287.ply which has only 703 points
+Removing sample_playground/segmented_point_clouds/tiled/first/288.ply which has only 2414 points
+Removing sample_playground/segmented_point_clouds/tiled/first/289.ply which has only 16 points
+Removing sample_playground/segmented_point_clouds/tiled/first/290.ply which has only 422 points
+Removing sample_playground/segmented_point_clouds/tiled/first/291.ply which has only 1562 points
+Removing sample_playground/segmented_point_clouds/tiled/first/292.ply which has only 442 points
+Removing sample_playground/segmented_point_clouds/tiled/first/293.ply which has only 1435 points
+Removing sample_playground/segmented_point_clouds/tiled/first/294.ply which has only 146 points
+Removing sample_playground/segmented_point_clouds/tiled/first/295.ply which has only 309 points
+Removing sample_playground/segmented_point_clouds/tiled/first/296.ply which has only 502 points
+Removing sample_playground/segmented_point_clouds/tiled/first/297.ply which has only 147 points
+Removing sample_playground/segmented_point_clouds/tiled/first/298.ply which has only 499 points
+Removing sample_playground/segmented_point_clouds/tiled/first/299.ply which has only 174 points
+Removing sample_playground/segmented_point_clouds/tiled/first/300.ply which has only 191 points
+Removing sample_playground/segmented_point_clouds/tiled/first/301.ply which has only 634 points
+Removing sample_playground/segmented_point_clouds/tiled/first/302.ply which has only 25 points
+Removing sample_playground/segmented_point_clouds/tiled/first/303.ply which has only 700 points
+Removing sample_playground/segmented_point_clouds/tiled/first/304.ply which has only 333 points
+Removing sample_playground/segmented_point_clouds/tiled/first/305.ply which has only 669 points
+Removing sample_playground/segmented_point_clouds/tiled/first/306.ply which has only 114 points
+Removing sample_playground/segmented_point_clouds/tiled/first/307.ply which has only 204 points
+Removing sample_playground/segmented_point_clouds/tiled/first/308.ply which has only 680 points
+Removing sample_playground/segmented_point_clouds/tiled/first/309.ply which has only 439 points
+Removing sample_playground/segmented_point_clouds/tiled/first/310.ply which has only 2853 points
+Removing sample_playground/segmented_point_clouds/tiled/first/311.ply which has only 57 points
+Removing sample_playground/segmented_point_clouds/tiled/first/312.ply which has only 126 points
+Removing sample_playground/segmented_point_clouds/tiled/first/313.ply which has only 143 points
+Removing sample_playground/segmented_point_clouds/tiled/first/314.ply which has only 257 points
+Removing sample_playground/segmented_point_clouds/tiled/first/315.ply which has only 170 points
+Removing sample_playground/segmented_point_clouds/tiled/first/316.ply which has only 182 points
+Removing sample_playground/segmented_point_clouds/tiled/first/317.ply which has only 191 points
+Removing sample_playground/segmented_point_clouds/tiled/first/318.ply which has only 472 points
+Removing sample_playground/segmented_point_clouds/tiled/first/319.ply which has only 12 points
+Removing sample_playground/segmented_point_clouds/tiled/first/320.ply which has only 106 points
+Removing sample_playground/segmented_point_clouds/tiled/first/321.ply which has only 399 points
+Removing sample_playground/segmented_point_clouds/tiled/first/322.ply which has only 297 points
+Removing sample_playground/segmented_point_clouds/tiled/first/323.ply which has only 327 points
+Removing sample_playground/segmented_point_clouds/tiled/first/324.ply which has only 160 points
+Removing sample_playground/segmented_point_clouds/tiled/first/325.ply which has only 68 points
+Removing sample_playground/segmented_point_clouds/tiled/first/326.ply which has only 137 points
+Removing sample_playground/segmented_point_clouds/tiled/first/327.ply which has only 103 points
+Removing sample_playground/segmented_point_clouds/tiled/first/328.ply which has only 174 points
+Removing sample_playground/segmented_point_clouds/tiled/first/329.ply which has only 25 points
+Removing sample_playground/segmented_point_clouds/tiled/first/330.ply which has only 59 points
+Removing sample_playground/segmented_point_clouds/tiled/first/331.ply which has only 25 points
+Removing sample_playground/segmented_point_clouds/tiled/first/332.ply which has only 67 points
+Removing sample_playground/segmented_point_clouds/tiled/first/333.ply which has only 94 points
+Removing sample_playground/segmented_point_clouds/tiled/first/334.ply which has only 8 points
+Removing sample_playground/segmented_point_clouds/tiled/first/000.ply which has only 161756 points
+Removing sample_playground/segmented_point_clouds/tiled/first/335.ply which has only 21 points
+Removing sample_playground/segmented_point_clouds/tiled/first/336.ply which has only 150 points
+Removing sample_playground/segmented_point_clouds/tiled/first/337.ply which has only 195 points
+Removing sample_playground/segmented_point_clouds/tiled/first/338.ply which has only 23 points
+Removing sample_playground/segmented_point_clouds/tiled/first/339.ply which has only 1262 points
+Removing sample_playground/segmented_point_clouds/tiled/first/340.ply which has only 31 points
+Removing sample_playground/segmented_point_clouds/tiled/first/341.ply which has only 19 points
+Removing sample_playground/segmented_point_clouds/tiled/first/342.ply which has only 8 points
+Removing sample_playground/segmented_point_clouds/tiled/first/343.ply which has only 32 points
+Removing sample_playground/segmented_point_clouds/tiled/first/344.ply which has only 3 points
+Removing sample_playground/segmented_point_clouds/tiled/first/345.ply which has only 7 points
+Removing sample_playground/segmented_point_clouds/tiled/first/346.ply which has only 43 points
+Removing sample_playground/segmented_point_clouds/tiled/first/347.ply which has only 90 points
+Removing sample_playground/segmented_point_clouds/tiled/first/348.ply which has only 843 points
+Removing sample_playground/segmented_point_clouds/tiled/first/349.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/350.ply which has only 200 points
+Removing sample_playground/segmented_point_clouds/tiled/first/351.ply which has only 83 points
+Removing sample_playground/segmented_point_clouds/tiled/first/352.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/first/353.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/354.ply which has only 3 points
+Removing sample_playground/segmented_point_clouds/tiled/first/355.ply which has only 11 points
+Removing sample_playground/segmented_point_clouds/tiled/first/356.ply which has only 22 points
+Removing sample_playground/segmented_point_clouds/tiled/first/357.ply which has only 3 points
+Removing sample_playground/segmented_point_clouds/tiled/first/358.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/first/359.ply which has only 6 points
+Removing sample_playground/segmented_point_clouds/tiled/first/360.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/361.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/362.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/363.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/364.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/365.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/366.ply which has only 6 points
+Removing sample_playground/segmented_point_clouds/tiled/first/367.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/first/368.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/369.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/first/370.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/371.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/372.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/373.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/374.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/first/375.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/376.ply which has only 3 points
+nibio_preprocessing/remove_small_tiles.py:28: RuntimeWarning: divide by zero encountered in double_scalars
+ density = number_of_points / volume
+Removing sample_playground/segmented_point_clouds/tiled/first/377.ply which has only 3 points
+Removing sample_playground/segmented_point_clouds/tiled/first/378.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/379.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/first/380.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/first/381.ply which has only 1 points
+Lowest density: ('172', 'sample_playground/segmented_point_clouds/tiled/first/172.ply', 0.0048223220271421475, 8)
+Highest density: ('153', 'sample_playground/segmented_point_clouds/tiled/first/153.ply', inf, 1)
+Removed 345 tiles
+Removing small tiles from sample_playground/segmented_point_clouds/tiled/second
+Found 382 tiles
+Computed density of all tiles
+Removing sample_playground/segmented_point_clouds/tiled/second/001.ply which has only 24667 points
+Removing sample_playground/segmented_point_clouds/tiled/second/004.ply which has only 3003 points
+Removing sample_playground/segmented_point_clouds/tiled/second/005.ply which has only 2292 points
+Removing sample_playground/segmented_point_clouds/tiled/second/006.ply which has only 923 points
+Removing sample_playground/segmented_point_clouds/tiled/second/007.ply which has only 358 points
+Removing sample_playground/segmented_point_clouds/tiled/second/008.ply which has only 29175 points
+Removing sample_playground/segmented_point_clouds/tiled/second/009.ply which has only 176511 points
+Removing sample_playground/segmented_point_clouds/tiled/second/010.ply which has only 1691 points
+Removing sample_playground/segmented_point_clouds/tiled/second/011.ply which has only 4997 points
+Removing sample_playground/segmented_point_clouds/tiled/second/012.ply which has only 28855 points
+Removing sample_playground/segmented_point_clouds/tiled/second/014.ply which has only 125598 points
+Removing sample_playground/segmented_point_clouds/tiled/second/016.ply which has only 18903 points
+Removing sample_playground/segmented_point_clouds/tiled/second/017.ply which has only 4451 points
+Removing sample_playground/segmented_point_clouds/tiled/second/018.ply which has only 22505 points
+Removing sample_playground/segmented_point_clouds/tiled/second/019.ply which has only 91933 points
+Removing sample_playground/segmented_point_clouds/tiled/second/020.ply which has only 9232 points
+Removing sample_playground/segmented_point_clouds/tiled/second/021.ply which has only 2549 points
+Removing sample_playground/segmented_point_clouds/tiled/second/022.ply which has only 1362 points
+Removing sample_playground/segmented_point_clouds/tiled/second/025.ply which has only 155085 points
+Removing sample_playground/segmented_point_clouds/tiled/second/027.ply which has only 21874 points
+Removing sample_playground/segmented_point_clouds/tiled/second/030.ply which has only 19546 points
+Removing sample_playground/segmented_point_clouds/tiled/second/031.ply which has only 267 points
+Removing sample_playground/segmented_point_clouds/tiled/second/032.ply which has only 1143 points
+Removing sample_playground/segmented_point_clouds/tiled/second/033.ply which has only 7153 points
+Removing sample_playground/segmented_point_clouds/tiled/second/034.ply which has only 428 points
+Removing sample_playground/segmented_point_clouds/tiled/second/038.ply which has only 438 points
+Removing sample_playground/segmented_point_clouds/tiled/second/039.ply which has only 55693 points
+Removing sample_playground/segmented_point_clouds/tiled/second/048.ply which has only 100021 points
+Removing sample_playground/segmented_point_clouds/tiled/second/049.ply which has only 3934 points
+Removing sample_playground/segmented_point_clouds/tiled/second/050.ply which has only 161309 points
+Removing sample_playground/segmented_point_clouds/tiled/second/051.ply which has only 303 points
+Removing sample_playground/segmented_point_clouds/tiled/second/052.ply which has only 3171 points
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+Removing sample_playground/segmented_point_clouds/tiled/second/327.ply which has only 103 points
+Removing sample_playground/segmented_point_clouds/tiled/second/328.ply which has only 174 points
+Removing sample_playground/segmented_point_clouds/tiled/second/329.ply which has only 25 points
+Removing sample_playground/segmented_point_clouds/tiled/second/330.ply which has only 59 points
+Removing sample_playground/segmented_point_clouds/tiled/second/331.ply which has only 25 points
+Removing sample_playground/segmented_point_clouds/tiled/second/332.ply which has only 67 points
+Removing sample_playground/segmented_point_clouds/tiled/second/333.ply which has only 94 points
+Removing sample_playground/segmented_point_clouds/tiled/second/334.ply which has only 8 points
+Removing sample_playground/segmented_point_clouds/tiled/second/000.ply which has only 161756 points
+Removing sample_playground/segmented_point_clouds/tiled/second/335.ply which has only 21 points
+Removing sample_playground/segmented_point_clouds/tiled/second/336.ply which has only 150 points
+Removing sample_playground/segmented_point_clouds/tiled/second/337.ply which has only 195 points
+Removing sample_playground/segmented_point_clouds/tiled/second/338.ply which has only 23 points
+Removing sample_playground/segmented_point_clouds/tiled/second/339.ply which has only 1262 points
+Removing sample_playground/segmented_point_clouds/tiled/second/340.ply which has only 31 points
+Removing sample_playground/segmented_point_clouds/tiled/second/341.ply which has only 19 points
+Removing sample_playground/segmented_point_clouds/tiled/second/342.ply which has only 8 points
+Removing sample_playground/segmented_point_clouds/tiled/second/343.ply which has only 32 points
+Removing sample_playground/segmented_point_clouds/tiled/second/344.ply which has only 3 points
+Removing sample_playground/segmented_point_clouds/tiled/second/345.ply which has only 7 points
+Removing sample_playground/segmented_point_clouds/tiled/second/346.ply which has only 43 points
+Removing sample_playground/segmented_point_clouds/tiled/second/347.ply which has only 90 points
+Removing sample_playground/segmented_point_clouds/tiled/second/348.ply which has only 843 points
+Removing sample_playground/segmented_point_clouds/tiled/second/349.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/second/350.ply which has only 200 points
+Removing sample_playground/segmented_point_clouds/tiled/second/351.ply which has only 83 points
+Removing sample_playground/segmented_point_clouds/tiled/second/352.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/second/353.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/second/354.ply which has only 3 points
+Removing sample_playground/segmented_point_clouds/tiled/second/355.ply which has only 11 points
+Removing sample_playground/segmented_point_clouds/tiled/second/356.ply which has only 22 points
+Removing sample_playground/segmented_point_clouds/tiled/second/357.ply which has only 3 points
+Removing sample_playground/segmented_point_clouds/tiled/second/358.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/second/359.ply which has only 6 points
+Removing sample_playground/segmented_point_clouds/tiled/second/360.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/second/361.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/second/362.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/second/363.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/second/364.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/second/365.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/second/366.ply which has only 6 points
+Removing sample_playground/segmented_point_clouds/tiled/second/367.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/second/368.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/second/369.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/second/370.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/second/371.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/second/372.ply which has only 1 points
+nibio_preprocessing/remove_small_tiles.py:28: RuntimeWarning: divide by zero encountered in double_scalars
+ density = number_of_points / volume
+Removing sample_playground/segmented_point_clouds/tiled/second/373.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/second/374.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/second/375.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/second/376.ply which has only 3 points
+Removing sample_playground/segmented_point_clouds/tiled/second/377.ply which has only 3 points
+Removing sample_playground/segmented_point_clouds/tiled/second/378.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/second/379.ply which has only 1 points
+Removing sample_playground/segmented_point_clouds/tiled/second/380.ply which has only 2 points
+Removing sample_playground/segmented_point_clouds/tiled/second/381.ply which has only 1 points
+Lowest density: ('172', 'sample_playground/segmented_point_clouds/tiled/second/172.ply', 0.0048223220271421475, 8)
+Highest density: ('153', 'sample_playground/segmented_point_clouds/tiled/second/153.ply', inf, 1)
+Removed 345 tiles
+Processing sample_playground/segmented_point_clouds/tiled/first//002.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//002.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/002.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/002.ply with 1707171 points
+global shift: [ 4.12705497 -2.99351369 2.42690805]
+
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generating data blocks: 100%|██████████| 432/432 [00:03<00:00, 126.96it/s]
+Preprocessing done in 4.556957244873047 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 1
+Saved to: sample_playground/segmented_point_clouds/tiled/first/002.segmented.ply
+semantic segmentation done in 41.055182456970215 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//003.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//003.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/003.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/003.ply with 621019 points
+global shift: [3.02946058 5.24516071 3.96758069]
+
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+Preprocessing done in 2.6005756855010986 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/003.segmented.ply
+semantic segmentation done in 22.983898878097534 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//013.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//013.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/013.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/013.ply with 456999 points
+global shift: [-6.52185053 15.32198751 3.75859617]
+
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+Preprocessing done in 2.145287275314331 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/013.segmented.ply
+semantic segmentation done in 17.121191024780273 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//015.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//015.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/015.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/015.ply with 615266 points
+global shift: [-5.04484696 5.94565674 4.39860777]
+
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generating data blocks: 100%|██████████| 468/468 [00:02<00:00, 214.34it/s]
+Preprocessing done in 2.609572172164917 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/015.segmented.ply
+semantic segmentation done in 23.237780332565308 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//023.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//023.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/023.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/023.ply with 1143090 points
+global shift: [-15.69288577 14.43252095 3.70382338]
+
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generating data blocks: 100%|██████████| 432/432 [00:02<00:00, 155.74it/s]
+Preprocessing done in 3.5390512943267822 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/023.segmented.ply
+semantic segmentation done in 34.11253070831299 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//024.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//024.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/024.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/024.ply with 1369793 points
+global shift: [-15.76390113 7.73367894 3.53671407]
+
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generating data blocks: 100%|██████████| 468/468 [00:03<00:00, 152.04it/s]
+Preprocessing done in 3.9989702701568604 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/024.segmented.ply
+semantic segmentation done in 36.40218448638916 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//026.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//026.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
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+slice_thickness 0.2
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/026.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/026.ply with 264870 points
+global shift: [-25.13942493 5.91410012 7.95060452]
+
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generating data blocks: 100%|██████████| 468/468 [00:01<00:00, 292.48it/s]
+Preprocessing done in 1.8264474868774414 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 1
+Saved to: sample_playground/segmented_point_clouds/tiled/first/026.segmented.ply
+semantic segmentation done in 14.998263835906982 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//028.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//028.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/028.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/028.ply with 611500 points
+global shift: [-6.15782955 -3.30480206 5.00269922]
+
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generating data blocks: 100%|██████████| 468/468 [00:02<00:00, 221.40it/s]
+Preprocessing done in 2.5384671688079834 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/028.segmented.ply
+semantic segmentation done in 24.459664821624756 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//029.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//029.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/029.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/029.ply with 313760 points
+global shift: [12.06349452 -4.37607809 4.39743587]
+
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generating data blocks: 100%|██████████| 432/432 [00:01<00:00, 277.36it/s]
+Preprocessing done in 1.806553840637207 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 27
+nan: 11
+Saved to: sample_playground/segmented_point_clouds/tiled/first/029.segmented.ply
+semantic segmentation done in 15.804351329803467 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//035.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//035.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/035.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/035.ply with 752563 points
+global shift: [-15.58320933 -4.31207503 6.42129012]
+
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+Preprocessing done in 2.932404041290283 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/035.segmented.ply
+semantic segmentation done in 25.2038357257843 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//036.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//036.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/036.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/036.ply with 421879 points
+global shift: [-25.72752941 -3.89773027 7.8344028 ]
+
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generating data blocks: 100%|██████████| 468/468 [00:01<00:00, 247.25it/s]
+Preprocessing done in 2.2055842876434326 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/036.segmented.ply
+semantic segmentation done in 20.288933753967285 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//037.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//037.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/037.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/037.ply with 235035 points
+global shift: [-34.36810922 -4.77633369 8.50302827]
+
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+Preprocessing done in 1.7655837535858154 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/037.segmented.ply
+semantic segmentation done in 13.109447240829468 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//040.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//040.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/040.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/040.ply with 795251 points
+global shift: [-26.32818451 -14.10735722 7.21836984]
+
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generating data blocks: 100%|██████████| 468/468 [00:02<00:00, 192.78it/s]
+Preprocessing done in 2.9582433700561523 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/040.segmented.ply
+semantic segmentation done in 26.598994731903076 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//041.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//041.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/041.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/041.ply with 662750 points
+global shift: [-35.65005441 -14.59822521 7.52722627]
+
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generating data blocks: 100%|██████████| 468/468 [00:02<00:00, 211.20it/s]
+Preprocessing done in 2.6598665714263916 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/041.segmented.ply
+semantic segmentation done in 23.003380060195923 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//042.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//042.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/042.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/042.ply with 937424 points
+global shift: [-15.58044416 -14.32459088 5.86428304]
+
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generating data blocks: 100%|██████████| 468/468 [00:02<00:00, 175.52it/s]
+Preprocessing done in 3.295463800430298 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/042.segmented.ply
+semantic segmentation done in 32.19445252418518 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//043.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//043.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
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+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
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+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/043.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/043.ply with 710983 points
+global shift: [ -6.90919471 -12.78867496 5.96407485]
+
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+Preprocessing done in 2.8132944107055664 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/043.segmented.ply
+semantic segmentation done in 25.582654237747192 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//044.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//044.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/044.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/044.ply with 868371 points
+global shift: [-15.94678476 -23.51047161 6.12342013]
+
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generating data blocks: 100%|██████████| 432/432 [00:02<00:00, 182.54it/s]
+Preprocessing done in 2.9642088413238525 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/044.segmented.ply
+semantic segmentation done in 28.215416193008423 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//045.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//045.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/045.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/045.ply with 584237 points
+global shift: [-27.31303231 -32.06703028 7.64861958]
+
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+Preprocessing done in 2.3938117027282715 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 5
+Saved to: sample_playground/segmented_point_clouds/tiled/first/045.segmented.ply
+semantic segmentation done in 20.852300882339478 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//046.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//046.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/046.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/046.ply with 1049384 points
+global shift: [-26.54624447 -24.73891194 7.33214751]
+
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+Preprocessing done in 3.377621650695801 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/046.segmented.ply
+semantic segmentation done in 34.18386888504028 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//047.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//047.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/047.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/047.ply with 533126 points
+global shift: [ 4.05743728 -12.37916376 5.55098952]
+
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+Preprocessing done in 2.3962950706481934 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 102
+nan: 66
+nan: 40
+nan: 17
+Saved to: sample_playground/segmented_point_clouds/tiled/first/047.segmented.ply
+semantic segmentation done in 21.18252992630005 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//062.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//062.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/062.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/062.ply with 647563 points
+global shift: [-35.25675516 -32.17835684 8.49597336]
+
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generating data blocks: 100%|██████████| 468/468 [00:02<00:00, 215.62it/s]
+Preprocessing done in 2.61118745803833 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/062.segmented.ply
+semantic segmentation done in 21.594656705856323 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//063.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//063.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/063.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/063.ply with 1786681 points
+global shift: [-36.18792471 -23.51626487 6.71358011]
+
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generating data blocks: 100%|██████████| 468/468 [00:03<00:00, 127.45it/s]
+Preprocessing done in 4.884562253952026 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/063.segmented.ply
+semantic segmentation done in 44.05445909500122 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//070.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//070.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
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+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/070.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/070.ply with 315885 points
+global shift: [ -7.86862795 -23.30923586 5.98371293]
+
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+Preprocessing done in 1.861487627029419 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 17
+nan: 2
+Saved to: sample_playground/segmented_point_clouds/tiled/first/070.segmented.ply
+semantic segmentation done in 14.951253175735474 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//071.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//071.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/071.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/071.ply with 278902 points
+global shift: [-16.36297578 -31.93975909 7.7697251 ]
+
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+Preprocessing done in 1.7891194820404053 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 108
+nan: 81
+nan: 57
+nan: 33
+nan: 9
+Saved to: sample_playground/segmented_point_clouds/tiled/first/071.segmented.ply
+semantic segmentation done in 14.80152440071106 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//074.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//074.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/074.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/074.ply with 1048808 points
+global shift: [-45.79188457 -24.04873931 8.55157261]
+
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generating data blocks: 100%|██████████| 432/432 [00:02<00:00, 167.06it/s]
+Preprocessing done in 3.288309097290039 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/074.segmented.ply
+semantic segmentation done in 30.804251194000244 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//085.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//085.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/085.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/085.ply with 311612 points
+global shift: [-45.90347573 -15.09293907 11.40635922]
+
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generating data blocks: 100%|██████████| 468/468 [00:01<00:00, 276.66it/s]
+Preprocessing done in 1.9422879219055176 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 43
+nan: 10
+Saved to: sample_playground/segmented_point_clouds/tiled/first/085.segmented.ply
+semantic segmentation done in 17.075053930282593 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//098.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//098.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/098.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/098.ply with 465223 points
+global shift: [-45.75323084 -33.27122268 9.73816864]
+
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generating data blocks: 100%|██████████| 432/432 [00:01<00:00, 237.67it/s]
+Preprocessing done in 2.144965410232544 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 2
+Saved to: sample_playground/segmented_point_clouds/tiled/first/098.segmented.ply
+semantic segmentation done in 21.928184986114502 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//104.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//104.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
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+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/104.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/104.ply with 251822 points
+global shift: [-36.58070002 -43.26270961 10.18780075]
+
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generating data blocks: 100%|██████████| 432/432 [00:01<00:00, 289.31it/s]
+Preprocessing done in 1.7059752941131592 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 3
+Saved to: sample_playground/segmented_point_clouds/tiled/first/104.segmented.ply
+semantic segmentation done in 14.695108413696289 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//125.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//125.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/125.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/125.ply with 269634 points
+global shift: [-46.21848435 -53.28993209 10.0167441 ]
+
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+Preprocessing done in 1.7449860572814941 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/125.segmented.ply
+semantic segmentation done in 14.87131118774414 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//140.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//140.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/140.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/140.ply with 234161 points
+global shift: [-55.52843035 -43.93155209 11.01886083]
+
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+Preprocessing done in 1.6650910377502441 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 9
+Saved to: sample_playground/segmented_point_clouds/tiled/first/140.segmented.ply
+semantic segmentation done in 14.376283645629883 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//151.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//151.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/151.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/151.ply with 1114136 points
+global shift: [-65.34165419 -23.57783809 9.43413696]
+
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generating data blocks: 100%|██████████| 432/432 [00:02<00:00, 159.55it/s]
+Preprocessing done in 3.4398467540740967 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/151.segmented.ply
+semantic segmentation done in 30.699788331985474 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//162.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//162.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
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+grid_resolution 0.5
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+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/162.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/162.ply with 298078 points
+global shift: [-57.04477627 -53.43591597 9.44492089]
+
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+Preprocessing done in 1.7611308097839355 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 4
+Saved to: sample_playground/segmented_point_clouds/tiled/first/162.segmented.ply
+semantic segmentation done in 14.345179557800293 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//182.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//182.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/182.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/182.ply with 656441 points
+global shift: [-56.22476765 -15.48493472 7.34210308]
+
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+Preprocessing done in 2.3828210830688477 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 107
+nan: 50
+nan: 22
+nan: 5
+Saved to: sample_playground/segmented_point_clouds/tiled/first/182.segmented.ply
+semantic segmentation done in 20.51059913635254 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//183.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//183.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/183.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/183.ply with 1146073 points
+global shift: [-56.38312763 -22.36870407 7.55449303]
+
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generating data blocks: 100%|██████████| 432/432 [00:02<00:00, 167.15it/s]
+Preprocessing done in 3.3388900756835938 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/first/183.segmented.ply
+semantic segmentation done in 29.014670848846436 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//188.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//188.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/188.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/188.ply with 532255 points
+global shift: [-75.89355724 -32.44199823 8.65235335]
+
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generating data blocks: 100%|██████████| 396/396 [00:01<00:00, 234.38it/s]
+Preprocessing done in 2.055881977081299 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 113
+nan: 75
+nan: 44
+nan: 23
+nan: 5
+Saved to: sample_playground/segmented_point_clouds/tiled/first/188.segmented.ply
+semantic segmentation done in 17.71169400215149 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//202.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//202.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/202.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/202.ply with 300146 points
+global shift: [-67.225551 -32.05552491 12.13419336]
+
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generating data blocks: 100%|██████████| 432/432 [00:01<00:00, 275.04it/s]
+Preprocessing done in 1.8107883930206299 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 123
+nan: 81
+nan: 52
+nan: 30
+nan: 10
+nan: 2
+Saved to: sample_playground/segmented_point_clouds/tiled/first/202.segmented.ply
+semantic segmentation done in 15.529845237731934 s
+
+Processing sample_playground/segmented_point_clouds/tiled/first//210.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/first//210.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/first/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/first/
+scratch directory: sample_playground/segmented_point_clouds/tiled/first/210.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/first/210.ply with 330673 points
+global shift: [-76.4538441 -25.22604715 11.05057486]
+
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generating data blocks: 100%|██████████| 432/432 [00:01<00:00, 268.98it/s]
+Preprocessing done in 1.8586955070495605 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 82
+nan: 25
+nan: 6
+Saved to: sample_playground/segmented_point_clouds/tiled/first/210.segmented.ply
+semantic segmentation done in 16.4789297580719 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//002.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//002.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/002.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/002.ply with 1707171 points
+global shift: [ 4.12705497 -2.99351369 2.42690805]
+
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generating data blocks: 100%|██████████| 432/432 [00:03<00:00, 126.00it/s]
+Preprocessing done in 4.619910955429077 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/002.segmented.ply
+semantic segmentation done in 43.429479360580444 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//003.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//003.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/003.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/003.ply with 621019 points
+global shift: [3.02946058 5.24516071 3.96758069]
+
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generating data blocks: 100%|██████████| 468/468 [00:02<00:00, 215.85it/s]
+Preprocessing done in 2.609160900115967 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/003.segmented.ply
+semantic segmentation done in 23.413716793060303 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//013.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//013.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/013.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/013.ply with 456999 points
+global shift: [-6.52185053 15.32198751 3.75859617]
+
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+Preprocessing done in 2.124255418777466 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/013.segmented.ply
+semantic segmentation done in 19.693645238876343 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//015.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//015.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
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+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/015.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/015.ply with 615266 points
+global shift: [-5.04484696 5.94565674 4.39860777]
+
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generating data blocks: 100%|██████████| 468/468 [00:02<00:00, 213.24it/s]
+Preprocessing done in 2.6166841983795166 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/015.segmented.ply
+semantic segmentation done in 22.325405597686768 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//023.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//023.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
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+slice_thickness 0.2
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/023.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/023.ply with 1143090 points
+global shift: [-15.69288577 14.43252095 3.70382338]
+
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generating data blocks: 100%|██████████| 432/432 [00:02<00:00, 161.87it/s]
+Preprocessing done in 3.4317514896392822 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/023.segmented.ply
+semantic segmentation done in 30.174113035202026 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//024.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//024.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
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+num_neighbours 5
+slice_thickness 0.2
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/024.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/024.ply with 1369793 points
+global shift: [-15.76390113 7.73367894 3.53671407]
+
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generating data blocks: 100%|██████████| 468/468 [00:03<00:00, 150.35it/s]
+Preprocessing done in 4.0439581871032715 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/024.segmented.ply
+semantic segmentation done in 35.482131004333496 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//026.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//026.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
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+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
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+box_overlap [0.5 0.5 0.25]
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+max_points_per_box 20000
+terrain_class 0
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+grid_resolution 0.5
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/026.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/026.ply with 264870 points
+global shift: [-25.13942493 5.91410012 7.95060452]
+
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generating data blocks: 100%|██████████| 468/468 [00:01<00:00, 286.26it/s]
+Preprocessing done in 1.860422134399414 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/026.segmented.ply
+semantic segmentation done in 15.009282350540161 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//028.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//028.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
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+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
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+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/028.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/028.ply with 611500 points
+global shift: [-6.15782955 -3.30480206 5.00269922]
+
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generating data blocks: 100%|██████████| 468/468 [00:02<00:00, 218.42it/s]
+Preprocessing done in 2.574115753173828 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/028.segmented.ply
+semantic segmentation done in 23.9357693195343 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//029.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//029.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
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+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
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+box_overlap [0.5 0.5 0.25]
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+noise_class 4
+grid_resolution 0.5
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/029.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/029.ply with 313760 points
+global shift: [12.06349452 -4.37607809 4.39743587]
+
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generating data blocks: 100%|██████████| 432/432 [00:01<00:00, 276.05it/s]
+Preprocessing done in 1.8164541721343994 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 25
+nan: 10
+Saved to: sample_playground/segmented_point_clouds/tiled/second/029.segmented.ply
+semantic segmentation done in 15.408679246902466 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//035.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//035.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/035.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/035.ply with 752563 points
+global shift: [-15.58320933 -4.31207503 6.42129012]
+
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generating data blocks: 100%|██████████| 468/468 [00:02<00:00, 193.18it/s]
+Preprocessing done in 2.931957960128784 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/035.segmented.ply
+semantic segmentation done in 27.432368755340576 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//036.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//036.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/036.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/036.ply with 421879 points
+global shift: [-25.72752941 -3.89773027 7.8344028 ]
+
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+Preprocessing done in 2.2052595615386963 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/036.segmented.ply
+semantic segmentation done in 20.00826859474182 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//037.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//037.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/037.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/037.ply with 235035 points
+global shift: [-34.36810922 -4.77633369 8.50302827]
+
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generating data blocks: 100%|██████████| 468/468 [00:01<00:00, 301.26it/s]
+Preprocessing done in 1.7598958015441895 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/037.segmented.ply
+semantic segmentation done in 12.955675840377808 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//040.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//040.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
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+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
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+box_overlap [0.5 0.5 0.25]
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+noise_class 4
+grid_resolution 0.5
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/040.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/040.ply with 795251 points
+global shift: [-26.32818451 -14.10735722 7.21836984]
+
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+Preprocessing done in 2.9761788845062256 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/040.segmented.ply
+semantic segmentation done in 24.417754888534546 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//041.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//041.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
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+grid_resolution 0.5
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+slice_thickness 0.2
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/041.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/041.ply with 662750 points
+global shift: [-35.65005441 -14.59822521 7.52722627]
+
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generating data blocks: 100%|██████████| 468/468 [00:02<00:00, 213.86it/s]
+Preprocessing done in 2.639518976211548 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/041.segmented.ply
+semantic segmentation done in 23.942919969558716 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//042.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//042.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
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+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
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+grid_resolution 0.5
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+slice_thickness 0.2
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/042.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/042.ply with 937424 points
+global shift: [-15.58044416 -14.32459088 5.86428304]
+
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generating data blocks: 100%|██████████| 468/468 [00:02<00:00, 177.82it/s]
+Preprocessing done in 3.2636895179748535 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/042.segmented.ply
+semantic segmentation done in 29.56799077987671 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//043.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//043.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
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+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
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+box_overlap [0.5 0.5 0.25]
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/043.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/043.ply with 710983 points
+global shift: [ -6.90919471 -12.78867496 5.96407485]
+
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generating data blocks: 100%|██████████| 468/468 [00:02<00:00, 201.09it/s]
+Preprocessing done in 2.825183629989624 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/043.segmented.ply
+semantic segmentation done in 25.8668475151062 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//044.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//044.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
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+keep_npy False
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+output_fmt ply
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+box_overlap [0.5 0.5 0.25]
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/044.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/044.ply with 868371 points
+global shift: [-15.94678476 -23.51047161 6.12342013]
+
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+Preprocessing done in 2.998154640197754 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/044.segmented.ply
+semantic segmentation done in 27.45842432975769 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//045.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//045.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/045.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/045.ply with 584237 points
+global shift: [-27.31303231 -32.06703028 7.64861958]
+
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generating data blocks: 100%|██████████| 432/432 [00:02<00:00, 215.40it/s]
+Preprocessing done in 2.4038727283477783 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 20
+Saved to: sample_playground/segmented_point_clouds/tiled/second/045.segmented.ply
+semantic segmentation done in 23.01910400390625 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//046.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//046.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/046.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/046.ply with 1049384 points
+global shift: [-26.54624447 -24.73891194 7.33214751]
+
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generating data blocks: 100%|██████████| 432/432 [00:02<00:00, 163.28it/s]
+Preprocessing done in 3.3559136390686035 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/046.segmented.ply
+semantic segmentation done in 33.33793616294861 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//047.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//047.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
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+slice_thickness 0.2
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/047.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/047.ply with 533126 points
+global shift: [ 4.05743728 -12.37916376 5.55098952]
+
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generating data blocks: 100%|██████████| 468/468 [00:02<00:00, 229.50it/s]
+Preprocessing done in 2.4085593223571777 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 63
+nan: 13
+nan: 4
+nan: 1
+Saved to: sample_playground/segmented_point_clouds/tiled/second/047.segmented.ply
+semantic segmentation done in 21.414371013641357 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//062.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//062.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
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+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
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+slice_thickness 0.2
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/062.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/062.ply with 647563 points
+global shift: [-35.25675516 -32.17835684 8.49597336]
+
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+Preprocessing done in 2.604745388031006 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/062.segmented.ply
+semantic segmentation done in 25.1326847076416 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//063.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//063.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/063.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/063.ply with 1786681 points
+global shift: [-36.18792471 -23.51626487 6.71358011]
+
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generating data blocks: 100%|██████████| 468/468 [00:03<00:00, 123.87it/s]
+Preprocessing done in 5.004253625869751 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 1
+Saved to: sample_playground/segmented_point_clouds/tiled/second/063.segmented.ply
+semantic segmentation done in 36.50187635421753 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//070.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//070.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/070.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/070.ply with 315885 points
+global shift: [ -7.86862795 -23.30923586 5.98371293]
+
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+Preprocessing done in 1.8298020362854004 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 44
+nan: 15
+nan: 3
+Saved to: sample_playground/segmented_point_clouds/tiled/second/070.segmented.ply
+semantic segmentation done in 15.731660842895508 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//071.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//071.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
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+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/071.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/071.ply with 278902 points
+global shift: [-16.36297578 -31.93975909 7.7697251 ]
+
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+Preprocessing done in 1.7584283351898193 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 73
+nan: 35
+nan: 13
+nan: 4
+nan: 1
+Saved to: sample_playground/segmented_point_clouds/tiled/second/071.segmented.ply
+semantic segmentation done in 14.841570138931274 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//074.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//074.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/074.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/074.ply with 1048808 points
+global shift: [-45.79188457 -24.04873931 8.55157261]
+
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generating data blocks: 100%|██████████| 432/432 [00:02<00:00, 164.05it/s]
+Preprocessing done in 3.337578535079956 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/074.segmented.ply
+semantic segmentation done in 33.48652410507202 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//085.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//085.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/085.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/085.ply with 311612 points
+global shift: [-45.90347573 -15.09293907 11.40635922]
+
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generating data blocks: 100%|██████████| 468/468 [00:01<00:00, 275.33it/s]
+Preprocessing done in 1.9467122554779053 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 37
+nan: 16
+nan: 1
+Saved to: sample_playground/segmented_point_clouds/tiled/second/085.segmented.ply
+semantic segmentation done in 17.169092178344727 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//098.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//098.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/098.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/098.ply with 465223 points
+global shift: [-45.75323084 -33.27122268 9.73816864]
+
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generating data blocks: 100%|██████████| 432/432 [00:01<00:00, 237.87it/s]
+Preprocessing done in 2.141940116882324 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 5
+Saved to: sample_playground/segmented_point_clouds/tiled/second/098.segmented.ply
+semantic segmentation done in 21.18420696258545 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//104.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//104.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
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+min_points_per_box 1000
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+terrain_class 0
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/104.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/104.ply with 251822 points
+global shift: [-36.58070002 -43.26270961 10.18780075]
+
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generating data blocks: 100%|██████████| 432/432 [00:01<00:00, 291.74it/s]
+Preprocessing done in 1.698850393295288 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 4
+Saved to: sample_playground/segmented_point_clouds/tiled/second/104.segmented.ply
+semantic segmentation done in 14.325753688812256 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//125.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//125.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
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+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/125.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/125.ply with 269634 points
+global shift: [-46.21848435 -53.28993209 10.0167441 ]
+
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generating data blocks: 100%|██████████| 432/432 [00:01<00:00, 285.46it/s]
+Preprocessing done in 1.7347967624664307 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/125.segmented.ply
+semantic segmentation done in 14.593076944351196 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//140.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//140.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/140.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/140.ply with 234161 points
+global shift: [-55.52843035 -43.93155209 11.01886083]
+
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+Preprocessing done in 1.6724817752838135 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 1
+Saved to: sample_playground/segmented_point_clouds/tiled/second/140.segmented.ply
+semantic segmentation done in 14.411506652832031 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//151.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//151.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/151.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/151.ply with 1114136 points
+global shift: [-65.34165419 -23.57783809 9.43413696]
+
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+Preprocessing done in 3.432525873184204 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+Choosing most confident labels...
+Making dtm...
+nan: 441
+Saved to: sample_playground/segmented_point_clouds/tiled/second/151.segmented.ply
+semantic segmentation done in 30.675760507583618 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//162.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//162.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/162.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/162.ply with 298078 points
+global shift: [-57.04477627 -53.43591597 9.44492089]
+
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+Preprocessing done in 1.7474174499511719 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 1
+Saved to: sample_playground/segmented_point_clouds/tiled/second/162.segmented.ply
+semantic segmentation done in 14.646450996398926 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//182.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//182.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/182.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/182.ply with 656441 points
+global shift: [-56.22476765 -15.48493472 7.34210308]
+
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+Preprocessing done in 2.3887860774993896 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 113
+nan: 46
+nan: 20
+nan: 9
+nan: 3
+Saved to: sample_playground/segmented_point_clouds/tiled/second/182.segmented.ply
+semantic segmentation done in 20.642225742340088 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//183.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//183.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/183.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/183.ply with 1146073 points
+global shift: [-56.38312763 -22.36870407 7.55449303]
+
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generating data blocks: 100%|██████████| 432/432 [00:02<00:00, 168.07it/s]
+Preprocessing done in 3.316805362701416 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 8
+nan: 2
+Saved to: sample_playground/segmented_point_clouds/tiled/second/183.segmented.ply
+semantic segmentation done in 29.679572105407715 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//188.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//188.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/188.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/188.ply with 532255 points
+global shift: [-75.89355724 -32.44199823 8.65235335]
+
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generating data blocks: 100%|██████████| 396/396 [00:01<00:00, 236.09it/s]
+Preprocessing done in 2.0394303798675537 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 102
+nan: 55
+nan: 27
+nan: 15
+nan: 6
+nan: 1
+Saved to: sample_playground/segmented_point_clouds/tiled/second/188.segmented.ply
+semantic segmentation done in 17.129696369171143 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//202.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//202.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/202.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/202.ply with 300146 points
+global shift: [-67.225551 -32.05552491 12.13419336]
+
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+Preprocessing done in 1.8107049465179443 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 122
+nan: 75
+nan: 47
+nan: 29
+nan: 18
+nan: 10
+nan: 4
+Saved to: sample_playground/segmented_point_clouds/tiled/second/202.segmented.ply
+semantic segmentation done in 16.133890628814697 s
+
+Processing sample_playground/segmented_point_clouds/tiled/second//210.ply file...
+
+---- parameters used ----
+point_cloud sample_playground/segmented_point_clouds/tiled/second//210.ply
+params
+odir sample_playground/segmented_point_clouds/tiled/second/
+step 3
+redo None
+tile_index
+buffer 0
+batch_size 10
+num_procs 10
+keep_npy False
+is_wood 1
+model /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/fsct/model/model.pth
+output_fmt ply
+verbose True
+box_dims [6 6 8]
+box_overlap [0.5 0.5 0.25]
+min_points_per_box 1000
+max_points_per_box 20000
+terrain_class 0
+vegetation_class 1
+cwd_class 2
+stem_class 3
+noise_class 4
+grid_resolution 0.5
+ground_height_threshold 0.1
+num_neighbours 5
+slice_thickness 0.2
+slice_increment 0.05
+subsample False
+subsampling_min_spacing 0.01
+min_tree_cyls 10
+max_distance_between_tiles inf
+steps_completed {0: False, 1: False}
+
+----- preprocessing started -----
+output directory: sample_playground/segmented_point_clouds/tiled/second/
+scratch directory: sample_playground/segmented_point_clouds/tiled/second/210.tmp
+read in /home/nibio/mutable-outside-world/code/gitlab_fsct/instance_segmentation_classic/sample_playground/segmented_point_clouds/tiled/second/210.ply with 330673 points
+global shift: [-76.4538441 -25.22604715 11.05057486]
+
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+Preprocessing done in 1.8701179027557373 seconds
+
+----- semantic segmentation started -----
+using: cuda
+
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+/miniconda/envs/pdal-env-1/lib/python3.8/site-packages/numpy/lib/nanfunctions.py:1119: RuntimeWarning: All-NaN slice encountered
+ r, k = function_base._ureduce(a, func=_nanmedian, axis=axis, out=out,
+Choosing most confident labels...
+Making dtm...
+nan: 441
+nan: 94
+nan: 41
+nan: 13
+nan: 4
+Saved to: sample_playground/segmented_point_clouds/tiled/second/210.segmented.ply
+semantic segmentation done in 16.61984395980835 s
+
+Merging the segmented point clouds
+INFO:root:Merging the ply files
+Only merging the ply files
+
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+INFO:root:The file is saved in: sample_playground/segmented_point_clouds/tiled/first/sample_playground/segmented_point_clouds/first.segmented.ply
+INFO:root:Merging was done for 37 number of files
+INFO:root:Done
+INFO:root:Merging the ply files
+Only merging the ply files
+
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+INFO:root:The file is saved in: sample_playground/segmented_point_clouds/tiled/second/sample_playground/segmented_point_clouds/second.segmented.ply
+INFO:root:Merging was done for 37 number of files
+INFO:root:Done
+Renaming sample_playground/segmented_point_clouds/tiled/first to sample_playground/segmented_point_clouds/tiled/first
+Renaming sample_playground/segmented_point_clouds/tiled/second to sample_playground/segmented_point_clouds/tiled/second
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/002.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/002
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/002.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/002
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
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+
+----- skeletonisation started -----
+
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slice data vertically and clustering: 26%|██▌ | 10/39 [00:09<00:19, 1.47it/s]
slice data vertically and clustering: 28%|██▊ | 11/39 [00:09<00:15, 1.84it/s]
slice data vertically and clustering: 31%|███ | 12/39 [00:09<00:11, 2.28it/s]
slice data vertically and clustering: 33%|███▎ | 13/39 [00:10<00:09, 2.81it/s]
slice data vertically and clustering: 36%|███▌ | 14/39 [00:10<00:07, 3.45it/s]
slice data vertically and clustering: 38%|███▊ | 15/39 [00:10<00:05, 4.27it/s]
slice data vertically and clustering: 44%|████▎ | 17/39 [00:10<00:03, 6.23it/s]
slice data vertically and clustering: 49%|████▊ | 19/39 [00:10<00:02, 8.51it/s]
slice data vertically and clustering: 59%|█████▉ | 23/39 [00:10<00:01, 13.98it/s]
slice data vertically and clustering: 82%|████████▏ | 32/39 [00:10<00:00, 29.89it/s]
slice data vertically and clustering: 100%|██████████| 39/39 [00:10<00:00, 3.62it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 86 |
+ 0.00% | 0 / 86 |
+ 0.00% | 0 / 86 |
+ 0.00% | 0 / 86 |
+MMMMMMMMMMMMMMM 0.00% | 0 / 87 |
+ 1.15% | 1 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 86 |
+ 0.00% | 0 / 86 |
+ 0.00% | 0 / 86 |
+ 0.00% | 0 / 86 | MMMMMMMMMMMMMMM 70.11% :::::::::::::::::::::::::::: | 61 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.16% | 1 / 86 |
+ 1.16% | 1 / 86 |
+ 1.16% | 1 / 86 |
+ 1.16% | 1 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 88.51% ::::::::::::::::::::::::::::::::::: | 77 / 87 |
+ 95.40% :::::::::::::::::::::::::::::::::::::: | 83 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 77.01% :::::::::::::::::::::::::::::: | 67 / 87 |
+ 1.15% | 1 / 87 |
+ 82.76% ::::::::::::::::::::::::::::::::: | 72 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 1.16% | 1 / 86 |
+ 86.05% :::::::::::::::::::::::::::::::::: | 74 / 86 |
+ 1.16% | 1 / 86 |
+ 1.16% | 1 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 95.40% :::::::::::::::::::::::::::::::::::::: | 83 / 87 |
+ 95.40% :::::::::::::::::::::::::::::::::::::: | 83 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 77.01% :::::::::::::::::::::::::::::: | 67 / 87 |
+ 1.15% | 1 / 87 |
+ 82.76% ::::::::::::::::::::::::::::::::: | 72 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 97.67% ::::::::::::::::::::::::::::::::::::::: | 84 / 86 |
+ 86.05% :::::::::::::::::::::::::::::::::: | 74 / 86 |
+ 1.16% | 1 / 86 |
+ 96.51% :::::::::::::::::::::::::::::::::::::: | 83 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 95.40% :::::::::::::::::::::::::::::::::::::: | 83 / 87 |
+ 1.15% | 1 / 87 |
+ 87.36% :::::::::::::::::::::::::::::::::: | 76 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 77.01% :::::::::::::::::::::::::::::: | 67 / 87 |
+ 1.15% | 1 / 87 |
+ 82.76% ::::::::::::::::::::::::::::::::: | 72 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 97.67% ::::::::::::::::::::::::::::::::::::::: | 84 / 86 |
+ 86.05% :::::::::::::::::::::::::::::::::: | 74 / 86 |
+ 1.16% | 1 / 86 |
+ 96.51% :::::::::::::::::::::::::::::::::::::: | 83 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 95.40% :::::::::::::::::::::::::::::::::::::: | 83 / 87 |
+ 85.06% :::::::::::::::::::::::::::::::::: | 74 / 87 |
+ 87.36% :::::::::::::::::::::::::::::::::: | 76 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 77.01% :::::::::::::::::::::::::::::: | 67 / 87 |
+ 1.15% | 1 / 87 |
+ 82.76% ::::::::::::::::::::::::::::::::: | 72 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 97.67% ::::::::::::::::::::::::::::::::::::::: | 84 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 1.16% | 1 / 86 |
+ 96.51% :::::::::::::::::::::::::::::::::::::: | 83 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 95.40% :::::::::::::::::::::::::::::::::::::: | 83 / 87 |
+ 85.06% :::::::::::::::::::::::::::::::::: | 74 / 87 |
+ 87.36% :::::::::::::::::::::::::::::::::: | 76 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 77.01% :::::::::::::::::::::::::::::: | 67 / 87 |
+ 1.15% | 1 / 87 |
+ 82.76% ::::::::::::::::::::::::::::::::: | 72 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 1.16% | 1 / 86 |
+ 96.51% :::::::::::::::::::::::::::::::::::::: | 83 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 95.40% :::::::::::::::::::::::::::::::::::::: | 83 / 87 |
+ 85.06% :::::::::::::::::::::::::::::::::: | 74 / 87 |
+ 87.36% :::::::::::::::::::::::::::::::::: | 76 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 77.01% :::::::::::::::::::::::::::::: | 67 / 87 |
+ 1.15% | 1 / 87 |
+ 82.76% ::::::::::::::::::::::::::::::::: | 72 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 1.16% | 1 / 86 |
+ 96.51% :::::::::::::::::::::::::::::::::::::: | 83 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 85.06% :::::::::::::::::::::::::::::::::: | 74 / 87 |
+ 87.36% :::::::::::::::::::::::::::::::::: | 76 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 77.01% :::::::::::::::::::::::::::::: | 67 / 87 |
+ 1.15% | 1 / 87 |
+ 82.76% ::::::::::::::::::::::::::::::::: | 72 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 1.16% | 1 / 86 |
+ 96.51% :::::::::::::::::::::::::::::::::::::: | 83 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 85.06% :::::::::::::::::::::::::::::::::: | 74 / 87 |
+ 87.36% :::::::::::::::::::::::::::::::::: | 76 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 77.01% :::::::::::::::::::::::::::::: | 67 / 87 |
+ 1.15% | 1 / 87 |
+ 82.76% ::::::::::::::::::::::::::::::::: | 72 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 1.16% | 1 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 85.06% :::::::::::::::::::::::::::::::::: | 74 / 87 |
+ 87.36% :::::::::::::::::::::::::::::::::: | 76 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 77.01% :::::::::::::::::::::::::::::: | 67 / 87 |
+ 87.36% :::::::::::::::::::::::::::::::::: | 76 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 1.16% | 1 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 85.06% :::::::::::::::::::::::::::::::::: | 74 / 87 |
+ 87.36% :::::::::::::::::::::::::::::::::: | 76 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 77.01% :::::::::::::::::::::::::::::: | 67 / 87 |
+ 87.36% :::::::::::::::::::::::::::::::::: | 76 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 86.21% :::::::::::::::::::::::::::::::::: | 75 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 1.16% | 1 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 85.06% :::::::::::::::::::::::::::::::::: | 74 / 87 |
+ 87.36% :::::::::::::::::::::::::::::::::: | 76 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 77.01% :::::::::::::::::::::::::::::: | 67 / 87 |
+ 87.36% :::::::::::::::::::::::::::::::::: | 76 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 1.16% | 1 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 85.06% :::::::::::::::::::::::::::::::::: | 74 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 77.01% :::::::::::::::::::::::::::::: | 67 / 87 |
+ 87.36% :::::::::::::::::::::::::::::::::: | 76 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 1.16% | 1 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 85.06% :::::::::::::::::::::::::::::::::: | 74 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 77.01% :::::::::::::::::::::::::::::: | 67 / 87 |
+ 87.36% :::::::::::::::::::::::::::::::::: | 76 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 85.06% :::::::::::::::::::::::::::::::::: | 74 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 77.01% :::::::::::::::::::::::::::::: | 67 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 77.01% :::::::::::::::::::::::::::::: | 67 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/14 [00:00<?, ?it/s]
writing stems to file: 43%|████▎ | 6/14 [00:00<00:00, 51.71it/s]
writing stems to file: 100%|██████████| 14/14 [00:00<00:00, 74.60it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/14 [00:00<?, ?it/s]
7%|▋ | 1/14 [00:00<00:04, 2.84it/s]
21%|██▏ | 3/14 [00:00<00:01, 6.30it/s]
29%|██▊ | 4/14 [00:00<00:01, 6.44it/s]
43%|████▎ | 6/14 [00:00<00:00, 9.09it/s]
57%|█████▋ | 8/14 [00:00<00:00, 10.27it/s]
71%|███████▏ | 10/14 [00:01<00:00, 9.43it/s]
86%|████████▌ | 12/14 [00:01<00:00, 9.73it/s]
100%|██████████| 14/14 [00:01<00:00, 9.67it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/002/0.0/002_T9.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/002/0.0/002_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/002/0.2/002_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/002/0.1/002_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/002/0.3/002_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/002/0.1/002_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/002/0.3/002_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/002/0.0/002_T11.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/002/0.1/002_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/002/0.1/002_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/002/0.0/002_T12.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/002/0.0/002_T10.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/002/0.1/002_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/002/0.0/002_T13.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/003.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/003
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/003.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/003
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:06, 1.09it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:03<00:11, 1.97s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:05<00:09, 1.93s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:07<00:07, 1.85s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:05, 1.92s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:11<00:04, 2.07s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:15<00:02, 2.61s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 2.83s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 2.33s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/39 [00:00<?, ?it/s]
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slice data vertically and clustering: 18%|█▊ | 7/39 [00:09<00:45, 1.41s/it]
slice data vertically and clustering: 21%|██ | 8/39 [00:10<00:36, 1.16s/it]
slice data vertically and clustering: 23%|██▎ | 9/39 [00:10<00:28, 1.05it/s]
slice data vertically and clustering: 26%|██▌ | 10/39 [00:11<00:22, 1.30it/s]
slice data vertically and clustering: 28%|██▊ | 11/39 [00:11<00:16, 1.65it/s]
slice data vertically and clustering: 31%|███ | 12/39 [00:11<00:12, 2.08it/s]
slice data vertically and clustering: 33%|███▎ | 13/39 [00:11<00:09, 2.61it/s]
slice data vertically and clustering: 36%|███▌ | 14/39 [00:11<00:07, 3.21it/s]
slice data vertically and clustering: 38%|███▊ | 15/39 [00:11<00:05, 4.03it/s]
slice data vertically and clustering: 44%|████▎ | 17/39 [00:12<00:03, 5.94it/s]
slice data vertically and clustering: 49%|████▊ | 19/39 [00:12<00:02, 8.07it/s]
slice data vertically and clustering: 56%|█████▋ | 22/39 [00:12<00:01, 12.08it/s]
slice data vertically and clustering: 74%|███████▍ | 29/39 [00:12<00:00, 24.09it/s]
slice data vertically and clustering: 100%|██████████| 39/39 [00:12<00:00, 3.15it/s]fitting convex hulls to clusters
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+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 |
+ 0.00% | 0 / 87 | MMMMMMMMMMMMMMM 65.91% :::::::::::::::::::::::::: | 58 / 88 |
+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 76.14% :::::::::::::::::::::::::::::: | 67 / 88 |
+ 90.91% :::::::::::::::::::::::::::::::::::: | 80 / 88 |
+ 81.82% :::::::::::::::::::::::::::::::: | 72 / 88 |
+ 63.64% ::::::::::::::::::::::::: | 56 / 88 |
+ 1.14% | 1 / 88 |
+ 77.27% :::::::::::::::::::::::::::::: | 68 / 88 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 77 / 88 |
+ 82.95% ::::::::::::::::::::::::::::::::: | 73 / 88 |
+ 73.86% ::::::::::::::::::::::::::::: | 65 / 88 |
+ 84.09% ::::::::::::::::::::::::::::::::: | 74 / 88 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 57.47% :::::::::::::::::::::: | 50 / 87 |
+ 1.15% | 1 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 76.14% :::::::::::::::::::::::::::::: | 67 / 88 |
+ 90.91% :::::::::::::::::::::::::::::::::::: | 80 / 88 |
+ 81.82% :::::::::::::::::::::::::::::::: | 72 / 88 |
+ 63.64% ::::::::::::::::::::::::: | 56 / 88 |
+ 1.14% | 1 / 88 |
+ 77.27% :::::::::::::::::::::::::::::: | 68 / 88 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 77 / 88 |
+ 82.95% ::::::::::::::::::::::::::::::::: | 73 / 88 |
+ 73.86% ::::::::::::::::::::::::::::: | 65 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 1.15% | 1 / 87 |
+ 89.66% ::::::::::::::::::::::::::::::::::: | 78 / 87 |
+ 89.66% ::::::::::::::::::::::::::::::::::: | 78 / 87 |
+ 57.47% :::::::::::::::::::::: | 50 / 87 |
+ 95.40% :::::::::::::::::::::::::::::::::::::: | 83 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.91% :::::::::::::::::::::::::::::::::::: | 80 / 88 |
+ 81.82% :::::::::::::::::::::::::::::::: | 72 / 88 |
+ 63.64% ::::::::::::::::::::::::: | 56 / 88 |
+ 89.77% ::::::::::::::::::::::::::::::::::: | 79 / 88 |
+ 77.27% :::::::::::::::::::::::::::::: | 68 / 88 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 77 / 88 |
+ 82.95% ::::::::::::::::::::::::::::::::: | 73 / 88 |
+ 73.86% ::::::::::::::::::::::::::::: | 65 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 1.15% | 1 / 87 |
+ 89.66% ::::::::::::::::::::::::::::::::::: | 78 / 87 |
+ 89.66% ::::::::::::::::::::::::::::::::::: | 78 / 87 |
+ 57.47% :::::::::::::::::::::: | 50 / 87 |
+ 95.40% :::::::::::::::::::::::::::::::::::::: | 83 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.91% :::::::::::::::::::::::::::::::::::: | 80 / 88 |
+ 81.82% :::::::::::::::::::::::::::::::: | 72 / 88 |
+ 63.64% ::::::::::::::::::::::::: | 56 / 88 |
+ 89.77% ::::::::::::::::::::::::::::::::::: | 79 / 88 |
+ 77.27% :::::::::::::::::::::::::::::: | 68 / 88 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 77 / 88 |
+ 82.95% ::::::::::::::::::::::::::::::::: | 73 / 88 |
+ 73.86% ::::::::::::::::::::::::::::: | 65 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 1.15% | 1 / 87 |
+ 89.66% ::::::::::::::::::::::::::::::::::: | 78 / 87 |
+ 89.66% ::::::::::::::::::::::::::::::::::: | 78 / 87 |
+ 57.47% :::::::::::::::::::::: | 50 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.91% :::::::::::::::::::::::::::::::::::: | 80 / 88 |
+ 81.82% :::::::::::::::::::::::::::::::: | 72 / 88 |
+ 63.64% ::::::::::::::::::::::::: | 56 / 88 |
+ 89.77% ::::::::::::::::::::::::::::::::::: | 79 / 88 |
+ 77.27% :::::::::::::::::::::::::::::: | 68 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 82.95% ::::::::::::::::::::::::::::::::: | 73 / 88 |
+ 73.86% ::::::::::::::::::::::::::::: | 65 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 89.66% ::::::::::::::::::::::::::::::::::: | 78 / 87 |
+ 89.66% ::::::::::::::::::::::::::::::::::: | 78 / 87 |
+ 57.47% :::::::::::::::::::::: | 50 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.91% :::::::::::::::::::::::::::::::::::: | 80 / 88 |
+ 81.82% :::::::::::::::::::::::::::::::: | 72 / 88 |
+ 63.64% ::::::::::::::::::::::::: | 56 / 88 |
+ 89.77% ::::::::::::::::::::::::::::::::::: | 79 / 88 |
+ 77.27% :::::::::::::::::::::::::::::: | 68 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 82.95% ::::::::::::::::::::::::::::::::: | 73 / 88 |
+ 73.86% ::::::::::::::::::::::::::::: | 65 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 89.66% ::::::::::::::::::::::::::::::::::: | 78 / 87 |
+ 57.47% :::::::::::::::::::::: | 50 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.91% :::::::::::::::::::::::::::::::::::: | 80 / 88 |
+ 81.82% :::::::::::::::::::::::::::::::: | 72 / 88 |
+ 63.64% ::::::::::::::::::::::::: | 56 / 88 |
+ 89.77% ::::::::::::::::::::::::::::::::::: | 79 / 88 |
+ 77.27% :::::::::::::::::::::::::::::: | 68 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 82.95% ::::::::::::::::::::::::::::::::: | 73 / 88 |
+ 73.86% ::::::::::::::::::::::::::::: | 65 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 57.47% :::::::::::::::::::::: | 50 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 81.82% :::::::::::::::::::::::::::::::: | 72 / 88 |
+ 63.64% ::::::::::::::::::::::::: | 56 / 88 |
+ 89.77% ::::::::::::::::::::::::::::::::::: | 79 / 88 |
+ 77.27% :::::::::::::::::::::::::::::: | 68 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 82.95% ::::::::::::::::::::::::::::::::: | 73 / 88 |
+ 73.86% ::::::::::::::::::::::::::::: | 65 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 57.47% :::::::::::::::::::::: | 50 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 63.64% ::::::::::::::::::::::::: | 56 / 88 |
+ 89.77% ::::::::::::::::::::::::::::::::::: | 79 / 88 |
+ 77.27% :::::::::::::::::::::::::::::: | 68 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 82.95% ::::::::::::::::::::::::::::::::: | 73 / 88 |
+ 73.86% ::::::::::::::::::::::::::::: | 65 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 57.47% :::::::::::::::::::::: | 50 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 63.64% ::::::::::::::::::::::::: | 56 / 88 |
+ 89.77% ::::::::::::::::::::::::::::::::::: | 79 / 88 |
+ 77.27% :::::::::::::::::::::::::::::: | 68 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 82.95% ::::::::::::::::::::::::::::::::: | 73 / 88 |
+ 73.86% ::::::::::::::::::::::::::::: | 65 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 63.64% ::::::::::::::::::::::::: | 56 / 88 |
+ 89.77% ::::::::::::::::::::::::::::::::::: | 79 / 88 |
+ 77.27% :::::::::::::::::::::::::::::: | 68 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 82.95% ::::::::::::::::::::::::::::::::: | 73 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 63.64% ::::::::::::::::::::::::: | 56 / 88 |
+ 89.77% ::::::::::::::::::::::::::::::::::: | 79 / 88 |
+ 77.27% :::::::::::::::::::::::::::::: | 68 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 89.77% ::::::::::::::::::::::::::::::::::: | 79 / 88 |
+ 77.27% :::::::::::::::::::::::::::::: | 68 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 89.77% ::::::::::::::::::::::::::::::::::: | 79 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/3 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 3/3 [00:00<00:00, 70.46it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/3 [00:00<?, ?it/s]
33%|███▎ | 1/3 [00:00<00:00, 2.44it/s]
100%|██████████| 3/3 [00:00<00:00, 4.76it/s]
100%|██████████| 3/3 [00:00<00:00, 4.34it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/003/0.0/003_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/003/0.0/003_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/003/0.2/003_T0.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/013.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/013
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/013.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/013
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:11, 1.59s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:08, 1.47s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:05<00:10, 2.01s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:07<00:08, 2.06s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:10<00:06, 2.18s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:12<00:04, 2.17s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:16<00:02, 2.83s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 3.06s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 2.51s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/42 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/42 [00:00<00:17, 2.28it/s]
slice data vertically and clustering: 5%|▍ | 2/42 [00:01<00:31, 1.28it/s]
slice data vertically and clustering: 7%|▋ | 3/42 [00:03<00:51, 1.31s/it]
slice data vertically and clustering: 10%|▉ | 4/42 [00:05<01:05, 1.73s/it]
slice data vertically and clustering: 12%|█▏ | 5/42 [00:08<01:12, 1.95s/it]
slice data vertically and clustering: 14%|█▍ | 6/42 [00:09<01:06, 1.84s/it]
slice data vertically and clustering: 17%|█▋ | 7/42 [00:10<00:56, 1.63s/it]
slice data vertically and clustering: 19%|█▉ | 8/42 [00:11<00:47, 1.39s/it]
slice data vertically and clustering: 21%|██▏ | 9/42 [00:12<00:37, 1.14s/it]
slice data vertically and clustering: 24%|██▍ | 10/42 [00:12<00:29, 1.09it/s]
slice data vertically and clustering: 26%|██▌ | 11/42 [00:13<00:22, 1.40it/s]
slice data vertically and clustering: 29%|██▊ | 12/42 [00:13<00:16, 1.79it/s]
slice data vertically and clustering: 31%|███ | 13/42 [00:13<00:12, 2.26it/s]
slice data vertically and clustering: 33%|███▎ | 14/42 [00:13<00:09, 2.83it/s]
slice data vertically and clustering: 36%|███▌ | 15/42 [00:13<00:07, 3.53it/s]
slice data vertically and clustering: 40%|████ | 17/42 [00:13<00:04, 5.35it/s]
slice data vertically and clustering: 48%|████▊ | 20/42 [00:14<00:02, 8.59it/s]
slice data vertically and clustering: 57%|█████▋ | 24/42 [00:14<00:01, 13.89it/s]
slice data vertically and clustering: 81%|████████ | 34/42 [00:14<00:00, 30.57it/s]
slice data vertically and clustering: 100%|██████████| 42/42 [00:14<00:00, 2.95it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 101 |
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+MMMMMMMMMMMMMMM 0.99% | 1 / 101 |
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+ 0.00% | 0 / 100 | MMMMMMMMMMMMMMM 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 44.55% ::::::::::::::::: | 45 / 101 |
+ 0.99% | 1 / 101 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
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+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 62.38% :::::::::::::::::::::::: | 63 / 101 |
+ 78.22% ::::::::::::::::::::::::::::::: | 79 / 101 |
+ 44.55% ::::::::::::::::: | 45 / 101 |
+ 76.24% :::::::::::::::::::::::::::::: | 77 / 101 |
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+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
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+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
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+ 1.00% | 1 / 100 |
+ 82.00% :::::::::::::::::::::::::::::::: | 82 / 100 |
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+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 78.00% ::::::::::::::::::::::::::::::: | 78 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 62.38% :::::::::::::::::::::::: | 63 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 44.55% ::::::::::::::::: | 45 / 101 |
+ 76.24% :::::::::::::::::::::::::::::: | 77 / 101 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 62.00% :::::::::::::::::::::::: | 62 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
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+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 78.00% ::::::::::::::::::::::::::::::: | 78 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 62.38% :::::::::::::::::::::::: | 63 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 44.55% ::::::::::::::::: | 45 / 101 |
+ 76.24% :::::::::::::::::::::::::::::: | 77 / 101 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 62.00% :::::::::::::::::::::::: | 62 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 82.00% :::::::::::::::::::::::::::::::: | 82 / 100 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 85 / 100 |
+ 82.00% :::::::::::::::::::::::::::::::: | 82 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 78.00% ::::::::::::::::::::::::::::::: | 78 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 44.55% ::::::::::::::::: | 45 / 101 |
+ 76.24% :::::::::::::::::::::::::::::: | 77 / 101 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 62.00% :::::::::::::::::::::::: | 62 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 82.00% :::::::::::::::::::::::::::::::: | 82 / 100 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 85 / 100 |
+ 82.00% :::::::::::::::::::::::::::::::: | 82 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 78.00% ::::::::::::::::::::::::::::::: | 78 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 44.55% ::::::::::::::::: | 45 / 101 |
+ 76.24% :::::::::::::::::::::::::::::: | 77 / 101 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 62.00% :::::::::::::::::::::::: | 62 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 85 / 100 |
+ 82.00% :::::::::::::::::::::::::::::::: | 82 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 78.00% ::::::::::::::::::::::::::::::: | 78 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 44.55% ::::::::::::::::: | 45 / 101 |
+ 76.24% :::::::::::::::::::::::::::::: | 77 / 101 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 62.00% :::::::::::::::::::::::: | 62 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 85 / 100 |
+ 82.00% :::::::::::::::::::::::::::::::: | 82 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 78.00% ::::::::::::::::::::::::::::::: | 78 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 44.55% ::::::::::::::::: | 45 / 101 |
+ 76.24% :::::::::::::::::::::::::::::: | 77 / 101 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 62.00% :::::::::::::::::::::::: | 62 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 85 / 100 |
+ 82.00% :::::::::::::::::::::::::::::::: | 82 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 44.55% ::::::::::::::::: | 45 / 101 |
+ 76.24% :::::::::::::::::::::::::::::: | 77 / 101 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 62.00% :::::::::::::::::::::::: | 62 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 85 / 100 |
+ 82.00% :::::::::::::::::::::::::::::::: | 82 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 44.55% ::::::::::::::::: | 45 / 101 |
+ 76.24% :::::::::::::::::::::::::::::: | 77 / 101 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 62.00% :::::::::::::::::::::::: | 62 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 85 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 44.55% ::::::::::::::::: | 45 / 101 |
+ 76.24% :::::::::::::::::::::::::::::: | 77 / 101 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 62.00% :::::::::::::::::::::::: | 62 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 85 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 44.55% ::::::::::::::::: | 45 / 101 |
+ 76.24% :::::::::::::::::::::::::::::: | 77 / 101 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 62.00% :::::::::::::::::::::::: | 62 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 44.55% ::::::::::::::::: | 45 / 101 |
+ 76.24% :::::::::::::::::::::::::::::: | 77 / 101 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 44.55% ::::::::::::::::: | 45 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/6 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 6/6 [00:00<00:00, 89.34it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/6 [00:00<?, ?it/s]
17%|█▋ | 1/6 [00:00<00:01, 3.59it/s]
50%|█████ | 3/6 [00:00<00:00, 8.47it/s]
83%|████████▎ | 5/6 [00:00<00:00, 10.52it/s]
100%|██████████| 6/6 [00:00<00:00, 9.22it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/013/0.4/013_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/013/0.0/013_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/013/0.4/013_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/013/0.2/013_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/013/0.3/013_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/013/0.0/013_T5.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/015.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/015
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/015.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/015
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:06, 1.07it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:06, 1.11s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:03<00:05, 1.19s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:06<00:07, 1.78s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:07, 2.45s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:13<00:05, 2.83s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:16<00:03, 3.04s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 3.27s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 2.57s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/40 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▎ | 1/40 [00:00<00:18, 2.11it/s]
slice data vertically and clustering: 5%|▌ | 2/40 [00:01<00:30, 1.23it/s]
slice data vertically and clustering: 8%|▊ | 3/40 [00:03<00:50, 1.36s/it]
slice data vertically and clustering: 10%|█ | 4/40 [00:06<01:04, 1.80s/it]
slice data vertically and clustering: 12%|█▎ | 5/40 [00:08<01:10, 2.02s/it]
slice data vertically and clustering: 15%|█▌ | 6/40 [00:10<01:05, 1.91s/it]
slice data vertically and clustering: 18%|█▊ | 7/40 [00:11<00:55, 1.69s/it]
slice data vertically and clustering: 20%|██ | 8/40 [00:12<00:46, 1.44s/it]
slice data vertically and clustering: 22%|██▎ | 9/40 [00:12<00:36, 1.19s/it]
slice data vertically and clustering: 25%|██▌ | 10/40 [00:13<00:28, 1.05it/s]
slice data vertically and clustering: 28%|██▊ | 11/40 [00:13<00:21, 1.32it/s]
slice data vertically and clustering: 30%|███ | 12/40 [00:13<00:16, 1.68it/s]
slice data vertically and clustering: 32%|███▎ | 13/40 [00:14<00:12, 2.13it/s]
slice data vertically and clustering: 35%|███▌ | 14/40 [00:14<00:09, 2.68it/s]
slice data vertically and clustering: 38%|███▊ | 15/40 [00:14<00:07, 3.35it/s]
slice data vertically and clustering: 42%|████▎ | 17/40 [00:14<00:04, 5.06it/s]
slice data vertically and clustering: 48%|████▊ | 19/40 [00:14<00:02, 7.04it/s]
slice data vertically and clustering: 55%|█████▌ | 22/40 [00:14<00:01, 10.72it/s]
slice data vertically and clustering: 70%|███████ | 28/40 [00:14<00:00, 19.88it/s]
slice data vertically and clustering: 100%|██████████| 40/40 [00:14<00:00, 2.69it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 105 |
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+MMMMMMMMMMMMMMM 0.00% | 0 / 105 |
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+ 0.00% | 0 / 104 | MMMMMMMMMMMMMMM 0.95% | 1 / 105 |
+ 40.00% :::::::::::::::: | 42 / 105 |
+ 0.95% | 1 / 105 |
+ 0.95% | 1 / 105 |
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+ 0.95% | 1 / 105 |
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+ 0.96% | 1 / 104 |
+ 0.96% | 1 / 104 |
+ 0.96% | 1 / 104 |
+ 0.96% | 1 / 104 | MMMMMMMMMMMMMMM 58.10% ::::::::::::::::::::::: | 61 / 105 |
+ 40.00% :::::::::::::::: | 42 / 105 |
+ 66.67% :::::::::::::::::::::::::: | 70 / 105 |
+ 51.43% :::::::::::::::::::: | 54 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 70.48% :::::::::::::::::::::::::::: | 74 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 79.05% ::::::::::::::::::::::::::::::: | 83 / 105 |
+ 78.85% ::::::::::::::::::::::::::::::: | 82 / 104 |
+ 74.04% ::::::::::::::::::::::::::::: | 77 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 58.10% ::::::::::::::::::::::: | 61 / 105 |
+ 40.00% :::::::::::::::: | 42 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 51.43% :::::::::::::::::::: | 54 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 70.48% :::::::::::::::::::::::::::: | 74 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 79.05% ::::::::::::::::::::::::::::::: | 83 / 105 |
+ 78.85% ::::::::::::::::::::::::::::::: | 82 / 104 |
+ 74.04% ::::::::::::::::::::::::::::: | 77 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 58.10% ::::::::::::::::::::::: | 61 / 105 |
+ 40.00% :::::::::::::::: | 42 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 51.43% :::::::::::::::::::: | 54 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 70.48% :::::::::::::::::::::::::::: | 74 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 79.05% ::::::::::::::::::::::::::::::: | 83 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 74.04% ::::::::::::::::::::::::::::: | 77 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 58.10% ::::::::::::::::::::::: | 61 / 105 |
+ 40.00% :::::::::::::::: | 42 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 51.43% :::::::::::::::::::: | 54 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 70.48% :::::::::::::::::::::::::::: | 74 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 74.04% ::::::::::::::::::::::::::::: | 77 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 58.10% ::::::::::::::::::::::: | 61 / 105 |
+ 40.00% :::::::::::::::: | 42 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 51.43% :::::::::::::::::::: | 54 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 74.04% ::::::::::::::::::::::::::::: | 77 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 58.10% ::::::::::::::::::::::: | 61 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 51.43% :::::::::::::::::::: | 54 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 74.04% ::::::::::::::::::::::::::::: | 77 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 51.43% :::::::::::::::::::: | 54 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 74.04% ::::::::::::::::::::::::::::: | 77 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 51.43% :::::::::::::::::::: | 54 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 74.04% ::::::::::::::::::::::::::::: | 77 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 51.43% :::::::::::::::::::: | 54 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 74.04% ::::::::::::::::::::::::::::: | 77 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 51.43% :::::::::::::::::::: | 54 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 62.86% ::::::::::::::::::::::::: | 66 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 51.43% :::::::::::::::::::: | 54 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 51.43% :::::::::::::::::::: | 54 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 69.52% ::::::::::::::::::::::::::: | 73 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 51.43% :::::::::::::::::::: | 54 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 51.43% :::::::::::::::::::: | 54 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/5 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 5/5 [00:00<00:00, 77.51it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/5 [00:00<?, ?it/s]
20%|██ | 1/5 [00:00<00:01, 3.51it/s]
60%|██████ | 3/5 [00:00<00:00, 7.54it/s]
80%|████████ | 4/5 [00:00<00:00, 8.15it/s]
100%|██████████| 5/5 [00:00<00:00, 8.09it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/015/0.1/015_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/015/0.2/015_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/015/0.3/015_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/015/0.1/015_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/015/0.1/015_T4.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/023.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/023
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/023.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/023
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:02<00:14, 2.04s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:03<00:10, 1.73s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:04<00:07, 1.59s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:06<00:07, 1.76s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:06, 2.01s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:12<00:04, 2.19s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:14<00:02, 2.39s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.51s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.20s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/40 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▎ | 1/40 [00:00<00:10, 3.70it/s]
slice data vertically and clustering: 5%|▌ | 2/40 [00:00<00:17, 2.22it/s]
slice data vertically and clustering: 8%|▊ | 3/40 [00:02<00:32, 1.15it/s]
slice data vertically and clustering: 10%|█ | 4/40 [00:03<00:42, 1.18s/it]
slice data vertically and clustering: 12%|█▎ | 5/40 [00:05<00:45, 1.30s/it]
slice data vertically and clustering: 15%|█▌ | 6/40 [00:06<00:43, 1.28s/it]
slice data vertically and clustering: 18%|█▊ | 7/40 [00:07<00:36, 1.11s/it]
slice data vertically and clustering: 20%|██ | 8/40 [00:07<00:30, 1.05it/s]
slice data vertically and clustering: 22%|██▎ | 9/40 [00:08<00:24, 1.25it/s]
slice data vertically and clustering: 25%|██▌ | 10/40 [00:08<00:19, 1.52it/s]
slice data vertically and clustering: 28%|██▊ | 11/40 [00:09<00:15, 1.89it/s]
slice data vertically and clustering: 30%|███ | 12/40 [00:09<00:11, 2.35it/s]
slice data vertically and clustering: 32%|███▎ | 13/40 [00:09<00:09, 2.89it/s]
slice data vertically and clustering: 35%|███▌ | 14/40 [00:09<00:07, 3.53it/s]
slice data vertically and clustering: 38%|███▊ | 15/40 [00:09<00:05, 4.28it/s]
slice data vertically and clustering: 42%|████▎ | 17/40 [00:09<00:03, 6.30it/s]
slice data vertically and clustering: 50%|█████ | 20/40 [00:09<00:02, 9.89it/s]
slice data vertically and clustering: 62%|██████▎ | 25/40 [00:10<00:00, 17.24it/s]
slice data vertically and clustering: 100%|██████████| 40/40 [00:10<00:00, 3.96it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 98 |
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+MMMMMMMMMMMMMMM 0.00% | 0 / 98 |
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+ 0.00% | 0 / 97 | MMMMMMMMMMMMMMM 66.33% :::::::::::::::::::::::::: | 65 / 98 |
+ 1.02% | 1 / 98 |
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+ 1.03% | 1 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 75.51% :::::::::::::::::::::::::::::: | 74 / 98 |
+ 74.49% ::::::::::::::::::::::::::::: | 73 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 1.02% | 1 / 98 |
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+ 1.02% | 1 / 98 |
+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 |
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+ 1.03% | 1 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 70.10% :::::::::::::::::::::::::::: | 68 / 97 |
+ 85.57% :::::::::::::::::::::::::::::::::: | 83 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 74.49% ::::::::::::::::::::::::::::: | 73 / 98 |
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+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 1.02% | 1 / 98 |
+ 1.02% | 1 / 98 |
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+ 1.02% | 1 / 98 |
+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 |
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+ 1.03% | 1 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 70.10% :::::::::::::::::::::::::::: | 68 / 97 |
+ 85.57% :::::::::::::::::::::::::::::::::: | 83 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 74.49% ::::::::::::::::::::::::::::: | 73 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 1.02% | 1 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 85.57% :::::::::::::::::::::::::::::::::: | 83 / 97 |
+ 1.03% | 1 / 97 |
+ 88.66% ::::::::::::::::::::::::::::::::::: | 86 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 70.10% :::::::::::::::::::::::::::: | 68 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 1.02% | 1 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 85.57% :::::::::::::::::::::::::::::::::: | 83 / 97 |
+ 1.03% | 1 / 97 |
+ 88.66% ::::::::::::::::::::::::::::::::::: | 86 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 70.10% :::::::::::::::::::::::::::: | 68 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 87.76% ::::::::::::::::::::::::::::::::::: | 86 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 85.57% :::::::::::::::::::::::::::::::::: | 83 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 88.66% ::::::::::::::::::::::::::::::::::: | 86 / 97 |
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+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
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+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 87.76% ::::::::::::::::::::::::::::::::::: | 86 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 88.66% ::::::::::::::::::::::::::::::::::: | 86 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 87.76% ::::::::::::::::::::::::::::::::::: | 86 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 87.76% ::::::::::::::::::::::::::::::::::: | 86 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 87.76% ::::::::::::::::::::::::::::::::::: | 86 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 87.76% ::::::::::::::::::::::::::::::::::: | 86 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 87.76% ::::::::::::::::::::::::::::::::::: | 86 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 87.76% ::::::::::::::::::::::::::::::::::: | 86 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 87.76% ::::::::::::::::::::::::::::::::::: | 86 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 87.76% ::::::::::::::::::::::::::::::::::: | 86 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 | MMMMMMMMMMMMMMM 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/20 [00:00<?, ?it/s]
writing stems to file: 50%|█████ | 10/20 [00:00<00:00, 95.30it/s]
writing stems to file: 100%|██████████| 20/20 [00:00<00:00, 110.93it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/20 [00:00<?, ?it/s]
5%|▌ | 1/20 [00:00<00:07, 2.68it/s]
15%|█▌ | 3/20 [00:00<00:02, 6.39it/s]
25%|██▌ | 5/20 [00:00<00:01, 8.89it/s]
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50%|█████ | 10/20 [00:00<00:00, 13.23it/s]
70%|███████ | 14/20 [00:01<00:00, 17.30it/s]
95%|█████████▌| 19/20 [00:01<00:00, 23.20it/s]
100%|██████████| 20/20 [00:01<00:00, 15.35it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.2/023_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.1/023_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.0/023_T19.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.2/023_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.1/023_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.1/023_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.2/023_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.0/023_T9.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.0/023_T13.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.0/023_T16.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.0/023_T11.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.2/023_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.0/023_T17.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.0/023_T15.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.0/023_T18.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.0/023_T12.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.0/023_T10.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.1/023_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.1/023_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/023/0.0/023_T14.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/024.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/024
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/024.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/024
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:12, 1.76s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:03<00:08, 1.46s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:04<00:08, 1.63s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:06<00:06, 1.72s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:05, 1.99s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:11<00:04, 2.18s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:14<00:02, 2.29s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.51s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.15s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/40 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▎ | 1/40 [00:00<00:10, 3.67it/s]
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slice data vertically and clustering: 8%|▊ | 3/40 [00:02<00:32, 1.15it/s]
slice data vertically and clustering: 10%|█ | 4/40 [00:03<00:42, 1.18s/it]
slice data vertically and clustering: 12%|█▎ | 5/40 [00:05<00:45, 1.30s/it]
slice data vertically and clustering: 15%|█▌ | 6/40 [00:06<00:43, 1.28s/it]
slice data vertically and clustering: 18%|█▊ | 7/40 [00:07<00:36, 1.11s/it]
slice data vertically and clustering: 20%|██ | 8/40 [00:07<00:30, 1.05it/s]
slice data vertically and clustering: 22%|██▎ | 9/40 [00:08<00:24, 1.25it/s]
slice data vertically and clustering: 25%|██▌ | 10/40 [00:08<00:19, 1.52it/s]
slice data vertically and clustering: 28%|██▊ | 11/40 [00:09<00:15, 1.89it/s]
slice data vertically and clustering: 30%|███ | 12/40 [00:09<00:11, 2.35it/s]
slice data vertically and clustering: 32%|███▎ | 13/40 [00:09<00:09, 2.90it/s]
slice data vertically and clustering: 35%|███▌ | 14/40 [00:09<00:07, 3.54it/s]
slice data vertically and clustering: 38%|███▊ | 15/40 [00:09<00:05, 4.30it/s]
slice data vertically and clustering: 42%|████▎ | 17/40 [00:09<00:03, 6.33it/s]
slice data vertically and clustering: 50%|█████ | 20/40 [00:09<00:02, 9.92it/s]
slice data vertically and clustering: 62%|██████▎ | 25/40 [00:10<00:00, 17.29it/s]
slice data vertically and clustering: 100%|██████████| 40/40 [00:10<00:00, 3.96it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 98 |
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+MMMMMMMMMMMMMMM 1.02% | 1 / 98 |
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+ 0.00% | 0 / 97 | MMMMMMMMMMMMMMM 63.27% ::::::::::::::::::::::::: | 62 / 98 |
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+ 1.03% | 1 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 84 / 98 |
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+ 1.02% | 1 / 98 |
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+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
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+ 1.03% | 1 / 97 |
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+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 |
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+ 1.03% | 1 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
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+ 85.71% :::::::::::::::::::::::::::::::::: | 84 / 98 |
+ 67.35% :::::::::::::::::::::::::: | 66 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
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+ 84.54% ::::::::::::::::::::::::::::::::: | 82 / 97 |
+ 81.44% :::::::::::::::::::::::::::::::: | 79 / 97 |
+ 72.16% :::::::::::::::::::::::::::: | 70 / 97 |
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+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 |
+ 88.66% ::::::::::::::::::::::::::::::::::: | 86 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
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+ 67.35% :::::::::::::::::::::::::: | 66 / 98 |
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+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 1.03% | 1 / 97 |
+ 88.66% ::::::::::::::::::::::::::::::::::: | 86 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
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+ 67.35% :::::::::::::::::::::::::: | 66 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
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+ 82.47% :::::::::::::::::::::::::::::::: | 80 / 97 |
+ 88.66% ::::::::::::::::::::::::::::::::::: | 86 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
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+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 82.47% :::::::::::::::::::::::::::::::: | 80 / 97 |
+ 88.66% ::::::::::::::::::::::::::::::::::: | 86 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 84 / 98 |
+ 67.35% :::::::::::::::::::::::::: | 66 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 84.54% ::::::::::::::::::::::::::::::::: | 82 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 72.16% :::::::::::::::::::::::::::: | 70 / 97 |
+ 77.32% :::::::::::::::::::::::::::::: | 75 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 82.47% :::::::::::::::::::::::::::::::: | 80 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 84 / 98 |
+ 67.35% :::::::::::::::::::::::::: | 66 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 84.54% ::::::::::::::::::::::::::::::::: | 82 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 72.16% :::::::::::::::::::::::::::: | 70 / 97 |
+ 77.32% :::::::::::::::::::::::::::::: | 75 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 82.47% :::::::::::::::::::::::::::::::: | 80 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 84 / 98 |
+ 67.35% :::::::::::::::::::::::::: | 66 / 98 |
+ 77.55% ::::::::::::::::::::::::::::::: | 76 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 72.16% :::::::::::::::::::::::::::: | 70 / 97 |
+ 77.32% :::::::::::::::::::::::::::::: | 75 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 82.47% :::::::::::::::::::::::::::::::: | 80 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 84 / 98 |
+ 67.35% :::::::::::::::::::::::::: | 66 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 72.16% :::::::::::::::::::::::::::: | 70 / 97 |
+ 77.32% :::::::::::::::::::::::::::::: | 75 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 82.47% :::::::::::::::::::::::::::::::: | 80 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 84 / 98 |
+ 67.35% :::::::::::::::::::::::::: | 66 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 72.16% :::::::::::::::::::::::::::: | 70 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 |
+ 82.47% :::::::::::::::::::::::::::::::: | 80 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 84 / 98 |
+ 67.35% :::::::::::::::::::::::::: | 66 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 72.16% :::::::::::::::::::::::::::: | 70 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 82.47% :::::::::::::::::::::::::::::::: | 80 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 84 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 72.16% :::::::::::::::::::::::::::: | 70 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 82.47% :::::::::::::::::::::::::::::::: | 80 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 72.16% :::::::::::::::::::::::::::: | 70 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 82.47% :::::::::::::::::::::::::::::::: | 80 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 72.16% :::::::::::::::::::::::::::: | 70 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 82.47% :::::::::::::::::::::::::::::::: | 80 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 82.47% :::::::::::::::::::::::::::::::: | 80 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/16 [00:00<?, ?it/s]
writing stems to file: 44%|████▍ | 7/16 [00:00<00:00, 65.56it/s]
writing stems to file: 100%|██████████| 16/16 [00:00<00:00, 89.61it/s]
+adding leaves to stems, this may take a while...
+
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12%|█▎ | 2/16 [00:00<00:04, 3.28it/s]
25%|██▌ | 4/16 [00:00<00:01, 6.09it/s]
38%|███▊ | 6/16 [00:00<00:01, 8.41it/s]
50%|█████ | 8/16 [00:01<00:00, 10.68it/s]
62%|██████▎ | 10/16 [00:01<00:00, 12.74it/s]
81%|████████▏ | 13/16 [00:01<00:00, 16.75it/s]
100%|██████████| 16/16 [00:01<00:00, 11.40it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/024/0.3/024_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/024/0.2/024_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/024/0.3/024_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/024/0.2/024_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/024/0.5/024_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/024/0.2/024_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/024/0.3/024_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/024/0.0/024_T11.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/024/0.0/024_T12.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/024/0.1/024_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/024/0.0/024_T15.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/024/0.2/024_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/024/0.0/024_T13.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/024/0.0/024_T10.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/024/0.0/024_T14.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/024/0.1/024_T9.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/026.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/026
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/026.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/026
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:13, 1.86s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:08, 1.43s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:05<00:09, 1.81s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:07<00:07, 1.95s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:05, 1.89s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:11<00:04, 2.14s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:14<00:02, 2.33s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.46s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.16s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/40 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▎ | 1/40 [00:00<00:10, 3.82it/s]
slice data vertically and clustering: 5%|▌ | 2/40 [00:00<00:16, 2.36it/s]
slice data vertically and clustering: 8%|▊ | 3/40 [00:02<00:29, 1.25it/s]
slice data vertically and clustering: 10%|█ | 4/40 [00:03<00:39, 1.09s/it]
slice data vertically and clustering: 12%|█▎ | 5/40 [00:04<00:42, 1.21s/it]
slice data vertically and clustering: 15%|█▌ | 6/40 [00:06<00:40, 1.18s/it]
slice data vertically and clustering: 18%|█▊ | 7/40 [00:06<00:33, 1.03s/it]
slice data vertically and clustering: 20%|██ | 8/40 [00:07<00:29, 1.10it/s]
slice data vertically and clustering: 22%|██▎ | 9/40 [00:07<00:24, 1.29it/s]
slice data vertically and clustering: 25%|██▌ | 10/40 [00:08<00:19, 1.53it/s]
slice data vertically and clustering: 28%|██▊ | 11/40 [00:08<00:15, 1.89it/s]
slice data vertically and clustering: 30%|███ | 12/40 [00:08<00:12, 2.31it/s]
slice data vertically and clustering: 32%|███▎ | 13/40 [00:08<00:09, 2.81it/s]
slice data vertically and clustering: 35%|███▌ | 14/40 [00:09<00:07, 3.39it/s]
slice data vertically and clustering: 38%|███▊ | 15/40 [00:09<00:06, 4.09it/s]
slice data vertically and clustering: 42%|████▎ | 17/40 [00:09<00:03, 5.93it/s]
slice data vertically and clustering: 48%|████▊ | 19/40 [00:09<00:02, 8.18it/s]
slice data vertically and clustering: 57%|█████▊ | 23/40 [00:09<00:01, 13.86it/s]
slice data vertically and clustering: 92%|█████████▎| 37/40 [00:09<00:00, 40.09it/s]
slice data vertically and clustering: 100%|██████████| 40/40 [00:09<00:00, 4.10it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
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+MMMMMMMMMMMMMMM 1.00% | 1 / 100 |
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+ 0.00% | 0 / 99 | MMMMMMMMMMMMMMM 1.00% | 1 / 100 |
+ 45.00% :::::::::::::::::: | 45 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.01% | 1 / 99 |
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+ 1.01% | 1 / 99 |
+ 1.01% | 1 / 99 |
+ 1.01% | 1 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 45.00% :::::::::::::::::: | 45 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 37.00% :::::::::::::: | 37 / 100 |
+ 72.00% :::::::::::::::::::::::::::: | 72 / 100 |
+ 75.00% :::::::::::::::::::::::::::::: | 75 / 100 |
+ 78.79% ::::::::::::::::::::::::::::::: | 78 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 1.01% | 1 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 78.79% ::::::::::::::::::::::::::::::: | 78 / 99 |
+ 79.80% ::::::::::::::::::::::::::::::: | 79 / 99 |
+ 85.86% :::::::::::::::::::::::::::::::::: | 85 / 99 |
+ 62.63% ::::::::::::::::::::::::: | 62 / 99 |
+ 79.80% ::::::::::::::::::::::::::::::: | 79 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 45.00% :::::::::::::::::: | 45 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 37.00% :::::::::::::: | 37 / 100 |
+ 72.00% :::::::::::::::::::::::::::: | 72 / 100 |
+ 75.00% :::::::::::::::::::::::::::::: | 75 / 100 |
+ 78.79% ::::::::::::::::::::::::::::::: | 78 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 83.84% ::::::::::::::::::::::::::::::::: | 83 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 79.80% ::::::::::::::::::::::::::::::: | 79 / 99 |
+ 85.86% :::::::::::::::::::::::::::::::::: | 85 / 99 |
+ 62.63% ::::::::::::::::::::::::: | 62 / 99 |
+ 79.80% ::::::::::::::::::::::::::::::: | 79 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 45.00% :::::::::::::::::: | 45 / 100 |
+ 71.00% :::::::::::::::::::::::::::: | 71 / 100 |
+ 37.00% :::::::::::::: | 37 / 100 |
+ 72.00% :::::::::::::::::::::::::::: | 72 / 100 |
+ 75.00% :::::::::::::::::::::::::::::: | 75 / 100 |
+ 78.79% ::::::::::::::::::::::::::::::: | 78 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 83.84% ::::::::::::::::::::::::::::::::: | 83 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 79.80% ::::::::::::::::::::::::::::::: | 79 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 62.63% ::::::::::::::::::::::::: | 62 / 99 |
+ 79.80% ::::::::::::::::::::::::::::::: | 79 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 45.00% :::::::::::::::::: | 45 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 37.00% :::::::::::::: | 37 / 100 |
+ 72.00% :::::::::::::::::::::::::::: | 72 / 100 |
+ 75.00% :::::::::::::::::::::::::::::: | 75 / 100 |
+ 78.79% ::::::::::::::::::::::::::::::: | 78 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 83.84% ::::::::::::::::::::::::::::::::: | 83 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 79.80% ::::::::::::::::::::::::::::::: | 79 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 62.63% ::::::::::::::::::::::::: | 62 / 99 |
+ 79.80% ::::::::::::::::::::::::::::::: | 79 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 45.00% :::::::::::::::::: | 45 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 37.00% :::::::::::::: | 37 / 100 |
+ 72.00% :::::::::::::::::::::::::::: | 72 / 100 |
+ 75.00% :::::::::::::::::::::::::::::: | 75 / 100 |
+ 78.79% ::::::::::::::::::::::::::::::: | 78 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 83.84% ::::::::::::::::::::::::::::::::: | 83 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 79.80% ::::::::::::::::::::::::::::::: | 79 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 79.80% ::::::::::::::::::::::::::::::: | 79 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 45.00% :::::::::::::::::: | 45 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 37.00% :::::::::::::: | 37 / 100 |
+ 72.00% :::::::::::::::::::::::::::: | 72 / 100 |
+ 75.00% :::::::::::::::::::::::::::::: | 75 / 100 |
+ 78.79% ::::::::::::::::::::::::::::::: | 78 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 83.84% ::::::::::::::::::::::::::::::::: | 83 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 79.80% ::::::::::::::::::::::::::::::: | 79 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 37.00% :::::::::::::: | 37 / 100 |
+ 72.00% :::::::::::::::::::::::::::: | 72 / 100 |
+ 75.00% :::::::::::::::::::::::::::::: | 75 / 100 |
+ 78.79% ::::::::::::::::::::::::::::::: | 78 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 83.84% ::::::::::::::::::::::::::::::::: | 83 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 79.80% ::::::::::::::::::::::::::::::: | 79 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 37.00% :::::::::::::: | 37 / 100 |
+ 72.00% :::::::::::::::::::::::::::: | 72 / 100 |
+ 75.00% :::::::::::::::::::::::::::::: | 75 / 100 |
+ 78.79% ::::::::::::::::::::::::::::::: | 78 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 83.84% ::::::::::::::::::::::::::::::::: | 83 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 79.80% ::::::::::::::::::::::::::::::: | 79 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 37.00% :::::::::::::: | 37 / 100 |
+ 72.00% :::::::::::::::::::::::::::: | 72 / 100 |
+ 75.00% :::::::::::::::::::::::::::::: | 75 / 100 |
+ 78.79% ::::::::::::::::::::::::::::::: | 78 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 83.84% ::::::::::::::::::::::::::::::::: | 83 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 79.80% ::::::::::::::::::::::::::::::: | 79 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 37.00% :::::::::::::: | 37 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 75.00% :::::::::::::::::::::::::::::: | 75 / 100 |
+ 78.79% ::::::::::::::::::::::::::::::: | 78 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 83.84% ::::::::::::::::::::::::::::::::: | 83 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 79.80% ::::::::::::::::::::::::::::::: | 79 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 37.00% :::::::::::::: | 37 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 75.00% :::::::::::::::::::::::::::::: | 75 / 100 |
+ 78.79% ::::::::::::::::::::::::::::::: | 78 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 83.84% ::::::::::::::::::::::::::::::::: | 83 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 37.00% :::::::::::::: | 37 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 75.00% :::::::::::::::::::::::::::::: | 75 / 100 |
+ 78.79% ::::::::::::::::::::::::::::::: | 78 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 83.84% ::::::::::::::::::::::::::::::::: | 83 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 37.00% :::::::::::::: | 37 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 78.79% ::::::::::::::::::::::::::::::: | 78 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 83.84% ::::::::::::::::::::::::::::::::: | 83 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 37.00% :::::::::::::: | 37 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 83.84% ::::::::::::::::::::::::::::::::: | 83 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 37.00% :::::::::::::: | 37 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/5 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 5/5 [00:00<00:00, 115.66it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/5 [00:00<?, ?it/s]
20%|██ | 1/5 [00:00<00:01, 3.10it/s]
60%|██████ | 3/5 [00:00<00:00, 7.64it/s]
100%|██████████| 5/5 [00:00<00:00, 9.38it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/026/0.0/026_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/026/0.0/026_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/026/0.3/026_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/026/0.1/026_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/026/0.0/026_T4.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/028.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/028
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/028.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/028
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:06, 1.09it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:07, 1.21s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:03<00:07, 1.42s/it]
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read in neighbouring tiles: 88%|████████▊ | 7/8 [00:15<00:02, 2.70s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 3.22s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 2.50s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/39 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/39 [00:00<00:19, 1.99it/s]
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slice data vertically and clustering: 10%|█ | 4/39 [00:06<01:04, 1.85s/it]
slice data vertically and clustering: 13%|█▎ | 5/39 [00:09<01:15, 2.22s/it]
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slice data vertically and clustering: 18%|█▊ | 7/39 [00:11<00:56, 1.77s/it]
slice data vertically and clustering: 21%|██ | 8/39 [00:12<00:46, 1.51s/it]
slice data vertically and clustering: 23%|██▎ | 9/39 [00:13<00:36, 1.23s/it]
slice data vertically and clustering: 26%|██▌ | 10/39 [00:14<00:28, 1.01it/s]
slice data vertically and clustering: 28%|██▊ | 11/39 [00:14<00:22, 1.26it/s]
slice data vertically and clustering: 31%|███ | 12/39 [00:14<00:16, 1.59it/s]
slice data vertically and clustering: 33%|███▎ | 13/39 [00:14<00:12, 2.01it/s]
slice data vertically and clustering: 36%|███▌ | 14/39 [00:14<00:10, 2.49it/s]
slice data vertically and clustering: 38%|███▊ | 15/39 [00:15<00:07, 3.06it/s]
slice data vertically and clustering: 41%|████ | 16/39 [00:15<00:06, 3.76it/s]
slice data vertically and clustering: 46%|████▌ | 18/39 [00:15<00:03, 5.46it/s]
slice data vertically and clustering: 51%|█████▏ | 20/39 [00:15<00:02, 7.45it/s]
slice data vertically and clustering: 59%|█████▉ | 23/39 [00:15<00:01, 11.09it/s]
slice data vertically and clustering: 74%|███████▍ | 29/39 [00:15<00:00, 20.57it/s]
slice data vertically and clustering: 100%|██████████| 39/39 [00:15<00:00, 2.47it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 96 |
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+ 0.00% | 0 / 95 | MMMMMMMMMMMMMMM 1.04% | 1 / 96 |
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+ 1.05% | 1 / 95 | MMMMMMMMMMMMMMM 70.83% :::::::::::::::::::::::::::: | 68 / 96 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
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+ 78.12% ::::::::::::::::::::::::::::::: | 75 / 96 |
+ 1.04% | 1 / 96 |
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+ 82.29% :::::::::::::::::::::::::::::::: | 79 / 96 |
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+ 88.42% ::::::::::::::::::::::::::::::::::: | 84 / 95 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 85.26% :::::::::::::::::::::::::::::::::: | 81 / 95 | MMMMMMMMMMMMMMM 70.83% :::::::::::::::::::::::::::: | 68 / 96 |
+ 73.96% ::::::::::::::::::::::::::::: | 71 / 96 |
+ 53.12% ::::::::::::::::::::: | 51 / 96 |
+ 78.12% ::::::::::::::::::::::::::::::: | 75 / 96 |
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+ 82.11% :::::::::::::::::::::::::::::::: | 78 / 95 |
+ 88.42% ::::::::::::::::::::::::::::::::::: | 84 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 85.26% :::::::::::::::::::::::::::::::::: | 81 / 95 | MMMMMMMMMMMMMMM 70.83% :::::::::::::::::::::::::::: | 68 / 96 |
+ 73.96% ::::::::::::::::::::::::::::: | 71 / 96 |
+ 53.12% ::::::::::::::::::::: | 51 / 96 |
+ 78.12% ::::::::::::::::::::::::::::::: | 75 / 96 |
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+ 82.29% :::::::::::::::::::::::::::::::: | 79 / 96 |
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+ 82.11% :::::::::::::::::::::::::::::::: | 78 / 95 |
+ 88.42% ::::::::::::::::::::::::::::::::::: | 84 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
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+ 85.42% :::::::::::::::::::::::::::::::::: | 82 / 96 |
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+ 53.12% ::::::::::::::::::::: | 51 / 96 |
+ 78.12% ::::::::::::::::::::::::::::::: | 75 / 96 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 70.83% :::::::::::::::::::::::::::: | 68 / 96 |
+ 73.96% ::::::::::::::::::::::::::::: | 71 / 96 |
+ 53.12% ::::::::::::::::::::: | 51 / 96 |
+ 78.12% ::::::::::::::::::::::::::::::: | 75 / 96 |
+ 85.42% :::::::::::::::::::::::::::::::::: | 82 / 96 |
+ 66.67% :::::::::::::::::::::::::: | 64 / 96 |
+ 82.29% :::::::::::::::::::::::::::::::: | 79 / 96 |
+ 85.42% :::::::::::::::::::::::::::::::::: | 82 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 73.96% ::::::::::::::::::::::::::::: | 71 / 96 |
+ 53.12% ::::::::::::::::::::: | 51 / 96 |
+ 78.12% ::::::::::::::::::::::::::::::: | 75 / 96 |
+ 85.42% :::::::::::::::::::::::::::::::::: | 82 / 96 |
+ 66.67% :::::::::::::::::::::::::: | 64 / 96 |
+ 82.29% :::::::::::::::::::::::::::::::: | 79 / 96 |
+ 85.42% :::::::::::::::::::::::::::::::::: | 82 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 53.12% ::::::::::::::::::::: | 51 / 96 |
+ 78.12% ::::::::::::::::::::::::::::::: | 75 / 96 |
+ 85.42% :::::::::::::::::::::::::::::::::: | 82 / 96 |
+ 66.67% :::::::::::::::::::::::::: | 64 / 96 |
+ 82.29% :::::::::::::::::::::::::::::::: | 79 / 96 |
+ 85.42% :::::::::::::::::::::::::::::::::: | 82 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 53.12% ::::::::::::::::::::: | 51 / 96 |
+ 78.12% ::::::::::::::::::::::::::::::: | 75 / 96 |
+ 85.42% :::::::::::::::::::::::::::::::::: | 82 / 96 |
+ 66.67% :::::::::::::::::::::::::: | 64 / 96 |
+ 82.29% :::::::::::::::::::::::::::::::: | 79 / 96 |
+ 85.42% :::::::::::::::::::::::::::::::::: | 82 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 53.12% ::::::::::::::::::::: | 51 / 96 |
+ 78.12% ::::::::::::::::::::::::::::::: | 75 / 96 |
+ 85.42% :::::::::::::::::::::::::::::::::: | 82 / 96 |
+ 66.67% :::::::::::::::::::::::::: | 64 / 96 |
+ 82.29% :::::::::::::::::::::::::::::::: | 79 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 53.12% ::::::::::::::::::::: | 51 / 96 |
+ 78.12% ::::::::::::::::::::::::::::::: | 75 / 96 |
+ 85.42% :::::::::::::::::::::::::::::::::: | 82 / 96 |
+ 66.67% :::::::::::::::::::::::::: | 64 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 78.12% ::::::::::::::::::::::::::::::: | 75 / 96 |
+ 85.42% :::::::::::::::::::::::::::::::::: | 82 / 96 |
+ 66.67% :::::::::::::::::::::::::: | 64 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 78.12% ::::::::::::::::::::::::::::::: | 75 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 66.67% :::::::::::::::::::::::::: | 64 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 78.12% ::::::::::::::::::::::::::::::: | 75 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/2 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 2/2 [00:00<00:00, 64.28it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/2 [00:00<?, ?it/s]
50%|█████ | 1/2 [00:00<00:00, 1.88it/s]
100%|██████████| 2/2 [00:00<00:00, 3.61it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/028/0.3/028_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/028/0.0/028_T1.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/029.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/029
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/029.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/029
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:02<00:16, 2.29s/it]
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read in neighbouring tiles: 88%|████████▊ | 7/8 [00:14<00:02, 2.31s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.39s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.17s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/39 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/39 [00:00<00:11, 3.25it/s]
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slice data vertically and clustering: 21%|██ | 8/39 [00:07<00:27, 1.11it/s]
slice data vertically and clustering: 23%|██▎ | 9/39 [00:08<00:22, 1.33it/s]
slice data vertically and clustering: 26%|██▌ | 10/39 [00:08<00:17, 1.67it/s]
slice data vertically and clustering: 28%|██▊ | 11/39 [00:08<00:13, 2.09it/s]
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slice data vertically and clustering: 33%|███▎ | 13/39 [00:09<00:08, 3.25it/s]
slice data vertically and clustering: 36%|███▌ | 14/39 [00:09<00:06, 4.06it/s]
slice data vertically and clustering: 41%|████ | 16/39 [00:09<00:03, 5.93it/s]
slice data vertically and clustering: 46%|████▌ | 18/39 [00:09<00:02, 8.09it/s]
slice data vertically and clustering: 54%|█████▍ | 21/39 [00:09<00:01, 12.08it/s]
slice data vertically and clustering: 72%|███████▏ | 28/39 [00:09<00:00, 23.82it/s]
slice data vertically and clustering: 100%|██████████| 39/39 [00:09<00:00, 4.01it/s]fitting convex hulls to clusters
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+ 1.19% | 1 / 84 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 68 / 85 |
+ 89.41% ::::::::::::::::::::::::::::::::::: | 76 / 85 |
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+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
+ 1.19% | 1 / 84 |
+ 94.05% ::::::::::::::::::::::::::::::::::::: | 79 / 84 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 68 / 85 |
+ 89.41% ::::::::::::::::::::::::::::::::::: | 76 / 85 |
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+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
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+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
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+ 1.19% | 1 / 84 |
+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
+ 1.19% | 1 / 84 |
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+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
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+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 90.48% :::::::::::::::::::::::::::::::::::: | 76 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 78.57% ::::::::::::::::::::::::::::::: | 66 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 90.48% :::::::::::::::::::::::::::::::::::: | 76 / 84 |
+ 1.19% | 1 / 84 |
+ 91.67% :::::::::::::::::::::::::::::::::::: | 77 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 90.48% :::::::::::::::::::::::::::::::::::: | 76 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 78.57% ::::::::::::::::::::::::::::::: | 66 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 90.48% :::::::::::::::::::::::::::::::::::: | 76 / 84 |
+ 1.19% | 1 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 90.48% :::::::::::::::::::::::::::::::::::: | 76 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 78.57% ::::::::::::::::::::::::::::::: | 66 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 95.24% :::::::::::::::::::::::::::::::::::::: | 80 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 90.48% :::::::::::::::::::::::::::::::::::: | 76 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 78.57% ::::::::::::::::::::::::::::::: | 66 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 78.57% ::::::::::::::::::::::::::::::: | 66 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/3 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 3/3 [00:00<00:00, 94.37it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/3 [00:00<?, ?it/s]
33%|███▎ | 1/3 [00:00<00:00, 3.24it/s]
100%|██████████| 3/3 [00:00<00:00, 7.53it/s]
100%|██████████| 3/3 [00:00<00:00, 6.65it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/029/0.2/029_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/029/0.3/029_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/029/0.1/029_T2.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/035.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/035
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/035.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/035
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:06, 1.07it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:08, 1.39s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:04<00:06, 1.39s/it]
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read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:06, 2.14s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:11<00:04, 2.15s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:14<00:02, 2.41s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.61s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.18s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/40 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▎ | 1/40 [00:00<00:13, 2.90it/s]
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slice data vertically and clustering: 10%|█ | 4/40 [00:03<00:42, 1.18s/it]
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slice data vertically and clustering: 15%|█▌ | 6/40 [00:06<00:42, 1.25s/it]
slice data vertically and clustering: 18%|█▊ | 7/40 [00:07<00:36, 1.12s/it]
slice data vertically and clustering: 20%|██ | 8/40 [00:08<00:30, 1.05it/s]
slice data vertically and clustering: 22%|██▎ | 9/40 [00:08<00:25, 1.22it/s]
slice data vertically and clustering: 25%|██▌ | 10/40 [00:09<00:20, 1.44it/s]
slice data vertically and clustering: 28%|██▊ | 11/40 [00:09<00:16, 1.71it/s]
slice data vertically and clustering: 30%|███ | 12/40 [00:09<00:13, 2.07it/s]
slice data vertically and clustering: 32%|███▎ | 13/40 [00:09<00:10, 2.50it/s]
slice data vertically and clustering: 35%|███▌ | 14/40 [00:09<00:08, 2.98it/s]
slice data vertically and clustering: 38%|███▊ | 15/40 [00:10<00:07, 3.55it/s]
slice data vertically and clustering: 40%|████ | 16/40 [00:10<00:05, 4.23it/s]
slice data vertically and clustering: 45%|████▌ | 18/40 [00:10<00:03, 5.95it/s]
slice data vertically and clustering: 50%|█████ | 20/40 [00:10<00:02, 7.98it/s]
slice data vertically and clustering: 57%|█████▊ | 23/40 [00:10<00:01, 11.67it/s]
slice data vertically and clustering: 78%|███████▊ | 31/40 [00:10<00:00, 25.18it/s]
slice data vertically and clustering: 100%|██████████| 40/40 [00:10<00:00, 3.70it/s]fitting convex hulls to clusters
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 73.47% ::::::::::::::::::::::::::::: | 72 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/9 [00:00<?, ?it/s]
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writing stems to file: 100%|██████████| 9/9 [00:00<00:00, 85.04it/s]
+adding leaves to stems, this may take a while...
+
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100%|██████████| 9/9 [00:00<00:00, 9.40it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/035/0.1/035_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/035/0.1/035_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/035/0.1/035_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/035/0.2/035_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/035/0.4/035_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/035/0.0/035_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/035/0.1/035_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/035/0.0/035_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/035/0.0/035_T7.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/036.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/036
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/036.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/036
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
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read in neighbouring tiles: 100%|██████████| 8/8 [00:14<00:00, 1.78s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/38 [00:00<?, ?it/s]
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slice data vertically and clustering: 21%|██ | 8/38 [00:07<00:26, 1.13it/s]
slice data vertically and clustering: 24%|██▎ | 9/38 [00:07<00:22, 1.31it/s]
slice data vertically and clustering: 26%|██▋ | 10/38 [00:08<00:18, 1.53it/s]
slice data vertically and clustering: 29%|██▉ | 11/38 [00:08<00:14, 1.81it/s]
slice data vertically and clustering: 32%|███▏ | 12/38 [00:08<00:11, 2.18it/s]
slice data vertically and clustering: 34%|███▍ | 13/38 [00:09<00:09, 2.62it/s]
slice data vertically and clustering: 37%|███▋ | 14/38 [00:09<00:07, 3.12it/s]
slice data vertically and clustering: 39%|███▉ | 15/38 [00:09<00:06, 3.70it/s]
slice data vertically and clustering: 42%|████▏ | 16/38 [00:09<00:04, 4.40it/s]
slice data vertically and clustering: 47%|████▋ | 18/38 [00:09<00:03, 6.24it/s]
slice data vertically and clustering: 53%|█████▎ | 20/38 [00:09<00:02, 8.44it/s]
slice data vertically and clustering: 61%|██████ | 23/38 [00:09<00:01, 12.58it/s]
slice data vertically and clustering: 79%|███████▉ | 30/38 [00:09<00:00, 24.85it/s]
slice data vertically and clustering: 100%|██████████| 38/38 [00:10<00:00, 3.80it/s]fitting convex hulls to clusters
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/8 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 8/8 [00:00<00:00, 96.96it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/8 [00:00<?, ?it/s]
12%|█▎ | 1/8 [00:00<00:01, 4.25it/s]
38%|███▊ | 3/8 [00:00<00:00, 9.60it/s]
62%|██████▎ | 5/8 [00:00<00:00, 11.10it/s]
88%|████████▊ | 7/8 [00:00<00:00, 12.64it/s]
100%|██████████| 8/8 [00:00<00:00, 12.09it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/036/0.4/036_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/036/0.2/036_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/036/0.1/036_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/036/0.6/036_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/036/0.1/036_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/036/0.0/036_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/036/0.0/036_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/036/0.0/036_T7.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/037.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/037
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/037.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/037
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:04, 1.74it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:01<00:05, 1.14it/s]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:03<00:05, 1.16s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:04<00:04, 1.14s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:05<00:03, 1.18s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:07<00:02, 1.44s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:11<00:02, 2.16s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:14<00:00, 2.48s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:14<00:00, 1.78s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/38 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/38 [00:00<00:14, 2.49it/s]
slice data vertically and clustering: 5%|▌ | 2/38 [00:01<00:19, 1.83it/s]
slice data vertically and clustering: 8%|▊ | 3/38 [00:02<00:26, 1.32it/s]
slice data vertically and clustering: 11%|█ | 4/38 [00:03<00:30, 1.11it/s]
slice data vertically and clustering: 13%|█▎ | 5/38 [00:04<00:34, 1.05s/it]
slice data vertically and clustering: 16%|█▌ | 6/38 [00:05<00:34, 1.07s/it]
slice data vertically and clustering: 18%|█▊ | 7/38 [00:06<00:31, 1.02s/it]
slice data vertically and clustering: 21%|██ | 8/38 [00:07<00:27, 1.10it/s]
slice data vertically and clustering: 24%|██▎ | 9/38 [00:07<00:23, 1.26it/s]
slice data vertically and clustering: 26%|██▋ | 10/38 [00:08<00:19, 1.46it/s]
slice data vertically and clustering: 29%|██▉ | 11/38 [00:08<00:15, 1.71it/s]
slice data vertically and clustering: 32%|███▏ | 12/38 [00:08<00:12, 2.01it/s]
slice data vertically and clustering: 34%|███▍ | 13/38 [00:09<00:10, 2.42it/s]
slice data vertically and clustering: 37%|███▋ | 14/38 [00:09<00:08, 2.91it/s]
slice data vertically and clustering: 39%|███▉ | 15/38 [00:09<00:06, 3.48it/s]
slice data vertically and clustering: 42%|████▏ | 16/38 [00:09<00:05, 4.15it/s]
slice data vertically and clustering: 47%|████▋ | 18/38 [00:09<00:03, 5.89it/s]
slice data vertically and clustering: 53%|█████▎ | 20/38 [00:09<00:02, 7.96it/s]
slice data vertically and clustering: 61%|██████ | 23/38 [00:09<00:01, 11.76it/s]
slice data vertically and clustering: 79%|███████▉ | 30/38 [00:10<00:00, 23.36it/s]
slice data vertically and clustering: 100%|██████████| 38/38 [00:10<00:00, 3.77it/s]fitting convex hulls to clusters
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+ 0.00% | 0 / 99 | MMMMMMMMMMMMMMM 65.00% :::::::::::::::::::::::::: | 65 / 100 |
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+ 1.00% | 1 / 100 |
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+ 1.00% | 1 / 100 |
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+ 1.01% | 1 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
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+ 1.00% | 1 / 100 |
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+ 1.00% | 1 / 100 |
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+ 86.87% :::::::::::::::::::::::::::::::::: | 86 / 99 |
+ 1.01% | 1 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
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+ 1.00% | 1 / 100 |
+ 56.00% :::::::::::::::::::::: | 56 / 100 |
+ 86.87% :::::::::::::::::::::::::::::::::: | 86 / 99 |
+ 1.01% | 1 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 1.00% | 1 / 100 |
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+ 86.87% :::::::::::::::::::::::::::::::::: | 86 / 99 |
+ 1.01% | 1 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
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+ 86.87% :::::::::::::::::::::::::::::::::: | 86 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
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+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
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+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/2 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 2/2 [00:00<00:00, 94.11it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/2 [00:00<?, ?it/s]
50%|█████ | 1/2 [00:00<00:00, 2.85it/s]
100%|██████████| 2/2 [00:00<00:00, 4.97it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/037/0.5/037_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/037/0.2/037_T1.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/040.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/040
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/040.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/040
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:06, 1.00it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:06, 1.04s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:04<00:07, 1.51s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:06<00:07, 1.82s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:08<00:05, 1.80s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:12<00:05, 2.52s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:15<00:02, 2.81s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:19<00:00, 3.05s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:19<00:00, 2.39s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/35 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/35 [00:00<00:16, 2.04it/s]
slice data vertically and clustering: 6%|▌ | 2/35 [00:01<00:26, 1.26it/s]
slice data vertically and clustering: 9%|▊ | 3/35 [00:02<00:32, 1.02s/it]
slice data vertically and clustering: 11%|█▏ | 4/35 [00:04<00:36, 1.18s/it]
slice data vertically and clustering: 14%|█▍ | 5/35 [00:05<00:40, 1.36s/it]
slice data vertically and clustering: 17%|█▋ | 6/35 [00:07<00:41, 1.42s/it]
slice data vertically and clustering: 20%|██ | 7/35 [00:08<00:37, 1.36s/it]
slice data vertically and clustering: 23%|██▎ | 8/35 [00:09<00:33, 1.24s/it]
slice data vertically and clustering: 26%|██▌ | 9/35 [00:10<00:28, 1.10s/it]
slice data vertically and clustering: 29%|██▊ | 10/35 [00:10<00:23, 1.07it/s]
slice data vertically and clustering: 31%|███▏ | 11/35 [00:11<00:18, 1.27it/s]
slice data vertically and clustering: 34%|███▍ | 12/35 [00:11<00:15, 1.52it/s]
slice data vertically and clustering: 37%|███▋ | 13/35 [00:12<00:12, 1.81it/s]
slice data vertically and clustering: 40%|████ | 14/35 [00:12<00:09, 2.21it/s]
slice data vertically and clustering: 43%|████▎ | 15/35 [00:12<00:07, 2.68it/s]
slice data vertically and clustering: 46%|████▌ | 16/35 [00:12<00:05, 3.24it/s]
slice data vertically and clustering: 49%|████▊ | 17/35 [00:12<00:04, 3.92it/s]
slice data vertically and clustering: 54%|█████▍ | 19/35 [00:12<00:02, 5.67it/s]
slice data vertically and clustering: 60%|██████ | 21/35 [00:13<00:01, 7.66it/s]
slice data vertically and clustering: 69%|██████▊ | 24/35 [00:13<00:00, 11.41it/s]
slice data vertically and clustering: 89%|████████▊ | 31/35 [00:13<00:00, 22.74it/s]
slice data vertically and clustering: 100%|██████████| 35/35 [00:13<00:00, 2.62it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 108 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+MMMMMMMMMMMMMMM 0.00% | 0 / 108 |
+ 0.93% | 1 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 |
+ 0.00% | 0 / 107 | MMMMMMMMMMMMMMM 0.93% | 1 / 108 |
+ 62.62% ::::::::::::::::::::::::: | 67 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 72 / 108 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 58.88% ::::::::::::::::::::::: | 63 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 61.68% :::::::::::::::::::::::: | 66 / 107 |
+ 70.09% :::::::::::::::::::::::::::: | 75 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 |
+ 55.14% :::::::::::::::::::::: | 59 / 107 |
+ 72.90% ::::::::::::::::::::::::::::: | 78 / 107 |
+ 77.57% ::::::::::::::::::::::::::::::: | 83 / 107 |
+ 77.57% ::::::::::::::::::::::::::::::: | 83 / 107 |
+ 73.83% ::::::::::::::::::::::::::::: | 79 / 107 |
+ 77.57% ::::::::::::::::::::::::::::::: | 83 / 107 |
+ 0.93% | 1 / 107 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 72 / 108 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 58.88% ::::::::::::::::::::::: | 63 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 61.68% :::::::::::::::::::::::: | 66 / 107 |
+ 70.09% :::::::::::::::::::::::::::: | 75 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 |
+ 55.14% :::::::::::::::::::::: | 59 / 107 |
+ 72.90% ::::::::::::::::::::::::::::: | 78 / 107 |
+ 77.57% ::::::::::::::::::::::::::::::: | 83 / 107 |
+ 77.57% ::::::::::::::::::::::::::::::: | 83 / 107 |
+ 73.83% ::::::::::::::::::::::::::::: | 79 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 0.93% | 1 / 107 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 72 / 108 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 58.88% ::::::::::::::::::::::: | 63 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 61.68% :::::::::::::::::::::::: | 66 / 107 |
+ 70.09% :::::::::::::::::::::::::::: | 75 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 |
+ 55.14% :::::::::::::::::::::: | 59 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 77.57% ::::::::::::::::::::::::::::::: | 83 / 107 |
+ 77.57% ::::::::::::::::::::::::::::::: | 83 / 107 |
+ 73.83% ::::::::::::::::::::::::::::: | 79 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 0.93% | 1 / 107 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 72 / 108 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 58.88% ::::::::::::::::::::::: | 63 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 61.68% :::::::::::::::::::::::: | 66 / 107 |
+ 70.09% :::::::::::::::::::::::::::: | 75 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 0.93% | 1 / 107 |
+ 0.93% | 1 / 107 |
+ 55.14% :::::::::::::::::::::: | 59 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 77.57% ::::::::::::::::::::::::::::::: | 83 / 107 |
+ 73.83% ::::::::::::::::::::::::::::: | 79 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 0.93% | 1 / 107 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 72 / 108 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 58.88% ::::::::::::::::::::::: | 63 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 61.68% :::::::::::::::::::::::: | 66 / 107 |
+ 70.09% :::::::::::::::::::::::::::: | 75 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 71.03% :::::::::::::::::::::::::::: | 76 / 107 |
+ 0.93% | 1 / 107 |
+ 55.14% :::::::::::::::::::::: | 59 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 77.57% ::::::::::::::::::::::::::::::: | 83 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 0.93% | 1 / 107 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 72 / 108 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 58.88% ::::::::::::::::::::::: | 63 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 61.68% :::::::::::::::::::::::: | 66 / 107 |
+ 70.09% :::::::::::::::::::::::::::: | 75 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 71.03% :::::::::::::::::::::::::::: | 76 / 107 |
+ 78.50% ::::::::::::::::::::::::::::::: | 84 / 107 |
+ 55.14% :::::::::::::::::::::: | 59 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 0.93% | 1 / 107 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 72 / 108 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 58.88% ::::::::::::::::::::::: | 63 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 61.68% :::::::::::::::::::::::: | 66 / 107 |
+ 70.09% :::::::::::::::::::::::::::: | 75 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 71.03% :::::::::::::::::::::::::::: | 76 / 107 |
+ 78.50% ::::::::::::::::::::::::::::::: | 84 / 107 |
+ 55.14% :::::::::::::::::::::: | 59 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 0.93% | 1 / 107 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 72 / 108 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 61.68% :::::::::::::::::::::::: | 66 / 107 |
+ 70.09% :::::::::::::::::::::::::::: | 75 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 71.03% :::::::::::::::::::::::::::: | 76 / 107 |
+ 78.50% ::::::::::::::::::::::::::::::: | 84 / 107 |
+ 55.14% :::::::::::::::::::::: | 59 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 80.37% :::::::::::::::::::::::::::::::: | 86 / 107 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 72 / 108 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 61.68% :::::::::::::::::::::::: | 66 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 71.03% :::::::::::::::::::::::::::: | 76 / 107 |
+ 78.50% ::::::::::::::::::::::::::::::: | 84 / 107 |
+ 55.14% :::::::::::::::::::::: | 59 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 80.37% :::::::::::::::::::::::::::::::: | 86 / 107 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 108 / 108 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 61.68% :::::::::::::::::::::::: | 66 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 71.03% :::::::::::::::::::::::::::: | 76 / 107 |
+ 78.50% ::::::::::::::::::::::::::::::: | 84 / 107 |
+ 55.14% :::::::::::::::::::::: | 59 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 80.37% :::::::::::::::::::::::::::::::: | 86 / 107 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 108 / 108 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 61.68% :::::::::::::::::::::::: | 66 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 71.03% :::::::::::::::::::::::::::: | 76 / 107 |
+ 78.50% ::::::::::::::::::::::::::::::: | 84 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 80.37% :::::::::::::::::::::::::::::::: | 86 / 107 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 108 / 108 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 69.16% ::::::::::::::::::::::::::: | 74 / 107 |
+ 71.03% :::::::::::::::::::::::::::: | 76 / 107 |
+ 78.50% ::::::::::::::::::::::::::::::: | 84 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 80.37% :::::::::::::::::::::::::::::::: | 86 / 107 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 108 / 108 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 71.03% :::::::::::::::::::::::::::: | 76 / 107 |
+ 78.50% ::::::::::::::::::::::::::::::: | 84 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 80.37% :::::::::::::::::::::::::::::::: | 86 / 107 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 108 / 108 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 71.03% :::::::::::::::::::::::::::: | 76 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 80.37% :::::::::::::::::::::::::::::::: | 86 / 107 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 108 / 108 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 71.03% :::::::::::::::::::::::::::: | 76 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 108 / 108 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 3 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/11 [00:00<?, ?it/s]
writing stems to file: 91%|█████████ | 10/11 [00:00<00:00, 98.24it/s]
writing stems to file: 100%|██████████| 11/11 [00:00<00:00, 100.73it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/11 [00:00<?, ?it/s]
9%|▉ | 1/11 [00:00<00:02, 4.69it/s]
27%|██▋ | 3/11 [00:00<00:00, 10.25it/s]
45%|████▌ | 5/11 [00:00<00:00, 12.11it/s]
64%|██████▎ | 7/11 [00:00<00:00, 12.12it/s]
91%|█████████ | 10/11 [00:00<00:00, 14.59it/s]
100%|██████████| 11/11 [00:00<00:00, 12.54it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/040/0.2/040_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/040/0.2/040_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/040/0.0/040_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/040/0.2/040_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/040/0.1/040_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/040/0.2/040_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/040/0.0/040_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/040/0.1/040_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/040/0.0/040_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/040/0.0/040_T9.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/040/0.0/040_T10.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/041.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/041
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/041.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/041
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:02<00:17, 2.48s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:04<00:12, 2.16s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:05<00:09, 1.86s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:07<00:07, 1.79s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:10<00:06, 2.16s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:13<00:05, 2.52s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:16<00:02, 2.60s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:19<00:00, 2.81s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:19<00:00, 2.46s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/36 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/36 [00:00<00:18, 1.92it/s]
slice data vertically and clustering: 6%|▌ | 2/36 [00:01<00:25, 1.33it/s]
slice data vertically and clustering: 8%|▊ | 3/36 [00:02<00:31, 1.04it/s]
slice data vertically and clustering: 11%|█ | 4/36 [00:04<00:35, 1.12s/it]
slice data vertically and clustering: 14%|█▍ | 5/36 [00:05<00:39, 1.28s/it]
slice data vertically and clustering: 17%|█▋ | 6/36 [00:06<00:39, 1.30s/it]
slice data vertically and clustering: 19%|█▉ | 7/36 [00:08<00:35, 1.24s/it]
slice data vertically and clustering: 22%|██▏ | 8/36 [00:08<00:31, 1.12s/it]
slice data vertically and clustering: 25%|██▌ | 9/36 [00:09<00:25, 1.05it/s]
slice data vertically and clustering: 28%|██▊ | 10/36 [00:09<00:21, 1.23it/s]
slice data vertically and clustering: 31%|███ | 11/36 [00:10<00:17, 1.46it/s]
slice data vertically and clustering: 33%|███▎ | 12/36 [00:10<00:13, 1.74it/s]
slice data vertically and clustering: 36%|███▌ | 13/36 [00:10<00:10, 2.13it/s]
slice data vertically and clustering: 39%|███▉ | 14/36 [00:11<00:08, 2.60it/s]
slice data vertically and clustering: 42%|████▏ | 15/36 [00:11<00:06, 3.19it/s]
slice data vertically and clustering: 44%|████▍ | 16/36 [00:11<00:05, 3.91it/s]
slice data vertically and clustering: 50%|█████ | 18/36 [00:11<00:03, 5.72it/s]
slice data vertically and clustering: 56%|█████▌ | 20/36 [00:11<00:02, 7.79it/s]
slice data vertically and clustering: 64%|██████▍ | 23/36 [00:11<00:01, 11.69it/s]
slice data vertically and clustering: 83%|████████▎ | 30/36 [00:11<00:00, 23.46it/s]
slice data vertically and clustering: 100%|██████████| 36/36 [00:11<00:00, 3.03it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 101 |
+ 0.00% | 0 / 101 |
+ 0.00% | 0 / 101 |
+ 0.00% | 0 / 101 |
+ 0.00% | 0 / 101 |
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+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+MMMMMMMMMMMMMMM 0.00% | 0 / 101 |
+ 0.99% | 1 / 101 |
+ 0.00% | 0 / 101 |
+ 0.00% | 0 / 101 |
+ 0.00% | 0 / 101 |
+ 0.00% | 0 / 101 |
+ 0.00% | 0 / 101 |
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+ 0.00% | 0 / 101 |
+ 0.00% | 0 / 101 |
+ 0.00% | 0 / 101 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 | MMMMMMMMMMMMMMM 66.34% :::::::::::::::::::::::::: | 67 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 | MMMMMMMMMMMMMMM 66.34% :::::::::::::::::::::::::: | 67 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 60.40% :::::::::::::::::::::::: | 61 / 101 |
+ 65.35% :::::::::::::::::::::::::: | 66 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 75.25% :::::::::::::::::::::::::::::: | 76 / 101 |
+ 0.99% | 1 / 101 |
+ 70.30% :::::::::::::::::::::::::::: | 71 / 101 |
+ 70.00% :::::::::::::::::::::::::::: | 70 / 100 |
+ 79.00% ::::::::::::::::::::::::::::::: | 79 / 100 |
+ 1.00% | 1 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 1.00% | 1 / 100 | MMMMMMMMMMMMMMM 66.34% :::::::::::::::::::::::::: | 67 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 60.40% :::::::::::::::::::::::: | 61 / 101 |
+ 65.35% :::::::::::::::::::::::::: | 66 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 75.25% :::::::::::::::::::::::::::::: | 76 / 101 |
+ 0.99% | 1 / 101 |
+ 70.30% :::::::::::::::::::::::::::: | 71 / 101 |
+ 70.00% :::::::::::::::::::::::::::: | 70 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 1.00% | 1 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 1.00% | 1 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 60.40% :::::::::::::::::::::::: | 61 / 101 |
+ 65.35% :::::::::::::::::::::::::: | 66 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 75.25% :::::::::::::::::::::::::::::: | 76 / 101 |
+ 0.99% | 1 / 101 |
+ 70.30% :::::::::::::::::::::::::::: | 71 / 101 |
+ 70.00% :::::::::::::::::::::::::::: | 70 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 1.00% | 1 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 1.00% | 1 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 60.40% :::::::::::::::::::::::: | 61 / 101 |
+ 65.35% :::::::::::::::::::::::::: | 66 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 75.25% :::::::::::::::::::::::::::::: | 76 / 101 |
+ 0.99% | 1 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 70.00% :::::::::::::::::::::::::::: | 70 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 1.00% | 1 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 1.00% | 1 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 60.40% :::::::::::::::::::::::: | 61 / 101 |
+ 65.35% :::::::::::::::::::::::::: | 66 / 101 |
+ 0.99% | 1 / 101 |
+ 68.32% ::::::::::::::::::::::::::: | 69 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 0.99% | 1 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 70.00% :::::::::::::::::::::::::::: | 70 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 79.00% ::::::::::::::::::::::::::::::: | 79 / 100 |
+ 83.00% ::::::::::::::::::::::::::::::::: | 83 / 100 |
+ 84.00% ::::::::::::::::::::::::::::::::: | 84 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 60.40% :::::::::::::::::::::::: | 61 / 101 |
+ 65.35% :::::::::::::::::::::::::: | 66 / 101 |
+ 0.99% | 1 / 101 |
+ 68.32% ::::::::::::::::::::::::::: | 69 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 0.99% | 1 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 70.00% :::::::::::::::::::::::::::: | 70 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 79.00% ::::::::::::::::::::::::::::::: | 79 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 84.00% ::::::::::::::::::::::::::::::::: | 84 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 65.35% :::::::::::::::::::::::::: | 66 / 101 |
+ 0.99% | 1 / 101 |
+ 68.32% ::::::::::::::::::::::::::: | 69 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 0.99% | 1 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 70.00% :::::::::::::::::::::::::::: | 70 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 79.00% ::::::::::::::::::::::::::::::: | 79 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 84.00% ::::::::::::::::::::::::::::::::: | 84 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 65.35% :::::::::::::::::::::::::: | 66 / 101 |
+ 77.23% :::::::::::::::::::::::::::::: | 78 / 101 |
+ 68.32% ::::::::::::::::::::::::::: | 69 / 101 |
+ 0.99% | 1 / 101 |
+ 80.20% :::::::::::::::::::::::::::::::: | 81 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 72.28% :::::::::::::::::::::::::::: | 73 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 79.00% ::::::::::::::::::::::::::::::: | 79 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 84.00% ::::::::::::::::::::::::::::::::: | 84 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 65.35% :::::::::::::::::::::::::: | 66 / 101 |
+ 77.23% :::::::::::::::::::::::::::::: | 78 / 101 |
+ 68.32% ::::::::::::::::::::::::::: | 69 / 101 |
+ 73.27% ::::::::::::::::::::::::::::: | 74 / 101 |
+ 80.20% :::::::::::::::::::::::::::::::: | 81 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 72.28% :::::::::::::::::::::::::::: | 73 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 79.00% ::::::::::::::::::::::::::::::: | 79 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 77.23% :::::::::::::::::::::::::::::: | 78 / 101 |
+ 68.32% ::::::::::::::::::::::::::: | 69 / 101 |
+ 73.27% ::::::::::::::::::::::::::::: | 74 / 101 |
+ 80.20% :::::::::::::::::::::::::::::::: | 81 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 72.28% :::::::::::::::::::::::::::: | 73 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 79.00% ::::::::::::::::::::::::::::::: | 79 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 77.23% :::::::::::::::::::::::::::::: | 78 / 101 |
+ 68.32% ::::::::::::::::::::::::::: | 69 / 101 |
+ 73.27% ::::::::::::::::::::::::::::: | 74 / 101 |
+ 80.20% :::::::::::::::::::::::::::::::: | 81 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 72.28% :::::::::::::::::::::::::::: | 73 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 77.23% :::::::::::::::::::::::::::::: | 78 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 73.27% ::::::::::::::::::::::::::::: | 74 / 101 |
+ 80.20% :::::::::::::::::::::::::::::::: | 81 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 72.28% :::::::::::::::::::::::::::: | 73 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 77.23% :::::::::::::::::::::::::::::: | 78 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 73.27% ::::::::::::::::::::::::::::: | 74 / 101 |
+ 80.20% :::::::::::::::::::::::::::::::: | 81 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 77.23% :::::::::::::::::::::::::::::: | 78 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 73.27% ::::::::::::::::::::::::::::: | 74 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 73.27% ::::::::::::::::::::::::::::: | 74 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/6 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 6/6 [00:00<00:00, 79.65it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/6 [00:00<?, ?it/s]
17%|█▋ | 1/6 [00:00<00:01, 2.57it/s]
33%|███▎ | 2/6 [00:00<00:00, 4.43it/s]
67%|██████▋ | 4/6 [00:00<00:00, 7.34it/s]
100%|██████████| 6/6 [00:00<00:00, 9.72it/s]
100%|██████████| 6/6 [00:00<00:00, 7.52it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/041/0.0/041_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/041/0.2/041_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/041/0.4/041_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/041/0.2/041_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/041/0.1/041_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/041/0.2/041_T3.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/042.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/042
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/042.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/042
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:07, 1.11s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:08, 1.49s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:04<00:08, 1.69s/it]
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read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:05, 1.93s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:11<00:04, 2.11s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:13<00:02, 2.22s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.61s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.17s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/38 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/38 [00:00<00:14, 2.53it/s]
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slice data vertically and clustering: 8%|▊ | 3/38 [00:02<00:25, 1.35it/s]
slice data vertically and clustering: 11%|█ | 4/38 [00:03<00:30, 1.13it/s]
slice data vertically and clustering: 13%|█▎ | 5/38 [00:04<00:33, 1.01s/it]
slice data vertically and clustering: 16%|█▌ | 6/38 [00:05<00:33, 1.05s/it]
slice data vertically and clustering: 18%|█▊ | 7/38 [00:06<00:31, 1.01s/it]
slice data vertically and clustering: 21%|██ | 8/38 [00:07<00:27, 1.10it/s]
slice data vertically and clustering: 24%|██▎ | 9/38 [00:07<00:23, 1.25it/s]
slice data vertically and clustering: 26%|██▋ | 10/38 [00:08<00:19, 1.44it/s]
slice data vertically and clustering: 29%|██▉ | 11/38 [00:08<00:16, 1.67it/s]
slice data vertically and clustering: 32%|███▏ | 12/38 [00:08<00:13, 1.96it/s]
slice data vertically and clustering: 34%|███▍ | 13/38 [00:09<00:10, 2.35it/s]
slice data vertically and clustering: 37%|███▋ | 14/38 [00:09<00:08, 2.81it/s]
slice data vertically and clustering: 39%|███▉ | 15/38 [00:09<00:06, 3.36it/s]
slice data vertically and clustering: 42%|████▏ | 16/38 [00:09<00:05, 4.03it/s]
slice data vertically and clustering: 47%|████▋ | 18/38 [00:09<00:03, 5.71it/s]
slice data vertically and clustering: 53%|█████▎ | 20/38 [00:09<00:02, 7.69it/s]
slice data vertically and clustering: 61%|██████ | 23/38 [00:09<00:01, 11.41it/s]
slice data vertically and clustering: 82%|████████▏ | 31/38 [00:10<00:00, 24.76it/s]
slice data vertically and clustering: 100%|██████████| 38/38 [00:10<00:00, 3.78it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 104 |
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+ 0.00% | 0 / 103 | MMMMMMMMMMMMMMM 0.96% | 1 / 104 |
+ 57.69% ::::::::::::::::::::::: | 60 / 104 |
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+ 0.97% | 1 / 103 | MMMMMMMMMMMMMMM 67.31% :::::::::::::::::::::::::: | 70 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
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+ 61.17% :::::::::::::::::::::::: | 63 / 103 |
+ 0.97% | 1 / 103 |
+ 0.97% | 1 / 103 |
+ 0.97% | 1 / 103 |
+ 0.97% | 1 / 103 |
+ 63.11% ::::::::::::::::::::::::: | 65 / 103 |
+ 0.97% | 1 / 103 |
+ 0.97% | 1 / 103 |
+ 0.97% | 1 / 103 | MMMMMMMMMMMMMMM 67.31% :::::::::::::::::::::::::: | 70 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 62.14% :::::::::::::::::::::::: | 64 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 63.11% ::::::::::::::::::::::::: | 65 / 103 |
+ 62.14% :::::::::::::::::::::::: | 64 / 103 |
+ 61.17% :::::::::::::::::::::::: | 63 / 103 |
+ 0.97% | 1 / 103 |
+ 75.73% :::::::::::::::::::::::::::::: | 78 / 103 |
+ 0.97% | 1 / 103 |
+ 0.97% | 1 / 103 |
+ 63.11% ::::::::::::::::::::::::: | 65 / 103 |
+ 0.97% | 1 / 103 |
+ 0.97% | 1 / 103 |
+ 0.97% | 1 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 62.14% :::::::::::::::::::::::: | 64 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 63.11% ::::::::::::::::::::::::: | 65 / 103 |
+ 62.14% :::::::::::::::::::::::: | 64 / 103 |
+ 61.17% :::::::::::::::::::::::: | 63 / 103 |
+ 66.99% :::::::::::::::::::::::::: | 69 / 103 |
+ 75.73% :::::::::::::::::::::::::::::: | 78 / 103 |
+ 0.97% | 1 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 63.11% ::::::::::::::::::::::::: | 65 / 103 |
+ 79.61% ::::::::::::::::::::::::::::::: | 82 / 103 |
+ 0.97% | 1 / 103 |
+ 84.47% ::::::::::::::::::::::::::::::::: | 87 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 63.11% ::::::::::::::::::::::::: | 65 / 103 |
+ 62.14% :::::::::::::::::::::::: | 64 / 103 |
+ 61.17% :::::::::::::::::::::::: | 63 / 103 |
+ 66.99% :::::::::::::::::::::::::: | 69 / 103 |
+ 75.73% :::::::::::::::::::::::::::::: | 78 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 63.11% ::::::::::::::::::::::::: | 65 / 103 |
+ 79.61% ::::::::::::::::::::::::::::::: | 82 / 103 |
+ 84.47% ::::::::::::::::::::::::::::::::: | 87 / 103 |
+ 84.47% ::::::::::::::::::::::::::::::::: | 87 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 62.14% :::::::::::::::::::::::: | 64 / 103 |
+ 61.17% :::::::::::::::::::::::: | 63 / 103 |
+ 66.99% :::::::::::::::::::::::::: | 69 / 103 |
+ 75.73% :::::::::::::::::::::::::::::: | 78 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 63.11% ::::::::::::::::::::::::: | 65 / 103 |
+ 79.61% ::::::::::::::::::::::::::::::: | 82 / 103 |
+ 84.47% ::::::::::::::::::::::::::::::::: | 87 / 103 |
+ 84.47% ::::::::::::::::::::::::::::::::: | 87 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 62.14% :::::::::::::::::::::::: | 64 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.99% :::::::::::::::::::::::::: | 69 / 103 |
+ 75.73% :::::::::::::::::::::::::::::: | 78 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 63.11% ::::::::::::::::::::::::: | 65 / 103 |
+ 79.61% ::::::::::::::::::::::::::::::: | 82 / 103 |
+ 84.47% ::::::::::::::::::::::::::::::::: | 87 / 103 |
+ 84.47% ::::::::::::::::::::::::::::::::: | 87 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 62.14% :::::::::::::::::::::::: | 64 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.99% :::::::::::::::::::::::::: | 69 / 103 |
+ 75.73% :::::::::::::::::::::::::::::: | 78 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 63.11% ::::::::::::::::::::::::: | 65 / 103 |
+ 79.61% ::::::::::::::::::::::::::::::: | 82 / 103 |
+ 84.47% ::::::::::::::::::::::::::::::::: | 87 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.99% :::::::::::::::::::::::::: | 69 / 103 |
+ 75.73% :::::::::::::::::::::::::::::: | 78 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 63.11% ::::::::::::::::::::::::: | 65 / 103 |
+ 79.61% ::::::::::::::::::::::::::::::: | 82 / 103 |
+ 84.47% ::::::::::::::::::::::::::::::::: | 87 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.99% :::::::::::::::::::::::::: | 69 / 103 |
+ 75.73% :::::::::::::::::::::::::::::: | 78 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 63.11% ::::::::::::::::::::::::: | 65 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 84.47% ::::::::::::::::::::::::::::::::: | 87 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.99% :::::::::::::::::::::::::: | 69 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 63.11% ::::::::::::::::::::::::: | 65 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 84.47% ::::::::::::::::::::::::::::::::: | 87 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.99% :::::::::::::::::::::::::: | 69 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 63.11% ::::::::::::::::::::::::: | 65 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.99% :::::::::::::::::::::::::: | 69 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 63.11% ::::::::::::::::::::::::: | 65 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.99% :::::::::::::::::::::::::: | 69 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.99% :::::::::::::::::::::::::: | 69 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 66.99% :::::::::::::::::::::::::: | 69 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 16.67% :::::: | 1 / 6 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 2 / 6 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 3 / 6 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/10 [00:00<?, ?it/s]
writing stems to file: 70%|███████ | 7/10 [00:00<00:00, 64.28it/s]
writing stems to file: 100%|██████████| 10/10 [00:00<00:00, 71.83it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:01, 4.81it/s]
20%|██ | 2/10 [00:00<00:01, 6.10it/s]
40%|████ | 4/10 [00:00<00:00, 8.96it/s]
60%|██████ | 6/10 [00:00<00:00, 11.70it/s]
80%|████████ | 8/10 [00:00<00:00, 13.02it/s]
100%|██████████| 10/10 [00:00<00:00, 14.10it/s]
100%|██████████| 10/10 [00:00<00:00, 11.57it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/042/0.2/042_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/042/0.3/042_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/042/0.1/042_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/042/0.2/042_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/042/0.2/042_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/042/0.1/042_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/042/0.1/042_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/042/0.1/042_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/042/0.0/042_T9.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/042/0.0/042_T8.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/043.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/043
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/043.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/043
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:09, 1.35s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:08, 1.38s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:03<00:06, 1.31s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:05<00:05, 1.45s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:07<00:05, 1.69s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:10<00:04, 2.01s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:14<00:02, 2.69s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.87s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.22s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/39 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/39 [00:00<00:17, 2.15it/s]
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slice data vertically and clustering: 8%|▊ | 3/39 [00:03<00:40, 1.13s/it]
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slice data vertically and clustering: 18%|█▊ | 7/39 [00:09<00:44, 1.38s/it]
slice data vertically and clustering: 21%|██ | 8/39 [00:10<00:37, 1.22s/it]
slice data vertically and clustering: 23%|██▎ | 9/39 [00:10<00:30, 1.01s/it]
slice data vertically and clustering: 26%|██▌ | 10/39 [00:11<00:24, 1.20it/s]
slice data vertically and clustering: 28%|██▊ | 11/39 [00:11<00:19, 1.47it/s]
slice data vertically and clustering: 31%|███ | 12/39 [00:11<00:14, 1.84it/s]
slice data vertically and clustering: 33%|███▎ | 13/39 [00:11<00:11, 2.29it/s]
slice data vertically and clustering: 36%|███▌ | 14/39 [00:12<00:08, 2.82it/s]
slice data vertically and clustering: 38%|███▊ | 15/39 [00:12<00:06, 3.46it/s]
slice data vertically and clustering: 41%|████ | 16/39 [00:12<00:05, 4.31it/s]
slice data vertically and clustering: 46%|████▌ | 18/39 [00:12<00:03, 6.18it/s]
slice data vertically and clustering: 51%|█████▏ | 20/39 [00:12<00:02, 8.36it/s]
slice data vertically and clustering: 59%|█████▉ | 23/39 [00:12<00:01, 12.39it/s]
slice data vertically and clustering: 77%|███████▋ | 30/39 [00:12<00:00, 24.38it/s]
slice data vertically and clustering: 100%|██████████| 39/39 [00:12<00:00, 3.04it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 92 |
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+MMMMMMMMMMMMMMM 1.09% | 1 / 92 |
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+ 0.00% | 0 / 91 | MMMMMMMMMMMMMMM 1.09% | 1 / 92 |
+ 30.43% :::::::::::: | 28 / 92 |
+ 1.09% | 1 / 92 |
+ 1.09% | 1 / 92 |
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+ 1.10% | 1 / 91 | MMMMMMMMMMMMMMM 68.48% ::::::::::::::::::::::::::: | 63 / 92 |
+ 30.43% :::::::::::: | 28 / 92 |
+ 67.39% :::::::::::::::::::::::::: | 62 / 92 |
+ 75.00% :::::::::::::::::::::::::::::: | 69 / 92 |
+ 1.09% | 1 / 92 |
+ 70.65% :::::::::::::::::::::::::::: | 65 / 92 |
+ 1.09% | 1 / 92 |
+ 69.57% ::::::::::::::::::::::::::: | 64 / 92 |
+ 77.17% :::::::::::::::::::::::::::::: | 71 / 92 |
+ 1.09% | 1 / 92 |
+ 1.09% | 1 / 92 |
+ 91.21% :::::::::::::::::::::::::::::::::::: | 83 / 91 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 78 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 87.91% ::::::::::::::::::::::::::::::::::: | 80 / 91 |
+ 1.10% | 1 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 30.43% :::::::::::: | 28 / 92 |
+ 67.39% :::::::::::::::::::::::::: | 62 / 92 |
+ 75.00% :::::::::::::::::::::::::::::: | 69 / 92 |
+ 1.09% | 1 / 92 |
+ 70.65% :::::::::::::::::::::::::::: | 65 / 92 |
+ 89.13% ::::::::::::::::::::::::::::::::::: | 82 / 92 |
+ 69.57% ::::::::::::::::::::::::::: | 64 / 92 |
+ 77.17% :::::::::::::::::::::::::::::: | 71 / 92 |
+ 1.09% | 1 / 92 |
+ 1.09% | 1 / 92 |
+ 91.21% :::::::::::::::::::::::::::::::::::: | 83 / 91 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 78 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 87.91% ::::::::::::::::::::::::::::::::::: | 80 / 91 |
+ 1.10% | 1 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 30.43% :::::::::::: | 28 / 92 |
+ 67.39% :::::::::::::::::::::::::: | 62 / 92 |
+ 75.00% :::::::::::::::::::::::::::::: | 69 / 92 |
+ 1.09% | 1 / 92 |
+ 70.65% :::::::::::::::::::::::::::: | 65 / 92 |
+ 89.13% ::::::::::::::::::::::::::::::::::: | 82 / 92 |
+ 69.57% ::::::::::::::::::::::::::: | 64 / 92 |
+ 77.17% :::::::::::::::::::::::::::::: | 71 / 92 |
+ 1.09% | 1 / 92 |
+ 1.09% | 1 / 92 |
+ 91.21% :::::::::::::::::::::::::::::::::::: | 83 / 91 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 78 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 1.10% | 1 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 30.43% :::::::::::: | 28 / 92 |
+ 67.39% :::::::::::::::::::::::::: | 62 / 92 |
+ 75.00% :::::::::::::::::::::::::::::: | 69 / 92 |
+ 1.09% | 1 / 92 |
+ 70.65% :::::::::::::::::::::::::::: | 65 / 92 |
+ 89.13% ::::::::::::::::::::::::::::::::::: | 82 / 92 |
+ 69.57% ::::::::::::::::::::::::::: | 64 / 92 |
+ 77.17% :::::::::::::::::::::::::::::: | 71 / 92 |
+ 1.09% | 1 / 92 |
+ 82.61% ::::::::::::::::::::::::::::::::: | 76 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 78 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 90.11% :::::::::::::::::::::::::::::::::::: | 82 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 30.43% :::::::::::: | 28 / 92 |
+ 67.39% :::::::::::::::::::::::::: | 62 / 92 |
+ 75.00% :::::::::::::::::::::::::::::: | 69 / 92 |
+ 1.09% | 1 / 92 |
+ 70.65% :::::::::::::::::::::::::::: | 65 / 92 |
+ 89.13% ::::::::::::::::::::::::::::::::::: | 82 / 92 |
+ 69.57% ::::::::::::::::::::::::::: | 64 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 92.39% :::::::::::::::::::::::::::::::::::: | 85 / 92 |
+ 82.61% ::::::::::::::::::::::::::::::::: | 76 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 78 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 90.11% :::::::::::::::::::::::::::::::::::: | 82 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 30.43% :::::::::::: | 28 / 92 |
+ 67.39% :::::::::::::::::::::::::: | 62 / 92 |
+ 75.00% :::::::::::::::::::::::::::::: | 69 / 92 |
+ 1.09% | 1 / 92 |
+ 70.65% :::::::::::::::::::::::::::: | 65 / 92 |
+ 89.13% ::::::::::::::::::::::::::::::::::: | 82 / 92 |
+ 69.57% ::::::::::::::::::::::::::: | 64 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 92.39% :::::::::::::::::::::::::::::::::::: | 85 / 92 |
+ 82.61% ::::::::::::::::::::::::::::::::: | 76 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 90.11% :::::::::::::::::::::::::::::::::::: | 82 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 30.43% :::::::::::: | 28 / 92 |
+ 67.39% :::::::::::::::::::::::::: | 62 / 92 |
+ 75.00% :::::::::::::::::::::::::::::: | 69 / 92 |
+ 90.22% :::::::::::::::::::::::::::::::::::: | 83 / 92 |
+ 70.65% :::::::::::::::::::::::::::: | 65 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 69.57% ::::::::::::::::::::::::::: | 64 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 92.39% :::::::::::::::::::::::::::::::::::: | 85 / 92 |
+ 82.61% ::::::::::::::::::::::::::::::::: | 76 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 90.11% :::::::::::::::::::::::::::::::::::: | 82 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 30.43% :::::::::::: | 28 / 92 |
+ 67.39% :::::::::::::::::::::::::: | 62 / 92 |
+ 75.00% :::::::::::::::::::::::::::::: | 69 / 92 |
+ 90.22% :::::::::::::::::::::::::::::::::::: | 83 / 92 |
+ 70.65% :::::::::::::::::::::::::::: | 65 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 69.57% ::::::::::::::::::::::::::: | 64 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 92.39% :::::::::::::::::::::::::::::::::::: | 85 / 92 |
+ 82.61% ::::::::::::::::::::::::::::::::: | 76 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 30.43% :::::::::::: | 28 / 92 |
+ 67.39% :::::::::::::::::::::::::: | 62 / 92 |
+ 75.00% :::::::::::::::::::::::::::::: | 69 / 92 |
+ 90.22% :::::::::::::::::::::::::::::::::::: | 83 / 92 |
+ 70.65% :::::::::::::::::::::::::::: | 65 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 92.39% :::::::::::::::::::::::::::::::::::: | 85 / 92 |
+ 82.61% ::::::::::::::::::::::::::::::::: | 76 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 30.43% :::::::::::: | 28 / 92 |
+ 67.39% :::::::::::::::::::::::::: | 62 / 92 |
+ 75.00% :::::::::::::::::::::::::::::: | 69 / 92 |
+ 90.22% :::::::::::::::::::::::::::::::::::: | 83 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 92.39% :::::::::::::::::::::::::::::::::::: | 85 / 92 |
+ 82.61% ::::::::::::::::::::::::::::::::: | 76 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 30.43% :::::::::::: | 28 / 92 |
+ 67.39% :::::::::::::::::::::::::: | 62 / 92 |
+ 75.00% :::::::::::::::::::::::::::::: | 69 / 92 |
+ 90.22% :::::::::::::::::::::::::::::::::::: | 83 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 82.61% ::::::::::::::::::::::::::::::::: | 76 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 30.43% :::::::::::: | 28 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 75.00% :::::::::::::::::::::::::::::: | 69 / 92 |
+ 90.22% :::::::::::::::::::::::::::::::::::: | 83 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 82.61% ::::::::::::::::::::::::::::::::: | 76 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 75.00% :::::::::::::::::::::::::::::: | 69 / 92 |
+ 90.22% :::::::::::::::::::::::::::::::::::: | 83 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 82.61% ::::::::::::::::::::::::::::::::: | 76 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 90.22% :::::::::::::::::::::::::::::::::::: | 83 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 82.61% ::::::::::::::::::::::::::::::::: | 76 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 90.22% :::::::::::::::::::::::::::::::::::: | 83 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/8 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 8/8 [00:00<00:00, 98.69it/s]
+adding leaves to stems, this may take a while...
+
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100%|██████████| 8/8 [00:00<00:00, 10.47it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/043/0.1/043_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/043/0.0/043_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/043/0.1/043_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/043/0.2/043_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/043/0.2/043_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/043/0.0/043_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/043/0.1/043_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/043/0.0/043_T6.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/044.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/044
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/044.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/044
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
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read in neighbouring tiles: 100%|██████████| 8/8 [00:16<00:00, 2.00s/it]
+
+----- skeletonisation started -----
+
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slice data vertically and clustering: 21%|██ | 8/38 [00:07<00:26, 1.11it/s]
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slice data vertically and clustering: 26%|██▋ | 10/38 [00:08<00:19, 1.45it/s]
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slice data vertically and clustering: 37%|███▋ | 14/38 [00:09<00:08, 2.86it/s]
slice data vertically and clustering: 39%|███▉ | 15/38 [00:09<00:06, 3.44it/s]
slice data vertically and clustering: 42%|████▏ | 16/38 [00:09<00:05, 4.15it/s]
slice data vertically and clustering: 47%|████▋ | 18/38 [00:09<00:03, 5.90it/s]
slice data vertically and clustering: 53%|█████▎ | 20/38 [00:09<00:02, 8.01it/s]
slice data vertically and clustering: 61%|██████ | 23/38 [00:09<00:01, 11.92it/s]
slice data vertically and clustering: 100%|██████████| 38/38 [00:09<00:00, 3.85it/s]fitting convex hulls to clusters
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+ 81.37% :::::::::::::::::::::::::::::::: | 83 / 102 |
+ 75.49% :::::::::::::::::::::::::::::: | 77 / 102 | MMMMMMMMMMMMMMM 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 76.70% :::::::::::::::::::::::::::::: | 79 / 103 |
+ 75.73% :::::::::::::::::::::::::::::: | 78 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 53.40% ::::::::::::::::::::: | 55 / 103 |
+ 69.90% ::::::::::::::::::::::::::: | 72 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 76.47% :::::::::::::::::::::::::::::: | 78 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 75.49% :::::::::::::::::::::::::::::: | 77 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 80.39% :::::::::::::::::::::::::::::::: | 82 / 102 |
+ 81.37% :::::::::::::::::::::::::::::::: | 83 / 102 |
+ 75.49% :::::::::::::::::::::::::::::: | 77 / 102 | MMMMMMMMMMMMMMM 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 76.70% :::::::::::::::::::::::::::::: | 79 / 103 |
+ 75.73% :::::::::::::::::::::::::::::: | 78 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 53.40% ::::::::::::::::::::: | 55 / 103 |
+ 69.90% ::::::::::::::::::::::::::: | 72 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 76.47% :::::::::::::::::::::::::::::: | 78 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 80.39% :::::::::::::::::::::::::::::::: | 82 / 102 |
+ 81.37% :::::::::::::::::::::::::::::::: | 83 / 102 |
+ 75.49% :::::::::::::::::::::::::::::: | 77 / 102 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 76.70% :::::::::::::::::::::::::::::: | 79 / 103 |
+ 75.73% :::::::::::::::::::::::::::::: | 78 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 53.40% ::::::::::::::::::::: | 55 / 103 |
+ 69.90% ::::::::::::::::::::::::::: | 72 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 76.47% :::::::::::::::::::::::::::::: | 78 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 80.39% :::::::::::::::::::::::::::::::: | 82 / 102 |
+ 81.37% :::::::::::::::::::::::::::::::: | 83 / 102 |
+ 75.49% :::::::::::::::::::::::::::::: | 77 / 102 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 76.70% :::::::::::::::::::::::::::::: | 79 / 103 |
+ 75.73% :::::::::::::::::::::::::::::: | 78 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 53.40% ::::::::::::::::::::: | 55 / 103 |
+ 69.90% ::::::::::::::::::::::::::: | 72 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 76.47% :::::::::::::::::::::::::::::: | 78 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 80.39% :::::::::::::::::::::::::::::::: | 82 / 102 |
+ 81.37% :::::::::::::::::::::::::::::::: | 83 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 76.70% :::::::::::::::::::::::::::::: | 79 / 103 |
+ 75.73% :::::::::::::::::::::::::::::: | 78 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 53.40% ::::::::::::::::::::: | 55 / 103 |
+ 69.90% ::::::::::::::::::::::::::: | 72 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 76.47% :::::::::::::::::::::::::::::: | 78 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 80.39% :::::::::::::::::::::::::::::::: | 82 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 76.70% :::::::::::::::::::::::::::::: | 79 / 103 |
+ 75.73% :::::::::::::::::::::::::::::: | 78 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 53.40% ::::::::::::::::::::: | 55 / 103 |
+ 69.90% ::::::::::::::::::::::::::: | 72 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 76.47% :::::::::::::::::::::::::::::: | 78 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 76.70% :::::::::::::::::::::::::::::: | 79 / 103 |
+ 75.73% :::::::::::::::::::::::::::::: | 78 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 53.40% ::::::::::::::::::::: | 55 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 76.47% :::::::::::::::::::::::::::::: | 78 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 76.70% :::::::::::::::::::::::::::::: | 79 / 103 |
+ 75.73% :::::::::::::::::::::::::::::: | 78 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 76.47% :::::::::::::::::::::::::::::: | 78 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 76.70% :::::::::::::::::::::::::::::: | 79 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 66.02% :::::::::::::::::::::::::: | 68 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 76.47% :::::::::::::::::::::::::::::: | 78 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 76.70% :::::::::::::::::::::::::::::: | 79 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 76.47% :::::::::::::::::::::::::::::: | 78 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 76.47% :::::::::::::::::::::::::::::: | 78 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 77.67% ::::::::::::::::::::::::::::::: | 80 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/8 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 8/8 [00:00<00:00, 96.37it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/8 [00:00<?, ?it/s]
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25%|██▌ | 2/8 [00:00<00:01, 4.67it/s]
50%|█████ | 4/8 [00:00<00:00, 7.19it/s]
75%|███████▌ | 6/8 [00:00<00:00, 8.51it/s]
100%|██████████| 8/8 [00:00<00:00, 8.98it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/044/0.2/044_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/044/0.2/044_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/044/0.1/044_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/044/0.0/044_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/044/0.1/044_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/044/0.1/044_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/044/0.0/044_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/044/0.0/044_T7.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/045.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/045
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/045.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/045
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:10, 1.47s/it]
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read in neighbouring tiles: 88%|████████▊ | 7/8 [00:15<00:02, 2.59s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 2.73s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 2.33s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/34 [00:00<?, ?it/s]
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slice data vertically and clustering: 21%|██ | 7/34 [00:07<00:29, 1.11s/it]
slice data vertically and clustering: 24%|██▎ | 8/34 [00:07<00:25, 1.03it/s]
slice data vertically and clustering: 26%|██▋ | 9/34 [00:08<00:20, 1.20it/s]
slice data vertically and clustering: 29%|██▉ | 10/34 [00:08<00:17, 1.41it/s]
slice data vertically and clustering: 32%|███▏ | 11/34 [00:09<00:13, 1.67it/s]
slice data vertically and clustering: 35%|███▌ | 12/34 [00:09<00:10, 2.02it/s]
slice data vertically and clustering: 38%|███▊ | 13/34 [00:09<00:08, 2.43it/s]
slice data vertically and clustering: 41%|████ | 14/34 [00:09<00:06, 2.95it/s]
slice data vertically and clustering: 44%|████▍ | 15/34 [00:09<00:05, 3.58it/s]
slice data vertically and clustering: 47%|████▋ | 16/34 [00:09<00:04, 4.41it/s]
slice data vertically and clustering: 53%|█████▎ | 18/34 [00:10<00:02, 6.32it/s]
slice data vertically and clustering: 59%|█████▉ | 20/34 [00:10<00:01, 8.53it/s]
slice data vertically and clustering: 71%|███████ | 24/34 [00:10<00:00, 14.18it/s]
slice data vertically and clustering: 100%|██████████| 34/34 [00:10<00:00, 3.26it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 91 |
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+ 1.11% | 1 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 1.10% | 1 / 91 |
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+ 1.10% | 1 / 91 |
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+ 96.67% :::::::::::::::::::::::::::::::::::::: | 87 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 87.91% ::::::::::::::::::::::::::::::::::: | 80 / 91 |
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+ 78.89% ::::::::::::::::::::::::::::::: | 71 / 90 |
+ 87.78% ::::::::::::::::::::::::::::::::::: | 79 / 90 |
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+ 96.67% :::::::::::::::::::::::::::::::::::::: | 87 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 87.91% ::::::::::::::::::::::::::::::::::: | 80 / 91 |
+ 84.62% ::::::::::::::::::::::::::::::::: | 77 / 91 |
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+ 78.89% ::::::::::::::::::::::::::::::: | 71 / 90 |
+ 87.78% ::::::::::::::::::::::::::::::::::: | 79 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 87.91% ::::::::::::::::::::::::::::::::::: | 80 / 91 |
+ 84.62% ::::::::::::::::::::::::::::::::: | 77 / 91 |
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+ 63.74% ::::::::::::::::::::::::: | 58 / 91 |
+ 78.89% ::::::::::::::::::::::::::::::: | 71 / 90 |
+ 87.78% ::::::::::::::::::::::::::::::::::: | 79 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
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+ 77.78% ::::::::::::::::::::::::::::::: | 70 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 90.00% :::::::::::::::::::::::::::::::::::: | 81 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 93.33% ::::::::::::::::::::::::::::::::::::: | 84 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 87.91% ::::::::::::::::::::::::::::::::::: | 80 / 91 |
+ 84.62% ::::::::::::::::::::::::::::::::: | 77 / 91 |
+ 92.31% :::::::::::::::::::::::::::::::::::: | 84 / 91 |
+ 63.74% ::::::::::::::::::::::::: | 58 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 87.78% ::::::::::::::::::::::::::::::::::: | 79 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 87.78% ::::::::::::::::::::::::::::::::::: | 79 / 90 |
+ 77.78% ::::::::::::::::::::::::::::::: | 70 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 90.00% :::::::::::::::::::::::::::::::::::: | 81 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 93.33% ::::::::::::::::::::::::::::::::::::: | 84 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 87.91% ::::::::::::::::::::::::::::::::::: | 80 / 91 |
+ 84.62% ::::::::::::::::::::::::::::::::: | 77 / 91 |
+ 92.31% :::::::::::::::::::::::::::::::::::: | 84 / 91 |
+ 63.74% ::::::::::::::::::::::::: | 58 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 87.78% ::::::::::::::::::::::::::::::::::: | 79 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 87.78% ::::::::::::::::::::::::::::::::::: | 79 / 90 |
+ 77.78% ::::::::::::::::::::::::::::::: | 70 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 90.00% :::::::::::::::::::::::::::::::::::: | 81 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 93.33% ::::::::::::::::::::::::::::::::::::: | 84 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 87.91% ::::::::::::::::::::::::::::::::::: | 80 / 91 |
+ 84.62% ::::::::::::::::::::::::::::::::: | 77 / 91 |
+ 92.31% :::::::::::::::::::::::::::::::::::: | 84 / 91 |
+ 63.74% ::::::::::::::::::::::::: | 58 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 87.78% ::::::::::::::::::::::::::::::::::: | 79 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 87.78% ::::::::::::::::::::::::::::::::::: | 79 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 90.00% :::::::::::::::::::::::::::::::::::: | 81 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 93.33% ::::::::::::::::::::::::::::::::::::: | 84 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 87.91% ::::::::::::::::::::::::::::::::::: | 80 / 91 |
+ 84.62% ::::::::::::::::::::::::::::::::: | 77 / 91 |
+ 92.31% :::::::::::::::::::::::::::::::::::: | 84 / 91 |
+ 63.74% ::::::::::::::::::::::::: | 58 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 87.78% ::::::::::::::::::::::::::::::::::: | 79 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 90.00% :::::::::::::::::::::::::::::::::::: | 81 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 93.33% ::::::::::::::::::::::::::::::::::::: | 84 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 87.91% ::::::::::::::::::::::::::::::::::: | 80 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 92.31% :::::::::::::::::::::::::::::::::::: | 84 / 91 |
+ 63.74% ::::::::::::::::::::::::: | 58 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 87.78% ::::::::::::::::::::::::::::::::::: | 79 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 90.00% :::::::::::::::::::::::::::::::::::: | 81 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 93.33% ::::::::::::::::::::::::::::::::::::: | 84 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 87.91% ::::::::::::::::::::::::::::::::::: | 80 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 92.31% :::::::::::::::::::::::::::::::::::: | 84 / 91 |
+ 63.74% ::::::::::::::::::::::::: | 58 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 90.00% :::::::::::::::::::::::::::::::::::: | 81 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 93.33% ::::::::::::::::::::::::::::::::::::: | 84 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 87.91% ::::::::::::::::::::::::::::::::::: | 80 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 92.31% :::::::::::::::::::::::::::::::::::: | 84 / 91 |
+ 63.74% ::::::::::::::::::::::::: | 58 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 93.33% ::::::::::::::::::::::::::::::::::::: | 84 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 92.31% :::::::::::::::::::::::::::::::::::: | 84 / 91 |
+ 63.74% ::::::::::::::::::::::::: | 58 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 93.33% ::::::::::::::::::::::::::::::::::::: | 84 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 92.31% :::::::::::::::::::::::::::::::::::: | 84 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 93.33% ::::::::::::::::::::::::::::::::::::: | 84 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 92.31% :::::::::::::::::::::::::::::::::::: | 84 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/6 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 6/6 [00:00<00:00, 97.61it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/6 [00:00<?, ?it/s]
17%|█▋ | 1/6 [00:00<00:01, 2.99it/s]
67%|██████▋ | 4/6 [00:00<00:00, 9.75it/s]
100%|██████████| 6/6 [00:00<00:00, 11.69it/s]
100%|██████████| 6/6 [00:00<00:00, 9.88it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/045/0.3/045_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/045/0.2/045_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/045/0.0/045_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/045/0.3/045_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/045/0.1/045_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/045/0.1/045_T4.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/046.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/046
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/046.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/046
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:06, 1.04it/s]
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read in neighbouring tiles: 100%|██████████| 8/8 [00:21<00:00, 2.66s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/35 [00:00<?, ?it/s]
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slice data vertically and clustering: 20%|██ | 7/35 [00:08<00:38, 1.36s/it]
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slice data vertically and clustering: 26%|██▌ | 9/35 [00:10<00:27, 1.06s/it]
slice data vertically and clustering: 29%|██▊ | 10/35 [00:11<00:22, 1.11it/s]
slice data vertically and clustering: 31%|███▏ | 11/35 [00:11<00:18, 1.32it/s]
slice data vertically and clustering: 34%|███▍ | 12/35 [00:11<00:14, 1.57it/s]
slice data vertically and clustering: 37%|███▋ | 13/35 [00:12<00:11, 1.87it/s]
slice data vertically and clustering: 40%|████ | 14/35 [00:12<00:09, 2.29it/s]
slice data vertically and clustering: 43%|████▎ | 15/35 [00:12<00:07, 2.80it/s]
slice data vertically and clustering: 46%|████▌ | 16/35 [00:12<00:05, 3.40it/s]
slice data vertically and clustering: 49%|████▊ | 17/35 [00:12<00:04, 4.13it/s]
slice data vertically and clustering: 54%|█████▍ | 19/35 [00:12<00:02, 5.99it/s]
slice data vertically and clustering: 60%|██████ | 21/35 [00:13<00:01, 8.10it/s]
slice data vertically and clustering: 69%|██████▊ | 24/35 [00:13<00:00, 12.06it/s]
slice data vertically and clustering: 91%|█████████▏| 32/35 [00:13<00:00, 26.03it/s]
slice data vertically and clustering: 100%|██████████| 35/35 [00:13<00:00, 2.63it/s]fitting convex hulls to clusters
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+ 75.96% :::::::::::::::::::::::::::::: | 79 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 59.05% ::::::::::::::::::::::: | 62 / 105 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 67.31% :::::::::::::::::::::::::: | 70 / 104 |
+ 75.96% :::::::::::::::::::::::::::::: | 79 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 75.96% :::::::::::::::::::::::::::::: | 79 / 104 |
+ 74.04% ::::::::::::::::::::::::::::: | 77 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 75.96% :::::::::::::::::::::::::::::: | 79 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 59.62% ::::::::::::::::::::::: | 62 / 104 |
+ 59.62% ::::::::::::::::::::::: | 62 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 67.31% :::::::::::::::::::::::::: | 70 / 104 |
+ 75.96% :::::::::::::::::::::::::::::: | 79 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 75.96% :::::::::::::::::::::::::::::: | 79 / 104 |
+ 74.04% ::::::::::::::::::::::::::::: | 77 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 59.62% ::::::::::::::::::::::: | 62 / 104 |
+ 59.62% ::::::::::::::::::::::: | 62 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 67.31% :::::::::::::::::::::::::: | 70 / 104 |
+ 75.96% :::::::::::::::::::::::::::::: | 79 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 74.04% ::::::::::::::::::::::::::::: | 77 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 59.62% ::::::::::::::::::::::: | 62 / 104 |
+ 59.62% ::::::::::::::::::::::: | 62 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 67.31% :::::::::::::::::::::::::: | 70 / 104 |
+ 75.96% :::::::::::::::::::::::::::::: | 79 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 59.62% ::::::::::::::::::::::: | 62 / 104 |
+ 59.62% ::::::::::::::::::::::: | 62 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 75.96% :::::::::::::::::::::::::::::: | 79 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 59.62% ::::::::::::::::::::::: | 62 / 104 |
+ 59.62% ::::::::::::::::::::::: | 62 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 59.62% ::::::::::::::::::::::: | 62 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/11 [00:00<?, ?it/s]
writing stems to file: 64%|██████▎ | 7/11 [00:00<00:00, 65.19it/s]
writing stems to file: 100%|██████████| 11/11 [00:00<00:00, 77.01it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/11 [00:00<?, ?it/s]
9%|▉ | 1/11 [00:00<00:02, 4.50it/s]
18%|█▊ | 2/11 [00:00<00:01, 6.13it/s]
36%|███▋ | 4/11 [00:00<00:00, 10.09it/s]
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100%|██████████| 11/11 [00:01<00:00, 9.56it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/046/0.2/046_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/046/0.6/046_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/046/0.2/046_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/046/0.0/046_T10.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/046/0.1/046_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/046/0.0/046_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/046/0.1/046_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/046/0.2/046_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/046/0.0/046_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/046/0.0/046_T9.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/046/0.0/046_T6.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/047.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/047
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/047.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/047
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:02<00:16, 2.33s/it]
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read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.25s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/39 [00:00<?, ?it/s]
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slice data vertically and clustering: 21%|██ | 8/39 [00:09<00:34, 1.12s/it]
slice data vertically and clustering: 23%|██▎ | 9/39 [00:10<00:27, 1.08it/s]
slice data vertically and clustering: 26%|██▌ | 10/39 [00:10<00:21, 1.34it/s]
slice data vertically and clustering: 28%|██▊ | 11/39 [00:10<00:16, 1.69it/s]
slice data vertically and clustering: 31%|███ | 12/39 [00:10<00:12, 2.12it/s]
slice data vertically and clustering: 33%|███▎ | 13/39 [00:10<00:09, 2.65it/s]
slice data vertically and clustering: 36%|███▌ | 14/39 [00:11<00:07, 3.28it/s]
slice data vertically and clustering: 38%|███▊ | 15/39 [00:11<00:05, 4.09it/s]
slice data vertically and clustering: 44%|████▎ | 17/39 [00:11<00:03, 5.90it/s]
slice data vertically and clustering: 49%|████▊ | 19/39 [00:11<00:02, 7.96it/s]
slice data vertically and clustering: 56%|█████▋ | 22/39 [00:11<00:01, 11.76it/s]
slice data vertically and clustering: 72%|███████▏ | 28/39 [00:11<00:00, 21.57it/s]
slice data vertically and clustering: 100%|██████████| 39/39 [00:11<00:00, 3.32it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 89 |
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+ 1.14% | 1 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 83.15% ::::::::::::::::::::::::::::::::: | 74 / 89 |
+ 69.66% ::::::::::::::::::::::::::: | 62 / 89 |
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+ 79.55% ::::::::::::::::::::::::::::::: | 70 / 88 |
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+ 1.14% | 1 / 88 |
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+ 85.23% :::::::::::::::::::::::::::::::::: | 75 / 88 |
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+ 1.14% | 1 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 83.15% ::::::::::::::::::::::::::::::::: | 74 / 89 |
+ 69.66% ::::::::::::::::::::::::::: | 62 / 89 |
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+ 79.55% ::::::::::::::::::::::::::::::: | 70 / 88 |
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+ 85.23% :::::::::::::::::::::::::::::::::: | 75 / 88 |
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+ 1.14% | 1 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 83.15% ::::::::::::::::::::::::::::::::: | 74 / 89 |
+ 69.66% ::::::::::::::::::::::::::: | 62 / 89 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
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+ 85.23% :::::::::::::::::::::::::::::::::: | 75 / 88 |
+ 69.32% ::::::::::::::::::::::::::: | 61 / 88 |
+ 88.64% ::::::::::::::::::::::::::::::::::: | 78 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 83.15% ::::::::::::::::::::::::::::::::: | 74 / 89 |
+ 69.66% ::::::::::::::::::::::::::: | 62 / 89 |
+ 88.76% ::::::::::::::::::::::::::::::::::: | 79 / 89 |
+ 43.18% ::::::::::::::::: | 38 / 88 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
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+ 89.77% ::::::::::::::::::::::::::::::::::: | 79 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
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+ 85.23% :::::::::::::::::::::::::::::::::: | 75 / 88 |
+ 69.32% ::::::::::::::::::::::::::: | 61 / 88 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
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+ 85.23% :::::::::::::::::::::::::::::::::: | 75 / 88 |
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+ 43.18% ::::::::::::::::: | 38 / 88 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 85.23% :::::::::::::::::::::::::::::::::: | 75 / 88 |
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+ 85.23% :::::::::::::::::::::::::::::::::: | 75 / 88 |
+ 69.32% ::::::::::::::::::::::::::: | 61 / 88 |
+ 88.64% ::::::::::::::::::::::::::::::::::: | 78 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
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+ 69.66% ::::::::::::::::::::::::::: | 62 / 89 |
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+ 43.18% ::::::::::::::::: | 38 / 88 |
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+ 43.18% ::::::::::::::::: | 38 / 88 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 69.32% ::::::::::::::::::::::::::: | 61 / 88 |
+ 88.64% ::::::::::::::::::::::::::::::::::: | 78 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 69.66% ::::::::::::::::::::::::::: | 62 / 89 |
+ 88.76% ::::::::::::::::::::::::::::::::::: | 79 / 89 |
+ 43.18% ::::::::::::::::: | 38 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 53.41% ::::::::::::::::::::: | 47 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.91% :::::::::::::::::::::::::::::::::::: | 80 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 69.32% ::::::::::::::::::::::::::: | 61 / 88 |
+ 88.64% ::::::::::::::::::::::::::::::::::: | 78 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 69.66% ::::::::::::::::::::::::::: | 62 / 89 |
+ 88.76% ::::::::::::::::::::::::::::::::::: | 79 / 89 |
+ 43.18% ::::::::::::::::: | 38 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 53.41% ::::::::::::::::::::: | 47 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.91% :::::::::::::::::::::::::::::::::::: | 80 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 69.32% ::::::::::::::::::::::::::: | 61 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 88.76% ::::::::::::::::::::::::::::::::::: | 79 / 89 |
+ 43.18% ::::::::::::::::: | 38 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 53.41% ::::::::::::::::::::: | 47 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.91% :::::::::::::::::::::::::::::::::::: | 80 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 69.32% ::::::::::::::::::::::::::: | 61 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 88.76% ::::::::::::::::::::::::::::::::::: | 79 / 89 |
+ 43.18% ::::::::::::::::: | 38 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.91% :::::::::::::::::::::::::::::::::::: | 80 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 69.32% ::::::::::::::::::::::::::: | 61 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 88.76% ::::::::::::::::::::::::::::::::::: | 79 / 89 |
+ 43.18% ::::::::::::::::: | 38 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 90.91% :::::::::::::::::::::::::::::::::::: | 80 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 88.76% ::::::::::::::::::::::::::::::::::: | 79 / 89 |
+ 43.18% ::::::::::::::::: | 38 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 43.18% ::::::::::::::::: | 38 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/6 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 6/6 [00:00<00:00, 95.80it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/6 [00:00<?, ?it/s]
17%|█▋ | 1/6 [00:00<00:01, 2.59it/s]
50%|█████ | 3/6 [00:00<00:00, 6.64it/s]
100%|██████████| 6/6 [00:00<00:00, 10.65it/s]
100%|██████████| 6/6 [00:00<00:00, 8.60it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/047/0.2/047_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/047/0.2/047_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/047/0.2/047_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/047/0.0/047_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/047/0.0/047_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/047/0.0/047_T4.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/062.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/062
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/062.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/062
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:06, 1.15it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:03<00:12, 2.02s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:05<00:09, 1.87s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:07<00:07, 1.78s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:06, 2.13s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:12<00:04, 2.49s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:16<00:02, 2.69s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 2.74s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 2.37s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/36 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/36 [00:00<00:16, 2.14it/s]
slice data vertically and clustering: 6%|▌ | 2/36 [00:01<00:22, 1.53it/s]
slice data vertically and clustering: 8%|▊ | 3/36 [00:02<00:29, 1.13it/s]
slice data vertically and clustering: 11%|█ | 4/36 [00:03<00:33, 1.05s/it]
slice data vertically and clustering: 14%|█▍ | 5/36 [00:05<00:38, 1.23s/it]
slice data vertically and clustering: 17%|█▋ | 6/36 [00:06<00:37, 1.26s/it]
slice data vertically and clustering: 19%|█▉ | 7/36 [00:07<00:34, 1.20s/it]
slice data vertically and clustering: 22%|██▏ | 8/36 [00:08<00:29, 1.04s/it]
slice data vertically and clustering: 25%|██▌ | 9/36 [00:08<00:24, 1.12it/s]
slice data vertically and clustering: 28%|██▊ | 10/36 [00:09<00:19, 1.32it/s]
slice data vertically and clustering: 31%|███ | 11/36 [00:09<00:15, 1.58it/s]
slice data vertically and clustering: 33%|███▎ | 12/36 [00:10<00:12, 1.87it/s]
slice data vertically and clustering: 36%|███▌ | 13/36 [00:10<00:10, 2.29it/s]
slice data vertically and clustering: 39%|███▉ | 14/36 [00:10<00:07, 2.82it/s]
slice data vertically and clustering: 42%|████▏ | 15/36 [00:10<00:06, 3.47it/s]
slice data vertically and clustering: 47%|████▋ | 17/36 [00:10<00:03, 5.17it/s]
slice data vertically and clustering: 53%|█████▎ | 19/36 [00:10<00:02, 7.15it/s]
slice data vertically and clustering: 61%|██████ | 22/36 [00:10<00:01, 10.88it/s]
slice data vertically and clustering: 81%|████████ | 29/36 [00:11<00:00, 22.04it/s]
slice data vertically and clustering: 100%|██████████| 36/36 [00:11<00:00, 3.25it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 93 |
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+ 70.97% :::::::::::::::::::::::::::: | 66 / 93 |
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+ 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
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+ 1.09% | 1 / 92 |
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+ 1.09% | 1 / 92 |
+ 86.96% :::::::::::::::::::::::::::::::::: | 80 / 92 | MMMMMMMMMMMMMMM 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
+ 70.97% :::::::::::::::::::::::::::: | 66 / 93 |
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+ 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
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+ 1.09% | 1 / 92 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 89.13% ::::::::::::::::::::::::::::::::::: | 82 / 92 |
+ 86.96% :::::::::::::::::::::::::::::::::: | 80 / 92 | MMMMMMMMMMMMMMM 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
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+ 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
+ 81.72% :::::::::::::::::::::::::::::::: | 76 / 93 |
+ 81.72% :::::::::::::::::::::::::::::::: | 76 / 93 |
+ 69.89% ::::::::::::::::::::::::::: | 65 / 93 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 75.00% :::::::::::::::::::::::::::::: | 69 / 92 |
+ 1.09% | 1 / 92 |
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+ 85.87% :::::::::::::::::::::::::::::::::: | 79 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 89.13% ::::::::::::::::::::::::::::::::::: | 82 / 92 |
+ 86.96% :::::::::::::::::::::::::::::::::: | 80 / 92 | MMMMMMMMMMMMMMM 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
+ 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
+ 81.72% :::::::::::::::::::::::::::::::: | 76 / 93 |
+ 81.72% :::::::::::::::::::::::::::::::: | 76 / 93 |
+ 69.89% ::::::::::::::::::::::::::: | 65 / 93 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 75.00% :::::::::::::::::::::::::::::: | 69 / 92 |
+ 1.09% | 1 / 92 |
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+ 85.87% :::::::::::::::::::::::::::::::::: | 79 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 89.13% ::::::::::::::::::::::::::::::::::: | 82 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
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+ 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
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+ 81.72% :::::::::::::::::::::::::::::::: | 76 / 93 |
+ 69.89% ::::::::::::::::::::::::::: | 65 / 93 |
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+ 67.39% :::::::::::::::::::::::::: | 62 / 92 |
+ 85.87% :::::::::::::::::::::::::::::::::: | 79 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
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+ 69.89% ::::::::::::::::::::::::::: | 65 / 93 |
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+ 85.87% :::::::::::::::::::::::::::::::::: | 79 / 92 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
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+ 69.89% ::::::::::::::::::::::::::: | 65 / 93 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 69.89% ::::::::::::::::::::::::::: | 65 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 93.48% ::::::::::::::::::::::::::::::::::::: | 86 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 69.89% ::::::::::::::::::::::::::: | 65 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/8 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 8/8 [00:00<00:00, 79.33it/s]
writing stems to file: 100%|██████████| 8/8 [00:00<00:00, 79.17it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/8 [00:00<?, ?it/s]
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38%|███▊ | 3/8 [00:00<00:00, 7.16it/s]
75%|███████▌ | 6/8 [00:00<00:00, 11.57it/s]
100%|██████████| 8/8 [00:00<00:00, 10.92it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/062/0.3/062_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/062/0.3/062_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/062/0.1/062_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/062/0.1/062_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/062/0.0/062_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/062/0.1/062_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/062/0.3/062_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/062/0.1/062_T3.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/063.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/063
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/063.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/063
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:08, 1.18s/it]
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read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 2.54s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/36 [00:00<?, ?it/s]
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slice data vertically and clustering: 42%|████▏ | 15/36 [00:11<00:06, 3.19it/s]
slice data vertically and clustering: 44%|████▍ | 16/36 [00:11<00:05, 3.91it/s]
slice data vertically and clustering: 50%|█████ | 18/36 [00:11<00:03, 5.77it/s]
slice data vertically and clustering: 56%|█████▌ | 20/36 [00:11<00:02, 7.88it/s]
slice data vertically and clustering: 64%|██████▍ | 23/36 [00:11<00:01, 11.83it/s]
slice data vertically and clustering: 83%|████████▎ | 30/36 [00:11<00:00, 23.78it/s]
slice data vertically and clustering: 100%|██████████| 36/36 [00:11<00:00, 3.03it/s]fitting convex hulls to clusters
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 80.61% :::::::::::::::::::::::::::::::: | 79 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 74.49% ::::::::::::::::::::::::::::: | 73 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 80.61% :::::::::::::::::::::::::::::::: | 79 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/13 [00:00<?, ?it/s]
writing stems to file: 46%|████▌ | 6/13 [00:00<00:00, 55.93it/s]
writing stems to file: 100%|██████████| 13/13 [00:00<00:00, 74.57it/s]
+adding leaves to stems, this may take a while...
+
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31%|███ | 4/13 [00:00<00:01, 6.20it/s]
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62%|██████▏ | 8/13 [00:01<00:00, 9.27it/s]
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100%|██████████| 13/13 [00:01<00:00, 8.25it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/063/0.8/063_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/063/0.3/063_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/063/0.1/063_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/063/0.2/063_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/063/0.0/063_T10.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/063/0.2/063_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/063/0.3/063_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/063/0.1/063_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/063/0.1/063_T9.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/063/0.3/063_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/063/0.0/063_T12.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/063/0.1/063_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/063/0.0/063_T11.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/070.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/070
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/070.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/070
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:08, 1.19s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:07, 1.29s/it]
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read in neighbouring tiles: 62%|██████▎ | 5/8 [00:07<00:04, 1.63s/it]
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read in neighbouring tiles: 100%|██████████| 8/8 [00:16<00:00, 2.47s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:16<00:00, 2.01s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/38 [00:00<?, ?it/s]
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slice data vertically and clustering: 21%|██ | 8/38 [00:06<00:26, 1.15it/s]
slice data vertically and clustering: 24%|██▎ | 9/38 [00:07<00:21, 1.33it/s]
slice data vertically and clustering: 26%|██▋ | 10/38 [00:07<00:18, 1.53it/s]
slice data vertically and clustering: 29%|██▉ | 11/38 [00:08<00:15, 1.80it/s]
slice data vertically and clustering: 32%|███▏ | 12/38 [00:08<00:12, 2.17it/s]
slice data vertically and clustering: 34%|███▍ | 13/38 [00:08<00:09, 2.61it/s]
slice data vertically and clustering: 37%|███▋ | 14/38 [00:08<00:07, 3.12it/s]
slice data vertically and clustering: 39%|███▉ | 15/38 [00:08<00:06, 3.75it/s]
slice data vertically and clustering: 42%|████▏ | 16/38 [00:08<00:04, 4.60it/s]
slice data vertically and clustering: 47%|████▋ | 18/38 [00:09<00:03, 6.56it/s]
slice data vertically and clustering: 53%|█████▎ | 20/38 [00:09<00:02, 8.94it/s]
slice data vertically and clustering: 63%|██████▎ | 24/38 [00:09<00:00, 14.68it/s]
slice data vertically and clustering: 100%|██████████| 38/38 [00:09<00:00, 4.05it/s]fitting convex hulls to clusters
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 60.87% :::::::::::::::::::::::: | 56 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/6 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 6/6 [00:00<00:00, 115.72it/s]
+adding leaves to stems, this may take a while...
+
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+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/070/0.2/070_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/070/0.0/070_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/070/0.0/070_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/070/0.0/070_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/070/0.0/070_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/070/0.0/070_T4.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/071.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/071
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/071.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/071
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
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read in neighbouring tiles: 100%|██████████| 8/8 [00:16<00:00, 2.02s/it]
+
+----- skeletonisation started -----
+
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slice data vertically and clustering: 61%|██████ | 23/38 [00:10<00:01, 12.10it/s]
slice data vertically and clustering: 100%|██████████| 38/38 [00:10<00:00, 3.75it/s]fitting convex hulls to clusters
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
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+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
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+ 0.00% | 0 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
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+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
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+ 25.00% :::::::::: | 1 / 4 |
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+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/2 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 2/2 [00:00<00:00, 106.21it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/2 [00:00<?, ?it/s]
50%|█████ | 1/2 [00:00<00:00, 2.83it/s]
100%|██████████| 2/2 [00:00<00:00, 5.02it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/071/0.1/071_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/071/0.1/071_T1.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/074.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/074
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/074.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/074
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:04, 1.74it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:01<00:05, 1.14it/s]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:04<00:09, 1.86s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:07<00:08, 2.24s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:10<00:07, 2.38s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:13<00:05, 2.55s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:16<00:02, 2.75s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 3.13s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 2.51s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/36 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/36 [00:00<00:16, 2.16it/s]
slice data vertically and clustering: 6%|▌ | 2/36 [00:01<00:21, 1.57it/s]
slice data vertically and clustering: 8%|▊ | 3/36 [00:02<00:28, 1.15it/s]
slice data vertically and clustering: 11%|█ | 4/36 [00:03<00:33, 1.05s/it]
slice data vertically and clustering: 14%|█▍ | 5/36 [00:05<00:37, 1.22s/it]
slice data vertically and clustering: 17%|█▋ | 6/36 [00:06<00:37, 1.24s/it]
slice data vertically and clustering: 19%|█▉ | 7/36 [00:07<00:34, 1.18s/it]
slice data vertically and clustering: 22%|██▏ | 8/36 [00:08<00:28, 1.03s/it]
slice data vertically and clustering: 25%|██▌ | 9/36 [00:08<00:23, 1.14it/s]
slice data vertically and clustering: 28%|██▊ | 10/36 [00:09<00:19, 1.36it/s]
slice data vertically and clustering: 31%|███ | 11/36 [00:09<00:15, 1.63it/s]
slice data vertically and clustering: 33%|███▎ | 12/36 [00:09<00:12, 1.99it/s]
slice data vertically and clustering: 36%|███▌ | 13/36 [00:09<00:09, 2.44it/s]
slice data vertically and clustering: 39%|███▉ | 14/36 [00:10<00:07, 3.02it/s]
slice data vertically and clustering: 42%|████▏ | 15/36 [00:10<00:05, 3.81it/s]
slice data vertically and clustering: 47%|████▋ | 17/36 [00:10<00:03, 5.71it/s]
slice data vertically and clustering: 56%|█████▌ | 20/36 [00:10<00:01, 9.06it/s]
slice data vertically and clustering: 69%|██████▉ | 25/36 [00:10<00:00, 15.85it/s]
slice data vertically and clustering: 100%|██████████| 36/36 [00:10<00:00, 3.36it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 84 |
+ 0.00% | 0 / 84 |
+ 0.00% | 0 / 84 |
+ 0.00% | 0 / 84 |
+ 0.00% | 0 / 84 |
+ 0.00% | 0 / 84 |
+ 0.00% | 0 / 84 |
+ 0.00% | 0 / 83 |
+ 0.00% | 0 / 83 |
+ 0.00% | 0 / 83 |
+ 0.00% | 0 / 83 |
+ 0.00% | 0 / 83 |
+ 0.00% | 0 / 83 |
+ 0.00% | 0 / 83 |
+ 0.00% | 0 / 83 |
+ 0.00% | 0 / 83 |
+MMMMMMMMMMMMMMM 0.00% | 0 / 84 |
+ 0.00% | 0 / 84 |
+ 1.19% | 1 / 84 |
+ 0.00% | 0 / 84 |
+ 0.00% | 0 / 84 |
+ 0.00% | 0 / 84 |
+ 0.00% | 0 / 84 |
+ 0.00% | 0 / 83 |
+ 0.00% | 0 / 83 |
+ 0.00% | 0 / 83 |
+ 0.00% | 0 / 83 |
+ 0.00% | 0 / 83 |
+ 0.00% | 0 / 83 |
+ 0.00% | 0 / 83 |
+ 0.00% | 0 / 83 |
+ 0.00% | 0 / 83 | MMMMMMMMMMMMMMM 1.19% | 1 / 84 |
+ 67.86% ::::::::::::::::::::::::::: | 57 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.20% | 1 / 83 |
+ 1.20% | 1 / 83 |
+ 1.20% | 1 / 83 |
+ 1.20% | 1 / 83 |
+ 1.20% | 1 / 83 |
+ 1.20% | 1 / 83 |
+ 1.20% | 1 / 83 |
+ 1.20% | 1 / 83 |
+ 1.20% | 1 / 83 | MMMMMMMMMMMMMMM 1.19% | 1 / 84 |
+ 67.86% ::::::::::::::::::::::::::: | 57 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 75.00% :::::::::::::::::::::::::::::: | 63 / 84 |
+ 1.20% | 1 / 83 |
+ 80.72% :::::::::::::::::::::::::::::::: | 67 / 83 |
+ 1.20% | 1 / 83 |
+ 79.52% ::::::::::::::::::::::::::::::: | 66 / 83 |
+ 1.20% | 1 / 83 |
+ 1.20% | 1 / 83 |
+ 98.80% ::::::::::::::::::::::::::::::::::::::: | 82 / 83 |
+ 98.80% ::::::::::::::::::::::::::::::::::::::: | 82 / 83 |
+ 1.20% | 1 / 83 | MMMMMMMMMMMMMMM 1.19% | 1 / 84 |
+ 67.86% ::::::::::::::::::::::::::: | 57 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 75.00% :::::::::::::::::::::::::::::: | 63 / 84 |
+ 1.20% | 1 / 83 |
+ 80.72% :::::::::::::::::::::::::::::::: | 67 / 83 |
+ 1.20% | 1 / 83 |
+ 79.52% ::::::::::::::::::::::::::::::: | 66 / 83 |
+ 87.95% ::::::::::::::::::::::::::::::::::: | 73 / 83 |
+ 1.20% | 1 / 83 |
+ 98.80% ::::::::::::::::::::::::::::::::::::::: | 82 / 83 |
+ 98.80% ::::::::::::::::::::::::::::::::::::::: | 82 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 | MMMMMMMMMMMMMMM 1.19% | 1 / 84 |
+ 67.86% ::::::::::::::::::::::::::: | 57 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 75.00% :::::::::::::::::::::::::::::: | 63 / 84 |
+ 1.20% | 1 / 83 |
+ 80.72% :::::::::::::::::::::::::::::::: | 67 / 83 |
+ 1.20% | 1 / 83 |
+ 79.52% ::::::::::::::::::::::::::::::: | 66 / 83 |
+ 87.95% ::::::::::::::::::::::::::::::::::: | 73 / 83 |
+ 1.20% | 1 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 98.80% ::::::::::::::::::::::::::::::::::::::: | 82 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 | MMMMMMMMMMMMMMM 1.19% | 1 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 70 / 84 |
+ 1.19% | 1 / 84 |
+ 75.00% :::::::::::::::::::::::::::::: | 63 / 84 |
+ 1.20% | 1 / 83 |
+ 80.72% :::::::::::::::::::::::::::::::: | 67 / 83 |
+ 95.18% :::::::::::::::::::::::::::::::::::::: | 79 / 83 |
+ 79.52% ::::::::::::::::::::::::::::::: | 66 / 83 |
+ 87.95% ::::::::::::::::::::::::::::::::::: | 73 / 83 |
+ 87.95% ::::::::::::::::::::::::::::::::::: | 73 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 98.80% ::::::::::::::::::::::::::::::::::::::: | 82 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 | MMMMMMMMMMMMMMM 1.19% | 1 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 70 / 84 |
+ 1.19% | 1 / 84 |
+ 75.00% :::::::::::::::::::::::::::::: | 63 / 84 |
+ 90.36% :::::::::::::::::::::::::::::::::::: | 75 / 83 |
+ 80.72% :::::::::::::::::::::::::::::::: | 67 / 83 |
+ 95.18% :::::::::::::::::::::::::::::::::::::: | 79 / 83 |
+ 79.52% ::::::::::::::::::::::::::::::: | 66 / 83 |
+ 87.95% ::::::::::::::::::::::::::::::::::: | 73 / 83 |
+ 87.95% ::::::::::::::::::::::::::::::::::: | 73 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 | MMMMMMMMMMMMMMM 1.19% | 1 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 70 / 84 |
+ 1.19% | 1 / 84 |
+ 75.00% :::::::::::::::::::::::::::::: | 63 / 84 |
+ 90.36% :::::::::::::::::::::::::::::::::::: | 75 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 95.18% :::::::::::::::::::::::::::::::::::::: | 79 / 83 |
+ 79.52% ::::::::::::::::::::::::::::::: | 66 / 83 |
+ 87.95% ::::::::::::::::::::::::::::::::::: | 73 / 83 |
+ 87.95% ::::::::::::::::::::::::::::::::::: | 73 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 | MMMMMMMMMMMMMMM 1.19% | 1 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 70 / 84 |
+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
+ 75.00% :::::::::::::::::::::::::::::: | 63 / 84 |
+ 90.36% :::::::::::::::::::::::::::::::::::: | 75 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 95.18% :::::::::::::::::::::::::::::::::::::: | 79 / 83 |
+ 79.52% ::::::::::::::::::::::::::::::: | 66 / 83 |
+ 87.95% ::::::::::::::::::::::::::::::::::: | 73 / 83 |
+ 87.95% ::::::::::::::::::::::::::::::::::: | 73 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 | MMMMMMMMMMMMMMM 90.48% :::::::::::::::::::::::::::::::::::: | 76 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 70 / 84 |
+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
+ 75.00% :::::::::::::::::::::::::::::: | 63 / 84 |
+ 90.36% :::::::::::::::::::::::::::::::::::: | 75 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 95.18% :::::::::::::::::::::::::::::::::::::: | 79 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 87.95% ::::::::::::::::::::::::::::::::::: | 73 / 83 |
+ 87.95% ::::::::::::::::::::::::::::::::::: | 73 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 | MMMMMMMMMMMMMMM 90.48% :::::::::::::::::::::::::::::::::::: | 76 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 70 / 84 |
+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
+ 75.00% :::::::::::::::::::::::::::::: | 63 / 84 |
+ 90.36% :::::::::::::::::::::::::::::::::::: | 75 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 87.95% ::::::::::::::::::::::::::::::::::: | 73 / 83 |
+ 87.95% ::::::::::::::::::::::::::::::::::: | 73 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 | MMMMMMMMMMMMMMM 90.48% :::::::::::::::::::::::::::::::::::: | 76 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 70 / 84 |
+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
+ 75.00% :::::::::::::::::::::::::::::: | 63 / 84 |
+ 90.36% :::::::::::::::::::::::::::::::::::: | 75 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 87.95% ::::::::::::::::::::::::::::::::::: | 73 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 | MMMMMMMMMMMMMMM 90.48% :::::::::::::::::::::::::::::::::::: | 76 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 70 / 84 |
+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
+ 75.00% :::::::::::::::::::::::::::::: | 63 / 84 |
+ 90.36% :::::::::::::::::::::::::::::::::::: | 75 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 | MMMMMMMMMMMMMMM 90.48% :::::::::::::::::::::::::::::::::::: | 76 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 70 / 84 |
+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
+ 75.00% :::::::::::::::::::::::::::::: | 63 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 70 / 84 |
+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
+ 75.00% :::::::::::::::::::::::::::::: | 63 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 88.10% ::::::::::::::::::::::::::::::::::: | 74 / 84 |
+ 75.00% :::::::::::::::::::::::::::::: | 63 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 75.00% :::::::::::::::::::::::::::::: | 63 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/12 [00:00<?, ?it/s]
writing stems to file: 67%|██████▋ | 8/12 [00:00<00:00, 75.86it/s]
writing stems to file: 100%|██████████| 12/12 [00:00<00:00, 88.17it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/12 [00:00<?, ?it/s]
8%|▊ | 1/12 [00:00<00:04, 2.43it/s]
25%|██▌ | 3/12 [00:00<00:01, 6.38it/s]
42%|████▏ | 5/12 [00:00<00:00, 9.40it/s]
58%|█████▊ | 7/12 [00:00<00:00, 11.44it/s]
75%|███████▌ | 9/12 [00:00<00:00, 13.09it/s]
92%|█████████▏| 11/12 [00:01<00:00, 10.72it/s]
100%|██████████| 12/12 [00:01<00:00, 9.67it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/074/0.4/074_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/074/0.1/074_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/074/0.0/074_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/074/0.3/074_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/074/0.1/074_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/074/0.0/074_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/074/0.3/074_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/074/0.1/074_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/074/0.3/074_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/074/0.0/074_T10.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/074/0.0/074_T9.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/074/0.0/074_T11.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/085.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/085
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/085.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/085
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:09, 1.40s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:08, 1.37s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:04<00:07, 1.46s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:06<00:07, 1.86s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:10<00:07, 2.56s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:13<00:05, 2.51s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:15<00:02, 2.61s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:19<00:00, 2.86s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:19<00:00, 2.40s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/36 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/36 [00:00<00:09, 3.63it/s]
slice data vertically and clustering: 6%|▌ | 2/36 [00:00<00:14, 2.39it/s]
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slice data vertically and clustering: 11%|█ | 4/36 [00:02<00:23, 1.39it/s]
slice data vertically and clustering: 14%|█▍ | 5/36 [00:03<00:26, 1.15it/s]
slice data vertically and clustering: 17%|█▋ | 6/36 [00:04<00:27, 1.11it/s]
slice data vertically and clustering: 19%|█▉ | 7/36 [00:05<00:24, 1.20it/s]
slice data vertically and clustering: 22%|██▏ | 8/36 [00:05<00:20, 1.34it/s]
slice data vertically and clustering: 25%|██▌ | 9/36 [00:06<00:17, 1.53it/s]
slice data vertically and clustering: 28%|██▊ | 10/36 [00:06<00:14, 1.78it/s]
slice data vertically and clustering: 31%|███ | 11/36 [00:06<00:11, 2.15it/s]
slice data vertically and clustering: 33%|███▎ | 12/36 [00:07<00:09, 2.60it/s]
slice data vertically and clustering: 36%|███▌ | 13/36 [00:07<00:07, 3.16it/s]
slice data vertically and clustering: 39%|███▉ | 14/36 [00:07<00:05, 3.84it/s]
slice data vertically and clustering: 44%|████▍ | 16/36 [00:07<00:03, 5.55it/s]
slice data vertically and clustering: 50%|█████ | 18/36 [00:07<00:02, 7.61it/s]
slice data vertically and clustering: 58%|█████▊ | 21/36 [00:07<00:01, 11.34it/s]
slice data vertically and clustering: 72%|███████▏ | 26/36 [00:07<00:00, 18.95it/s]
slice data vertically and clustering: 100%|██████████| 36/36 [00:07<00:00, 4.52it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+MMMMMMMMMMMMMMM 0.00% | 0 / 76 |
+ 1.32% | 1 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 | MMMMMMMMMMMMMMM 1.32% | 1 / 76 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 64 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 | MMMMMMMMMMMMMMM 97.37% :::::::::::::::::::::::::::::::::::::: | 74 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 80.26% :::::::::::::::::::::::::::::::: | 61 / 76 |
+ 78.95% ::::::::::::::::::::::::::::::: | 60 / 76 |
+ 1.32% | 1 / 76 |
+ 98.68% ::::::::::::::::::::::::::::::::::::::: | 75 / 76 |
+ 93.42% ::::::::::::::::::::::::::::::::::::: | 71 / 76 |
+ 78.95% ::::::::::::::::::::::::::::::: | 60 / 76 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 97.33% :::::::::::::::::::::::::::::::::::::: | 73 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 78.67% ::::::::::::::::::::::::::::::: | 59 / 75 | MMMMMMMMMMMMMMM 97.37% :::::::::::::::::::::::::::::::::::::: | 74 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 80.26% :::::::::::::::::::::::::::::::: | 61 / 76 |
+ 78.95% ::::::::::::::::::::::::::::::: | 60 / 76 |
+ 1.32% | 1 / 76 |
+ 98.68% ::::::::::::::::::::::::::::::::::::::: | 75 / 76 |
+ 93.42% ::::::::::::::::::::::::::::::::::::: | 71 / 76 |
+ 78.95% ::::::::::::::::::::::::::::::: | 60 / 76 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 97.33% :::::::::::::::::::::::::::::::::::::: | 73 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 78.67% ::::::::::::::::::::::::::::::: | 59 / 75 | MMMMMMMMMMMMMMM 97.37% :::::::::::::::::::::::::::::::::::::: | 74 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 78.95% ::::::::::::::::::::::::::::::: | 60 / 76 |
+ 1.32% | 1 / 76 |
+ 98.68% ::::::::::::::::::::::::::::::::::::::: | 75 / 76 |
+ 93.42% ::::::::::::::::::::::::::::::::::::: | 71 / 76 |
+ 78.95% ::::::::::::::::::::::::::::::: | 60 / 76 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 97.33% :::::::::::::::::::::::::::::::::::::: | 73 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 78.67% ::::::::::::::::::::::::::::::: | 59 / 75 | MMMMMMMMMMMMMMM 97.37% :::::::::::::::::::::::::::::::::::::: | 74 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 78.95% ::::::::::::::::::::::::::::::: | 60 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 98.68% ::::::::::::::::::::::::::::::::::::::: | 75 / 76 |
+ 93.42% ::::::::::::::::::::::::::::::::::::: | 71 / 76 |
+ 78.95% ::::::::::::::::::::::::::::::: | 60 / 76 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 97.33% :::::::::::::::::::::::::::::::::::::: | 73 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 78.67% ::::::::::::::::::::::::::::::: | 59 / 75 | MMMMMMMMMMMMMMM 97.37% :::::::::::::::::::::::::::::::::::::: | 74 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 78.95% ::::::::::::::::::::::::::::::: | 60 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 98.68% ::::::::::::::::::::::::::::::::::::::: | 75 / 76 |
+ 93.42% ::::::::::::::::::::::::::::::::::::: | 71 / 76 |
+ 78.95% ::::::::::::::::::::::::::::::: | 60 / 76 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 97.33% :::::::::::::::::::::::::::::::::::::: | 73 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 78.67% ::::::::::::::::::::::::::::::: | 59 / 75 | MMMMMMMMMMMMMMM 97.37% :::::::::::::::::::::::::::::::::::::: | 74 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 78.95% ::::::::::::::::::::::::::::::: | 60 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 98.68% ::::::::::::::::::::::::::::::::::::::: | 75 / 76 |
+ 93.42% ::::::::::::::::::::::::::::::::::::: | 71 / 76 |
+ 78.95% ::::::::::::::::::::::::::::::: | 60 / 76 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 97.33% :::::::::::::::::::::::::::::::::::::: | 73 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 78.67% ::::::::::::::::::::::::::::::: | 59 / 75 | MMMMMMMMMMMMMMM 97.37% :::::::::::::::::::::::::::::::::::::: | 74 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 78.95% ::::::::::::::::::::::::::::::: | 60 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 98.68% ::::::::::::::::::::::::::::::::::::::: | 75 / 76 |
+ 93.42% ::::::::::::::::::::::::::::::::::::: | 71 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 97.33% :::::::::::::::::::::::::::::::::::::: | 73 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 78.67% ::::::::::::::::::::::::::::::: | 59 / 75 | MMMMMMMMMMMMMMM 97.37% :::::::::::::::::::::::::::::::::::::: | 74 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 78.95% ::::::::::::::::::::::::::::::: | 60 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 98.68% ::::::::::::::::::::::::::::::::::::::: | 75 / 76 |
+ 93.42% ::::::::::::::::::::::::::::::::::::: | 71 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 97.33% :::::::::::::::::::::::::::::::::::::: | 73 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 78.67% ::::::::::::::::::::::::::::::: | 59 / 75 | MMMMMMMMMMMMMMM 97.37% :::::::::::::::::::::::::::::::::::::: | 74 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 78.95% ::::::::::::::::::::::::::::::: | 60 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 98.68% ::::::::::::::::::::::::::::::::::::::: | 75 / 76 |
+ 93.42% ::::::::::::::::::::::::::::::::::::: | 71 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 78.67% ::::::::::::::::::::::::::::::: | 59 / 75 | MMMMMMMMMMMMMMM 97.37% :::::::::::::::::::::::::::::::::::::: | 74 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 98.68% ::::::::::::::::::::::::::::::::::::::: | 75 / 76 |
+ 93.42% ::::::::::::::::::::::::::::::::::::: | 71 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 78.67% ::::::::::::::::::::::::::::::: | 59 / 75 | MMMMMMMMMMMMMMM 97.37% :::::::::::::::::::::::::::::::::::::: | 74 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 98.68% ::::::::::::::::::::::::::::::::::::::: | 75 / 76 |
+ 93.42% ::::::::::::::::::::::::::::::::::::: | 71 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 | MMMMMMMMMMMMMMM 97.37% :::::::::::::::::::::::::::::::::::::: | 74 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 98.68% ::::::::::::::::::::::::::::::::::::::: | 75 / 76 |
+ 93.42% ::::::::::::::::::::::::::::::::::::: | 71 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 | MMMMMMMMMMMMMMM 97.37% :::::::::::::::::::::::::::::::::::::: | 74 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 98.68% ::::::::::::::::::::::::::::::::::::::: | 75 / 76 |
+ 93.42% ::::::::::::::::::::::::::::::::::::: | 71 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 98.68% ::::::::::::::::::::::::::::::::::::::: | 75 / 76 |
+ 93.42% ::::::::::::::::::::::::::::::::::::: | 71 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 93.42% ::::::::::::::::::::::::::::::::::::: | 71 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/4 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 4/4 [00:00<00:00, 112.19it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/4 [00:00<?, ?it/s]
25%|██▌ | 1/4 [00:00<00:01, 2.81it/s]
75%|███████▌ | 3/4 [00:00<00:00, 5.61it/s]
100%|██████████| 4/4 [00:00<00:00, 5.91it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/085/0.3/085_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/085/0.1/085_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/085/0.0/085_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/085/0.2/085_T1.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/098.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/098
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/098.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/098
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:10, 1.45s/it]
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read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.22s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/36 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/36 [00:00<00:10, 3.26it/s]
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slice data vertically and clustering: 17%|█▋ | 6/36 [00:05<00:30, 1.00s/it]
slice data vertically and clustering: 19%|█▉ | 7/36 [00:05<00:26, 1.10it/s]
slice data vertically and clustering: 22%|██▏ | 8/36 [00:06<00:22, 1.26it/s]
slice data vertically and clustering: 25%|██▌ | 9/36 [00:06<00:18, 1.47it/s]
slice data vertically and clustering: 28%|██▊ | 10/36 [00:07<00:14, 1.73it/s]
slice data vertically and clustering: 31%|███ | 11/36 [00:07<00:11, 2.11it/s]
slice data vertically and clustering: 33%|███▎ | 12/36 [00:07<00:09, 2.56it/s]
slice data vertically and clustering: 36%|███▌ | 13/36 [00:07<00:07, 3.14it/s]
slice data vertically and clustering: 39%|███▉ | 14/36 [00:07<00:05, 3.85it/s]
slice data vertically and clustering: 44%|████▍ | 16/36 [00:08<00:03, 5.69it/s]
slice data vertically and clustering: 53%|█████▎ | 19/36 [00:08<00:01, 8.98it/s]
slice data vertically and clustering: 64%|██████▍ | 23/36 [00:08<00:00, 14.25it/s]
slice data vertically and clustering: 100%|██████████| 36/36 [00:08<00:00, 4.29it/s]fitting convex hulls to clusters
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+ 0.00% | 0 / 86 | MMMMMMMMMMMMMMM 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 52.87% ::::::::::::::::::::: | 46 / 87 |
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+ 1.16% | 1 / 86 | MMMMMMMMMMMMMMM 82.76% ::::::::::::::::::::::::::::::::: | 72 / 87 |
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+ 72.09% :::::::::::::::::::::::::::: | 62 / 86 |
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+ 1.16% | 1 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
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+ 1.16% | 1 / 86 |
+ 90.70% :::::::::::::::::::::::::::::::::::: | 78 / 86 |
+ 1.16% | 1 / 86 |
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+ 88.37% ::::::::::::::::::::::::::::::::::: | 76 / 86 |
+ 93.02% ::::::::::::::::::::::::::::::::::::: | 80 / 86 |
+ 1.16% | 1 / 86 |
+ 1.16% | 1 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 77.01% :::::::::::::::::::::::::::::: | 67 / 87 |
+ 83.72% ::::::::::::::::::::::::::::::::: | 72 / 86 |
+ 77.91% ::::::::::::::::::::::::::::::: | 67 / 86 |
+ 1.16% | 1 / 86 |
+ 90.70% :::::::::::::::::::::::::::::::::::: | 78 / 86 |
+ 1.16% | 1 / 86 |
+ 72.09% :::::::::::::::::::::::::::: | 62 / 86 |
+ 86.05% :::::::::::::::::::::::::::::::::: | 74 / 86 |
+ 98.84% ::::::::::::::::::::::::::::::::::::::: | 85 / 86 |
+ 88.37% ::::::::::::::::::::::::::::::::::: | 76 / 86 |
+ 93.02% ::::::::::::::::::::::::::::::::::::: | 80 / 86 |
+ 1.16% | 1 / 86 |
+ 1.16% | 1 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.72% ::::::::::::::::::::::::::::::::: | 72 / 86 |
+ 77.91% ::::::::::::::::::::::::::::::: | 67 / 86 |
+ 1.16% | 1 / 86 |
+ 90.70% :::::::::::::::::::::::::::::::::::: | 78 / 86 |
+ 1.16% | 1 / 86 |
+ 72.09% :::::::::::::::::::::::::::: | 62 / 86 |
+ 86.05% :::::::::::::::::::::::::::::::::: | 74 / 86 |
+ 98.84% ::::::::::::::::::::::::::::::::::::::: | 85 / 86 |
+ 88.37% ::::::::::::::::::::::::::::::::::: | 76 / 86 |
+ 93.02% ::::::::::::::::::::::::::::::::::::: | 80 / 86 |
+ 1.16% | 1 / 86 |
+ 1.16% | 1 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.72% ::::::::::::::::::::::::::::::::: | 72 / 86 |
+ 77.91% ::::::::::::::::::::::::::::::: | 67 / 86 |
+ 1.16% | 1 / 86 |
+ 90.70% :::::::::::::::::::::::::::::::::::: | 78 / 86 |
+ 1.16% | 1 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 86.05% :::::::::::::::::::::::::::::::::: | 74 / 86 |
+ 98.84% ::::::::::::::::::::::::::::::::::::::: | 85 / 86 |
+ 88.37% ::::::::::::::::::::::::::::::::::: | 76 / 86 |
+ 93.02% ::::::::::::::::::::::::::::::::::::: | 80 / 86 |
+ 1.16% | 1 / 86 |
+ 1.16% | 1 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.72% ::::::::::::::::::::::::::::::::: | 72 / 86 |
+ 77.91% ::::::::::::::::::::::::::::::: | 67 / 86 |
+ 1.16% | 1 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 96.51% :::::::::::::::::::::::::::::::::::::: | 83 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 86.05% :::::::::::::::::::::::::::::::::: | 74 / 86 |
+ 98.84% ::::::::::::::::::::::::::::::::::::::: | 85 / 86 |
+ 88.37% ::::::::::::::::::::::::::::::::::: | 76 / 86 |
+ 93.02% ::::::::::::::::::::::::::::::::::::: | 80 / 86 |
+ 95.35% :::::::::::::::::::::::::::::::::::::: | 82 / 86 |
+ 1.16% | 1 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.72% ::::::::::::::::::::::::::::::::: | 72 / 86 |
+ 77.91% ::::::::::::::::::::::::::::::: | 67 / 86 |
+ 1.16% | 1 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 96.51% :::::::::::::::::::::::::::::::::::::: | 83 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 86.05% :::::::::::::::::::::::::::::::::: | 74 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 88.37% ::::::::::::::::::::::::::::::::::: | 76 / 86 |
+ 93.02% ::::::::::::::::::::::::::::::::::::: | 80 / 86 |
+ 95.35% :::::::::::::::::::::::::::::::::::::: | 82 / 86 |
+ 1.16% | 1 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.72% ::::::::::::::::::::::::::::::::: | 72 / 86 |
+ 77.91% ::::::::::::::::::::::::::::::: | 67 / 86 |
+ 91.86% :::::::::::::::::::::::::::::::::::: | 79 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 96.51% :::::::::::::::::::::::::::::::::::::: | 83 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 86.05% :::::::::::::::::::::::::::::::::: | 74 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 88.37% ::::::::::::::::::::::::::::::::::: | 76 / 86 |
+ 93.02% ::::::::::::::::::::::::::::::::::::: | 80 / 86 |
+ 95.35% :::::::::::::::::::::::::::::::::::::: | 82 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.72% ::::::::::::::::::::::::::::::::: | 72 / 86 |
+ 77.91% ::::::::::::::::::::::::::::::: | 67 / 86 |
+ 91.86% :::::::::::::::::::::::::::::::::::: | 79 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 96.51% :::::::::::::::::::::::::::::::::::::: | 83 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 86.05% :::::::::::::::::::::::::::::::::: | 74 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 93.02% ::::::::::::::::::::::::::::::::::::: | 80 / 86 |
+ 95.35% :::::::::::::::::::::::::::::::::::::: | 82 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.72% ::::::::::::::::::::::::::::::::: | 72 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 91.86% :::::::::::::::::::::::::::::::::::: | 79 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 96.51% :::::::::::::::::::::::::::::::::::::: | 83 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 86.05% :::::::::::::::::::::::::::::::::: | 74 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 93.02% ::::::::::::::::::::::::::::::::::::: | 80 / 86 |
+ 95.35% :::::::::::::::::::::::::::::::::::::: | 82 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.72% ::::::::::::::::::::::::::::::::: | 72 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 91.86% :::::::::::::::::::::::::::::::::::: | 79 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 96.51% :::::::::::::::::::::::::::::::::::::: | 83 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 86.05% :::::::::::::::::::::::::::::::::: | 74 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 95.35% :::::::::::::::::::::::::::::::::::::: | 82 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.72% ::::::::::::::::::::::::::::::::: | 72 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 91.86% :::::::::::::::::::::::::::::::::::: | 79 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 96.51% :::::::::::::::::::::::::::::::::::::: | 83 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 95.35% :::::::::::::::::::::::::::::::::::::: | 82 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.72% ::::::::::::::::::::::::::::::::: | 72 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 91.86% :::::::::::::::::::::::::::::::::::: | 79 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 96.51% :::::::::::::::::::::::::::::::::::::: | 83 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.72% ::::::::::::::::::::::::::::::::: | 72 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 91.86% :::::::::::::::::::::::::::::::::::: | 79 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.72% ::::::::::::::::::::::::::::::::: | 72 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/4 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 4/4 [00:00<00:00, 109.35it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/4 [00:00<?, ?it/s]
25%|██▌ | 1/4 [00:00<00:00, 4.14it/s]
75%|███████▌ | 3/4 [00:00<00:00, 8.26it/s]
100%|██████████| 4/4 [00:00<00:00, 9.62it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/098/0.1/098_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/098/0.1/098_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/098/0.2/098_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/098/0.1/098_T2.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/104.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/104
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/104.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/104
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:06, 1.15it/s]
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read in neighbouring tiles: 88%|████████▊ | 7/8 [00:11<00:02, 2.19s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:14<00:00, 2.57s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:14<00:00, 1.83s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/36 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/36 [00:00<00:16, 2.14it/s]
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slice data vertically and clustering: 11%|█ | 4/36 [00:03<00:32, 1.02s/it]
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slice data vertically and clustering: 17%|█▋ | 6/36 [00:06<00:36, 1.22s/it]
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slice data vertically and clustering: 22%|██▏ | 8/36 [00:08<00:28, 1.01s/it]
slice data vertically and clustering: 25%|██▌ | 9/36 [00:08<00:23, 1.16it/s]
slice data vertically and clustering: 28%|██▊ | 10/36 [00:09<00:18, 1.38it/s]
slice data vertically and clustering: 31%|███ | 11/36 [00:09<00:15, 1.64it/s]
slice data vertically and clustering: 33%|███▎ | 12/36 [00:09<00:11, 2.01it/s]
slice data vertically and clustering: 36%|███▌ | 13/36 [00:09<00:09, 2.46it/s]
slice data vertically and clustering: 39%|███▉ | 14/36 [00:10<00:07, 3.02it/s]
slice data vertically and clustering: 42%|████▏ | 15/36 [00:10<00:05, 3.73it/s]
slice data vertically and clustering: 47%|████▋ | 17/36 [00:10<00:03, 5.56it/s]
slice data vertically and clustering: 53%|█████▎ | 19/36 [00:10<00:02, 7.67it/s]
slice data vertically and clustering: 61%|██████ | 22/36 [00:10<00:01, 11.67it/s]
slice data vertically and clustering: 86%|████████▌ | 31/36 [00:10<00:00, 27.57it/s]
slice data vertically and clustering: 100%|██████████| 36/36 [00:10<00:00, 3.40it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 98 |
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+ 0.00% | 0 / 97 | MMMMMMMMMMMMMMM 1.02% | 1 / 98 |
+ 66.33% :::::::::::::::::::::::::: | 65 / 98 |
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+ 1.03% | 1 / 97 | MMMMMMMMMMMMMMM 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
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+ 79.38% ::::::::::::::::::::::::::::::: | 77 / 97 | MMMMMMMMMMMMMMM 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
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+ 79.38% ::::::::::::::::::::::::::::::: | 77 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
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+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
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+ 74.49% ::::::::::::::::::::::::::::: | 73 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 75.51% :::::::::::::::::::::::::::::: | 74 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 73.47% ::::::::::::::::::::::::::::: | 72 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 84.54% ::::::::::::::::::::::::::::::::: | 82 / 97 |
+ 86.60% :::::::::::::::::::::::::::::::::: | 84 / 97 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 72.45% :::::::::::::::::::::::::::: | 71 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 54.08% ::::::::::::::::::::: | 53 / 98 |
+ 74.49% ::::::::::::::::::::::::::::: | 73 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 75.51% :::::::::::::::::::::::::::::: | 74 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 73.47% ::::::::::::::::::::::::::::: | 72 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 84.54% ::::::::::::::::::::::::::::::::: | 82 / 97 |
+ 86.60% :::::::::::::::::::::::::::::::::: | 84 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 54.08% ::::::::::::::::::::: | 53 / 98 |
+ 74.49% ::::::::::::::::::::::::::::: | 73 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 75.51% :::::::::::::::::::::::::::::: | 74 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 73.47% ::::::::::::::::::::::::::::: | 72 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 84.54% ::::::::::::::::::::::::::::::::: | 82 / 97 |
+ 86.60% :::::::::::::::::::::::::::::::::: | 84 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 54.08% ::::::::::::::::::::: | 53 / 98 |
+ 74.49% ::::::::::::::::::::::::::::: | 73 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 73.47% ::::::::::::::::::::::::::::: | 72 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 86.60% :::::::::::::::::::::::::::::::::: | 84 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 54.08% ::::::::::::::::::::: | 53 / 98 |
+ 74.49% ::::::::::::::::::::::::::::: | 73 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 86.60% :::::::::::::::::::::::::::::::::: | 84 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 54.08% ::::::::::::::::::::: | 53 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 75.51% :::::::::::::::::::::::::::::: | 74 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 86.60% :::::::::::::::::::::::::::::::::: | 84 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 54.08% ::::::::::::::::::::: | 53 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 75.51% :::::::::::::::::::::::::::::: | 74 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 75.51% :::::::::::::::::::::::::::::: | 74 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
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+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
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+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
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+ 40.00% :::::::::::::::: | 2 / 5 |
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+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/5 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 5/5 [00:00<00:00, 100.87it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/5 [00:00<?, ?it/s]
20%|██ | 1/5 [00:00<00:00, 7.11it/s]
60%|██████ | 3/5 [00:00<00:00, 11.80it/s]
100%|██████████| 5/5 [00:00<00:00, 14.14it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/104/0.1/104_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/104/0.3/104_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/104/0.2/104_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/104/0.0/104_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/104/0.0/104_T3.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/125.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/125
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/125.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/125
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:02, 2.40it/s]
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read in neighbouring tiles: 100%|██████████| 8/8 [00:09<00:00, 1.19s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/36 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/36 [00:00<00:06, 5.03it/s]
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slice data vertically and clustering: 28%|██▊ | 10/36 [00:04<00:08, 2.95it/s]
slice data vertically and clustering: 31%|███ | 11/36 [00:04<00:07, 3.53it/s]
slice data vertically and clustering: 33%|███▎ | 12/36 [00:04<00:05, 4.19it/s]
slice data vertically and clustering: 36%|███▌ | 13/36 [00:04<00:04, 5.05it/s]
slice data vertically and clustering: 42%|████▏ | 15/36 [00:04<00:02, 7.20it/s]
slice data vertically and clustering: 50%|█████ | 18/36 [00:04<00:01, 11.21it/s]
slice data vertically and clustering: 67%|██████▋ | 24/36 [00:04<00:00, 21.26it/s]
slice data vertically and clustering: 100%|██████████| 36/36 [00:04<00:00, 7.26it/s]fitting convex hulls to clusters
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+ 0.00% | 0 / 78 | MMMMMMMMMMMMMMM 88.61% ::::::::::::::::::::::::::::::::::: | 70 / 79 |
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+ 0.00% | 0 / 78 | MMMMMMMMMMMMMMM 88.61% ::::::::::::::::::::::::::::::::::: | 70 / 79 |
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+ 0.00% | 0 / 78 | MMMMMMMMMMMMMMM 88.61% ::::::::::::::::::::::::::::::::::: | 70 / 79 |
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+ 0.00% | 0 / 78 | MMMMMMMMMMMMMMM 88.61% ::::::::::::::::::::::::::::::::::: | 70 / 79 |
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+ 0.00% | 0 / 78 | MMMMMMMMMMMMMMM 88.61% ::::::::::::::::::::::::::::::::::: | 70 / 79 |
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+ 0.00% | 0 / 78 | MMMMMMMMMMMMMMM 88.61% ::::::::::::::::::::::::::::::::::: | 70 / 79 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 0.00% | 0 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 1.28% | 1 / 78 |
+ 0.00% | 0 / 78 | MMMMMMMMMMMMMMM 88.61% ::::::::::::::::::::::::::::::::::: | 70 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 0.00% | 0 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 81.01% :::::::::::::::::::::::::::::::: | 64 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 1.28% | 1 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 1.28% | 1 / 78 |
+ 1.28% | 1 / 78 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 81.01% :::::::::::::::::::::::::::::::: | 64 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 1.28% | 1 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 1.28% | 1 / 78 |
+ 1.28% | 1 / 78 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 1.28% | 1 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 1.28% | 1 / 78 |
+ 1.28% | 1 / 78 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 1.28% | 1 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 1.28% | 1 / 78 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 1.28% | 1 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 84.81% ::::::::::::::::::::::::::::::::: | 67 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 78 / 78 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/9 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 9/9 [00:00<00:00, 122.41it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/9 [00:00<?, ?it/s]
11%|█ | 1/9 [00:00<00:01, 4.21it/s]
44%|████▍ | 4/9 [00:00<00:00, 12.67it/s]
89%|████████▉ | 8/9 [00:00<00:00, 20.94it/s]
100%|██████████| 9/9 [00:00<00:00, 17.91it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/125/0.5/125_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/125/0.2/125_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/125/0.1/125_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/125/0.1/125_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/125/0.1/125_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/125/0.0/125_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/125/0.3/125_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/125/0.1/125_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/125/0.1/125_T7.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/140.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/140
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/140.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/140
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:02, 2.36it/s]
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read in neighbouring tiles: 88%|████████▊ | 7/8 [00:08<00:01, 1.63s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:11<00:00, 2.06s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:11<00:00, 1.39s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/41 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/41 [00:00<00:04, 8.23it/s]
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slice data vertically and clustering: 22%|██▏ | 9/41 [00:03<00:12, 2.57it/s]
slice data vertically and clustering: 24%|██▍ | 10/41 [00:03<00:10, 3.06it/s]
slice data vertically and clustering: 27%|██▋ | 11/41 [00:04<00:08, 3.67it/s]
slice data vertically and clustering: 29%|██▉ | 12/41 [00:04<00:06, 4.40it/s]
slice data vertically and clustering: 34%|███▍ | 14/41 [00:04<00:04, 6.29it/s]
slice data vertically and clustering: 41%|████▏ | 17/41 [00:04<00:02, 9.83it/s]
slice data vertically and clustering: 54%|█████▎ | 22/41 [00:04<00:01, 17.28it/s]
slice data vertically and clustering: 98%|█████████▊| 40/41 [00:04<00:00, 51.62it/s]
slice data vertically and clustering: 100%|██████████| 41/41 [00:04<00:00, 8.75it/s]fitting convex hulls to clusters
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+ 0.00% | 0 / 80 | MMMMMMMMMMMMMMM 83.95% ::::::::::::::::::::::::::::::::: | 68 / 81 |
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+ 81.25% :::::::::::::::::::::::::::::::: | 65 / 80 |
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+ 1.25% | 1 / 80 |
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+ 81.25% :::::::::::::::::::::::::::::::: | 65 / 80 |
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+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 90.00% :::::::::::::::::::::::::::::::::::: | 72 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 90.00% :::::::::::::::::::::::::::::::::::: | 72 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/7 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 7/7 [00:00<00:00, 123.49it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/7 [00:00<?, ?it/s]
14%|█▍ | 1/7 [00:00<00:01, 3.82it/s]
43%|████▎ | 3/7 [00:00<00:00, 9.32it/s]
86%|████████▌ | 6/7 [00:00<00:00, 15.97it/s]
100%|██████████| 7/7 [00:00<00:00, 13.88it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/140/0.1/140_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/140/0.4/140_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/140/0.0/140_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/140/0.1/140_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/140/0.0/140_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/140/0.1/140_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/140/0.0/140_T4.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/151.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/151
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/151.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/151
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:04, 1.72it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:08, 1.42s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:03<00:06, 1.39s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:05<00:06, 1.59s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:07<00:05, 1.76s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:10<00:04, 2.14s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:13<00:02, 2.20s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:15<00:00, 2.35s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:15<00:00, 1.97s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/41 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/41 [00:00<00:04, 9.17it/s]
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slice data vertically and clustering: 7%|▋ | 3/41 [00:00<00:14, 2.68it/s]
slice data vertically and clustering: 10%|▉ | 4/41 [00:01<00:18, 1.97it/s]
slice data vertically and clustering: 12%|█▏ | 5/41 [00:02<00:21, 1.65it/s]
slice data vertically and clustering: 15%|█▍ | 6/41 [00:03<00:21, 1.66it/s]
slice data vertically and clustering: 17%|█▋ | 7/41 [00:03<00:18, 1.81it/s]
slice data vertically and clustering: 20%|█▉ | 8/41 [00:03<00:15, 2.12it/s]
slice data vertically and clustering: 22%|██▏ | 9/41 [00:04<00:12, 2.54it/s]
slice data vertically and clustering: 24%|██▍ | 10/41 [00:04<00:10, 3.08it/s]
slice data vertically and clustering: 27%|██▋ | 11/41 [00:04<00:08, 3.74it/s]
slice data vertically and clustering: 32%|███▏ | 13/41 [00:04<00:05, 5.53it/s]
slice data vertically and clustering: 39%|███▉ | 16/41 [00:04<00:02, 8.95it/s]
slice data vertically and clustering: 54%|█████▎ | 22/41 [00:04<00:01, 17.75it/s]
slice data vertically and clustering: 100%|██████████| 41/41 [00:04<00:00, 8.53it/s]fitting convex hulls to clusters
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 56 / 56 | identifying stems...
+fitting cylinders to possible stems...
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+ 25.00% :::::::::: | 1 / 4 |
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+ 33.33% ::::::::::::: | 1 / 3 |
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+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/16 [00:00<?, ?it/s]
writing stems to file: 56%|█████▋ | 9/16 [00:00<00:00, 87.79it/s]
writing stems to file: 100%|██████████| 16/16 [00:00<00:00, 104.10it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/16 [00:00<?, ?it/s]
6%|▋ | 1/16 [00:00<00:04, 3.29it/s]
12%|█▎ | 2/16 [00:00<00:03, 4.15it/s]
25%|██▌ | 4/16 [00:00<00:01, 7.27it/s]
38%|███▊ | 6/16 [00:00<00:01, 9.68it/s]
50%|█████ | 8/16 [00:00<00:00, 11.35it/s]
69%|██████▉ | 11/16 [00:01<00:00, 15.53it/s]
81%|████████▏ | 13/16 [00:01<00:00, 13.94it/s]
94%|█████████▍| 15/16 [00:01<00:00, 15.26it/s]
100%|██████████| 16/16 [00:01<00:00, 11.94it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/151/0.2/151_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/151/0.3/151_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/151/0.1/151_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/151/0.1/151_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/151/0.0/151_T11.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/151/0.2/151_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/151/0.3/151_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/151/0.2/151_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/151/0.0/151_T9.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/151/0.0/151_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/151/0.0/151_T10.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/151/0.1/151_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/151/0.0/151_T15.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/151/0.0/151_T13.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/151/0.0/151_T12.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/151/0.0/151_T14.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/162.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/162
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/162.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/162
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:02, 2.91it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:00<00:02, 2.21it/s]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:01<00:02, 1.94it/s]
read in neighbouring tiles: 50%|█████ | 4/8 [00:02<00:02, 1.45it/s]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:03<00:02, 1.28it/s]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:04<00:01, 1.03it/s]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:06<00:01, 1.21s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:08<00:00, 1.63s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:08<00:00, 1.12s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/41 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/41 [00:00<00:06, 6.33it/s]
slice data vertically and clustering: 5%|▍ | 2/41 [00:00<00:09, 4.32it/s]
slice data vertically and clustering: 7%|▋ | 3/41 [00:00<00:12, 2.99it/s]
slice data vertically and clustering: 10%|▉ | 4/41 [00:01<00:16, 2.30it/s]
slice data vertically and clustering: 12%|█▏ | 5/41 [00:02<00:19, 1.89it/s]
slice data vertically and clustering: 15%|█▍ | 6/41 [00:02<00:18, 1.90it/s]
slice data vertically and clustering: 17%|█▋ | 7/41 [00:03<00:15, 2.13it/s]
slice data vertically and clustering: 20%|█▉ | 8/41 [00:03<00:12, 2.54it/s]
slice data vertically and clustering: 22%|██▏ | 9/41 [00:03<00:10, 3.02it/s]
slice data vertically and clustering: 24%|██▍ | 10/41 [00:03<00:08, 3.62it/s]
slice data vertically and clustering: 27%|██▋ | 11/41 [00:03<00:06, 4.34it/s]
slice data vertically and clustering: 32%|███▏ | 13/41 [00:03<00:04, 6.11it/s]
slice data vertically and clustering: 37%|███▋ | 15/41 [00:04<00:03, 8.17it/s]
slice data vertically and clustering: 44%|████▍ | 18/41 [00:04<00:01, 12.17it/s]
slice data vertically and clustering: 63%|██████▎ | 26/41 [00:04<00:00, 26.16it/s]
slice data vertically and clustering: 100%|██████████| 41/41 [00:04<00:00, 9.51it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 74 |
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+ 0.00% | 0 / 73 |
+ 0.00% | 0 / 73 |
+MMMMMMMMMMMMMMM 1.35% | 1 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
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+ 0.00% | 0 / 73 |
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+ 0.00% | 0 / 73 | MMMMMMMMMMMMMMM 93.24% ::::::::::::::::::::::::::::::::::::: | 69 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 95.95% :::::::::::::::::::::::::::::::::::::: | 71 / 74 |
+ 1.35% | 1 / 74 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 58.90% ::::::::::::::::::::::: | 43 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 58.90% ::::::::::::::::::::::: | 43 / 73 |
+ 94.52% ::::::::::::::::::::::::::::::::::::: | 69 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 91.89% :::::::::::::::::::::::::::::::::::: | 68 / 74 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 58.90% ::::::::::::::::::::::: | 43 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 97.26% :::::::::::::::::::::::::::::::::::::: | 71 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 91.89% :::::::::::::::::::::::::::::::::::: | 68 / 74 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 58.90% ::::::::::::::::::::::: | 43 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 97.26% :::::::::::::::::::::::::::::::::::::: | 71 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 91.89% :::::::::::::::::::::::::::::::::::: | 68 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 58.90% ::::::::::::::::::::::: | 43 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 97.26% :::::::::::::::::::::::::::::::::::::: | 71 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 91.89% :::::::::::::::::::::::::::::::::::: | 68 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 58.90% ::::::::::::::::::::::: | 43 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 97.26% :::::::::::::::::::::::::::::::::::::: | 71 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 91.89% :::::::::::::::::::::::::::::::::::: | 68 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 58.90% ::::::::::::::::::::::: | 43 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 58.90% ::::::::::::::::::::::: | 43 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 58.90% ::::::::::::::::::::::: | 43 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 58.90% ::::::::::::::::::::::: | 43 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 76.71% :::::::::::::::::::::::::::::: | 56 / 73 |
+ 58.90% ::::::::::::::::::::::: | 43 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 76.71% :::::::::::::::::::::::::::::: | 56 / 73 |
+ 58.90% ::::::::::::::::::::::: | 43 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 76.71% :::::::::::::::::::::::::::::: | 56 / 73 |
+ 58.90% ::::::::::::::::::::::: | 43 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 76.71% :::::::::::::::::::::::::::::: | 56 / 73 |
+ 58.90% ::::::::::::::::::::::: | 43 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 76.71% :::::::::::::::::::::::::::::: | 56 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/7 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 7/7 [00:00<00:00, 123.73it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/7 [00:00<?, ?it/s]
14%|█▍ | 1/7 [00:00<00:01, 4.78it/s]
57%|█████▋ | 4/7 [00:00<00:00, 13.72it/s]
100%|██████████| 7/7 [00:00<00:00, 19.35it/s]
100%|██████████| 7/7 [00:00<00:00, 16.18it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/162/0.2/162_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/162/0.1/162_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/162/0.1/162_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/162/0.2/162_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/162/0.1/162_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/162/0.0/162_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/162/0.1/162_T5.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/182.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/182
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/182.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/182
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:11, 1.60s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:07, 1.27s/it]
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read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:06, 2.00s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:11<00:04, 2.19s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:14<00:02, 2.32s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 3.01s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 2.37s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/41 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/41 [00:00<00:10, 3.84it/s]
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slice data vertically and clustering: 12%|█▏ | 5/41 [00:04<00:35, 1.02it/s]
slice data vertically and clustering: 15%|█▍ | 6/41 [00:05<00:35, 1.01s/it]
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slice data vertically and clustering: 20%|█▉ | 8/41 [00:06<00:26, 1.23it/s]
slice data vertically and clustering: 22%|██▏ | 9/41 [00:06<00:22, 1.44it/s]
slice data vertically and clustering: 24%|██▍ | 10/41 [00:07<00:18, 1.70it/s]
slice data vertically and clustering: 27%|██▋ | 11/41 [00:07<00:14, 2.07it/s]
slice data vertically and clustering: 29%|██▉ | 12/41 [00:07<00:11, 2.53it/s]
slice data vertically and clustering: 32%|███▏ | 13/41 [00:07<00:09, 3.11it/s]
slice data vertically and clustering: 34%|███▍ | 14/41 [00:07<00:06, 3.90it/s]
slice data vertically and clustering: 39%|███▉ | 16/41 [00:08<00:04, 5.78it/s]
slice data vertically and clustering: 46%|████▋ | 19/41 [00:08<00:02, 9.16it/s]
slice data vertically and clustering: 56%|█████▌ | 23/41 [00:08<00:01, 14.42it/s]
slice data vertically and clustering: 76%|███████▌ | 31/41 [00:08<00:00, 27.19it/s]
slice data vertically and clustering: 100%|██████████| 41/41 [00:08<00:00, 4.87it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 81 |
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+ 0.00% | 0 / 80 | MMMMMMMMMMMMMMM 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
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+ 1.23% | 1 / 81 |
+ 1.25% | 1 / 80 |
+ 46.25% :::::::::::::::::: | 37 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 87.65% ::::::::::::::::::::::::::::::::::: | 71 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 88.89% ::::::::::::::::::::::::::::::::::: | 72 / 81 |
+ 90.12% :::::::::::::::::::::::::::::::::::: | 73 / 81 |
+ 91.25% :::::::::::::::::::::::::::::::::::: | 73 / 80 |
+ 46.25% :::::::::::::::::: | 37 / 80 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 68 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 98.75% ::::::::::::::::::::::::::::::::::::::: | 79 / 80 |
+ 1.25% | 1 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 87.65% ::::::::::::::::::::::::::::::::::: | 71 / 81 |
+ 96.30% :::::::::::::::::::::::::::::::::::::: | 78 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 88.89% ::::::::::::::::::::::::::::::::::: | 72 / 81 |
+ 90.12% :::::::::::::::::::::::::::::::::::: | 73 / 81 |
+ 91.25% :::::::::::::::::::::::::::::::::::: | 73 / 80 |
+ 46.25% :::::::::::::::::: | 37 / 80 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 68 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 98.75% ::::::::::::::::::::::::::::::::::::::: | 79 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 87.65% ::::::::::::::::::::::::::::::::::: | 71 / 81 |
+ 96.30% :::::::::::::::::::::::::::::::::::::: | 78 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 88.89% ::::::::::::::::::::::::::::::::::: | 72 / 81 |
+ 90.12% :::::::::::::::::::::::::::::::::::: | 73 / 81 |
+ 91.25% :::::::::::::::::::::::::::::::::::: | 73 / 80 |
+ 46.25% :::::::::::::::::: | 37 / 80 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 68 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 87.65% ::::::::::::::::::::::::::::::::::: | 71 / 81 |
+ 96.30% :::::::::::::::::::::::::::::::::::::: | 78 / 81 |
+ 1.23% | 1 / 81 |
+ 88.89% ::::::::::::::::::::::::::::::::::: | 72 / 81 |
+ 1.23% | 1 / 81 |
+ 88.89% ::::::::::::::::::::::::::::::::::: | 72 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 91.25% :::::::::::::::::::::::::::::::::::: | 73 / 80 |
+ 46.25% :::::::::::::::::: | 37 / 80 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 68 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 87.65% ::::::::::::::::::::::::::::::::::: | 71 / 81 |
+ 96.30% :::::::::::::::::::::::::::::::::::::: | 78 / 81 |
+ 1.23% | 1 / 81 |
+ 88.89% ::::::::::::::::::::::::::::::::::: | 72 / 81 |
+ 90.12% :::::::::::::::::::::::::::::::::::: | 73 / 81 |
+ 88.89% ::::::::::::::::::::::::::::::::::: | 72 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 91.25% :::::::::::::::::::::::::::::::::::: | 73 / 80 |
+ 46.25% :::::::::::::::::: | 37 / 80 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 68 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 87.65% ::::::::::::::::::::::::::::::::::: | 71 / 81 |
+ 96.30% :::::::::::::::::::::::::::::::::::::: | 78 / 81 |
+ 1.23% | 1 / 81 |
+ 88.89% ::::::::::::::::::::::::::::::::::: | 72 / 81 |
+ 90.12% :::::::::::::::::::::::::::::::::::: | 73 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 91.25% :::::::::::::::::::::::::::::::::::: | 73 / 80 |
+ 46.25% :::::::::::::::::: | 37 / 80 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 68 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 87.65% ::::::::::::::::::::::::::::::::::: | 71 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 88.89% ::::::::::::::::::::::::::::::::::: | 72 / 81 |
+ 90.12% :::::::::::::::::::::::::::::::::::: | 73 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 91.25% :::::::::::::::::::::::::::::::::::: | 73 / 80 |
+ 46.25% :::::::::::::::::: | 37 / 80 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 68 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 87.65% ::::::::::::::::::::::::::::::::::: | 71 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 88.89% ::::::::::::::::::::::::::::::::::: | 72 / 81 |
+ 90.12% :::::::::::::::::::::::::::::::::::: | 73 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 91.25% :::::::::::::::::::::::::::::::::::: | 73 / 80 |
+ 46.25% :::::::::::::::::: | 37 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 87.65% ::::::::::::::::::::::::::::::::::: | 71 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 88.89% ::::::::::::::::::::::::::::::::::: | 72 / 81 |
+ 90.12% :::::::::::::::::::::::::::::::::::: | 73 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 46.25% :::::::::::::::::: | 37 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 88.89% ::::::::::::::::::::::::::::::::::: | 72 / 81 |
+ 90.12% :::::::::::::::::::::::::::::::::::: | 73 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 46.25% :::::::::::::::::: | 37 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 88.89% ::::::::::::::::::::::::::::::::::: | 72 / 81 |
+ 90.12% :::::::::::::::::::::::::::::::::::: | 73 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 46.25% :::::::::::::::::: | 37 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 88.89% ::::::::::::::::::::::::::::::::::: | 72 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 46.25% :::::::::::::::::: | 37 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 46.25% :::::::::::::::::: | 37 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/1 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 1/1 [00:00<00:00, 114.40it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/1 [00:00<?, ?it/s]
100%|██████████| 1/1 [00:00<00:00, 2.78it/s]
100%|██████████| 1/1 [00:00<00:00, 2.78it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/182/0.0/182_T0.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/183.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/183
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/183.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/183
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:07, 1.06s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:03<00:10, 1.67s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:05<00:10, 2.00s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:07<00:07, 1.95s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:05, 1.98s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:11<00:04, 2.09s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:16<00:02, 2.80s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:19<00:00, 2.86s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:19<00:00, 2.38s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/41 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/41 [00:00<00:09, 4.33it/s]
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slice data vertically and clustering: 12%|█▏ | 5/41 [00:04<00:36, 1.02s/it]
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slice data vertically and clustering: 22%|██▏ | 9/41 [00:06<00:21, 1.49it/s]
slice data vertically and clustering: 24%|██▍ | 10/41 [00:07<00:16, 1.83it/s]
slice data vertically and clustering: 27%|██▋ | 11/41 [00:07<00:13, 2.23it/s]
slice data vertically and clustering: 29%|██▉ | 12/41 [00:07<00:10, 2.74it/s]
slice data vertically and clustering: 32%|███▏ | 13/41 [00:07<00:08, 3.38it/s]
slice data vertically and clustering: 37%|███▋ | 15/41 [00:07<00:05, 5.07it/s]
slice data vertically and clustering: 41%|████▏ | 17/41 [00:07<00:03, 7.15it/s]
slice data vertically and clustering: 49%|████▉ | 20/41 [00:07<00:01, 10.93it/s]
slice data vertically and clustering: 63%|██████▎ | 26/41 [00:08<00:00, 20.04it/s]
slice data vertically and clustering: 100%|██████████| 41/41 [00:08<00:00, 5.02it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 73 |
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+MMMMMMMMMMMMMMM 0.00% | 0 / 73 |
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+ 0.00% | 0 / 72 | MMMMMMMMMMMMMMM 82.19% :::::::::::::::::::::::::::::::: | 60 / 73 |
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+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 91.78% :::::::::::::::::::::::::::::::::::: | 67 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
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+ 1.39% | 1 / 72 |
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+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
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+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 78.08% ::::::::::::::::::::::::::::::: | 57 / 73 |
+ 1.37% | 1 / 73 |
+ 76.71% :::::::::::::::::::::::::::::: | 56 / 73 |
+ 91.78% :::::::::::::::::::::::::::::::::::: | 67 / 73 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 63 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 78.08% ::::::::::::::::::::::::::::::: | 57 / 73 |
+ 1.37% | 1 / 73 |
+ 76.71% :::::::::::::::::::::::::::::: | 56 / 73 |
+ 91.78% :::::::::::::::::::::::::::::::::::: | 67 / 73 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 63 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 78.08% ::::::::::::::::::::::::::::::: | 57 / 73 |
+ 1.37% | 1 / 73 |
+ 76.71% :::::::::::::::::::::::::::::: | 56 / 73 |
+ 91.78% :::::::::::::::::::::::::::::::::::: | 67 / 73 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 63 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 78.08% ::::::::::::::::::::::::::::::: | 57 / 73 |
+ 1.37% | 1 / 73 |
+ 76.71% :::::::::::::::::::::::::::::: | 56 / 73 |
+ 91.78% :::::::::::::::::::::::::::::::::::: | 67 / 73 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 78.08% ::::::::::::::::::::::::::::::: | 57 / 73 |
+ 1.37% | 1 / 73 |
+ 76.71% :::::::::::::::::::::::::::::: | 56 / 73 |
+ 91.78% :::::::::::::::::::::::::::::::::::: | 67 / 73 |
+ 1.39% | 1 / 72 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 78.08% ::::::::::::::::::::::::::::::: | 57 / 73 |
+ 1.37% | 1 / 73 |
+ 76.71% :::::::::::::::::::::::::::::: | 56 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 78.08% ::::::::::::::::::::::::::::::: | 57 / 73 |
+ 1.37% | 1 / 73 |
+ 76.71% :::::::::::::::::::::::::::::: | 56 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 78.08% ::::::::::::::::::::::::::::::: | 57 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 78.08% ::::::::::::::::::::::::::::::: | 57 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 78.08% ::::::::::::::::::::::::::::::: | 57 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 81.94% :::::::::::::::::::::::::::::::: | 59 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.39% | 1 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 72 / 72 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/7 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 7/7 [00:00<00:00, 123.20it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/7 [00:00<?, ?it/s]
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29%|██▊ | 2/7 [00:00<00:02, 2.48it/s]
100%|██████████| 7/7 [00:01<00:00, 8.98it/s]
100%|██████████| 7/7 [00:01<00:00, 6.23it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/183/0.3/183_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/183/0.0/183_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/183/0.0/183_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/183/0.0/183_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/183/0.0/183_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/183/0.0/183_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/183/0.0/183_T2.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/188.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/188
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/188.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/188
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:03, 1.93it/s]
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read in neighbouring tiles: 88%|████████▊ | 7/8 [00:11<00:01, 1.86s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:13<00:00, 2.00s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:13<00:00, 1.67s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/41 [00:00<?, ?it/s]
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slice data vertically and clustering: 22%|██▏ | 9/41 [00:02<00:07, 4.10it/s]
slice data vertically and clustering: 27%|██▋ | 11/41 [00:02<00:05, 5.90it/s]
slice data vertically and clustering: 32%|███▏ | 13/41 [00:02<00:03, 8.18it/s]
slice data vertically and clustering: 41%|████▏ | 17/41 [00:03<00:01, 13.84it/s]
slice data vertically and clustering: 71%|███████ | 29/41 [00:03<00:00, 35.67it/s]
slice data vertically and clustering: 100%|██████████| 41/41 [00:03<00:00, 13.09it/s]fitting convex hulls to clusters
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 1.92% | 1 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 1.92% | 1 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 1.92% | 1 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 52 / 52 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 | MMMMMMMMMMMMMMM 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/1 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 1/1 [00:00<00:00, 73.84it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/1 [00:00<?, ?it/s]
100%|██████████| 1/1 [00:00<00:00, 2.89it/s]
100%|██████████| 1/1 [00:00<00:00, 2.89it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/188/0.3/188_T0.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/202.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/202
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/202.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/202
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:05, 1.34it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:07, 1.33s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:03<00:06, 1.24s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:05<00:06, 1.66s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:07<00:04, 1.62s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:09<00:03, 1.83s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:11<00:01, 1.95s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:15<00:00, 2.34s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:15<00:00, 1.88s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/41 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/41 [00:00<00:04, 9.30it/s]
slice data vertically and clustering: 5%|▍ | 2/41 [00:00<00:08, 4.80it/s]
slice data vertically and clustering: 7%|▋ | 3/41 [00:00<00:14, 2.66it/s]
slice data vertically and clustering: 10%|▉ | 4/41 [00:01<00:18, 1.97it/s]
slice data vertically and clustering: 12%|█▏ | 5/41 [00:02<00:21, 1.65it/s]
slice data vertically and clustering: 15%|█▍ | 6/41 [00:03<00:21, 1.65it/s]
slice data vertically and clustering: 17%|█▋ | 7/41 [00:03<00:18, 1.81it/s]
slice data vertically and clustering: 20%|█▉ | 8/41 [00:03<00:15, 2.13it/s]
slice data vertically and clustering: 22%|██▏ | 9/41 [00:04<00:12, 2.55it/s]
slice data vertically and clustering: 24%|██▍ | 10/41 [00:04<00:10, 3.08it/s]
slice data vertically and clustering: 27%|██▋ | 11/41 [00:04<00:08, 3.73it/s]
slice data vertically and clustering: 32%|███▏ | 13/41 [00:04<00:05, 5.46it/s]
slice data vertically and clustering: 37%|███▋ | 15/41 [00:04<00:03, 7.65it/s]
slice data vertically and clustering: 49%|████▉ | 20/41 [00:04<00:01, 15.00it/s]
slice data vertically and clustering: 80%|████████ | 33/41 [00:04<00:00, 37.70it/s]
slice data vertically and clustering: 100%|██████████| 41/41 [00:04<00:00, 8.49it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 60 |
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+MMMMMMMMMMMMMMM 0.00% | 0 / 60 |
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+ 1.67% | 1 / 60 |
+ 0.00% | 0 / 59 |
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+ 0.00% | 0 / 59 |
+ 0.00% | 0 / 59 | MMMMMMMMMMMMMMM 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 79.66% ::::::::::::::::::::::::::::::: | 47 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
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+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 79.66% ::::::::::::::::::::::::::::::: | 47 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 79.66% ::::::::::::::::::::::::::::::: | 47 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 79.66% ::::::::::::::::::::::::::::::: | 47 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 79.66% ::::::::::::::::::::::::::::::: | 47 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 90.00% :::::::::::::::::::::::::::::::::::: | 54 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 79.66% ::::::::::::::::::::::::::::::: | 47 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 90.00% :::::::::::::::::::::::::::::::::::: | 54 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 79.66% ::::::::::::::::::::::::::::::: | 47 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 90.00% :::::::::::::::::::::::::::::::::::: | 54 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 79.66% ::::::::::::::::::::::::::::::: | 47 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 90.00% :::::::::::::::::::::::::::::::::::: | 54 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 90.00% :::::::::::::::::::::::::::::::::::: | 54 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 90.00% :::::::::::::::::::::::::::::::::::: | 54 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 | MMMMMMMMMMMMMMM 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/2 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 2/2 [00:00<00:00, 103.46it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/2 [00:00<?, ?it/s]
50%|█████ | 1/2 [00:00<00:00, 4.98it/s]
100%|██████████| 2/2 [00:00<00:00, 6.60it/s]
100%|██████████| 2/2 [00:00<00:00, 6.29it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/202/0.2/202_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/202/0.2/202_T1.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/first.segmented/210.ply
+Output folder: sample_playground/instance_segmented_point_clouds/first.segmented/210
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/first.segmented/210.ply
+odir sample_playground/instance_segmented_point_clouds/first.segmented/210
+tindex sample_playground/segmented_point_clouds/tiled/first.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:05, 1.34it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:08, 1.34s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:03<00:06, 1.23s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:05<00:06, 1.66s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:08<00:05, 1.82s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:09<00:03, 1.80s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:12<00:02, 2.18s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:15<00:00, 2.33s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:15<00:00, 1.92s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/41 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/41 [00:00<00:04, 8.94it/s]
slice data vertically and clustering: 5%|▍ | 2/41 [00:00<00:08, 4.71it/s]
slice data vertically and clustering: 7%|▋ | 3/41 [00:00<00:14, 2.59it/s]
slice data vertically and clustering: 10%|▉ | 4/41 [00:01<00:19, 1.94it/s]
slice data vertically and clustering: 12%|█▏ | 5/41 [00:02<00:22, 1.63it/s]
slice data vertically and clustering: 15%|█▍ | 6/41 [00:03<00:21, 1.64it/s]
slice data vertically and clustering: 17%|█▋ | 7/41 [00:03<00:19, 1.79it/s]
slice data vertically and clustering: 20%|█▉ | 8/41 [00:03<00:15, 2.10it/s]
slice data vertically and clustering: 22%|██▏ | 9/41 [00:04<00:12, 2.52it/s]
slice data vertically and clustering: 24%|██▍ | 10/41 [00:04<00:10, 3.05it/s]
slice data vertically and clustering: 27%|██▋ | 11/41 [00:04<00:08, 3.69it/s]
slice data vertically and clustering: 32%|███▏ | 13/41 [00:04<00:05, 5.41it/s]
slice data vertically and clustering: 37%|███▋ | 15/41 [00:04<00:03, 7.59it/s]
slice data vertically and clustering: 49%|████▉ | 20/41 [00:04<00:01, 14.82it/s]
slice data vertically and clustering: 80%|████████ | 33/41 [00:04<00:00, 37.36it/s]
slice data vertically and clustering: 100%|██████████| 41/41 [00:04<00:00, 8.39it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 60 |
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+ 0.00% | 0 / 59 | MMMMMMMMMMMMMMM 1.67% | 1 / 60 |
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+ 1.69% | 1 / 59 |
+ 89.83% ::::::::::::::::::::::::::::::::::: | 53 / 59 |
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+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
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+ 89.83% ::::::::::::::::::::::::::::::::::: | 53 / 59 |
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+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 91.53% :::::::::::::::::::::::::::::::::::: | 54 / 59 |
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+ 1.69% | 1 / 59 |
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+ 1.69% | 1 / 59 |
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+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 91.53% :::::::::::::::::::::::::::::::::::: | 54 / 59 |
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+ 1.69% | 1 / 59 |
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+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 91.53% :::::::::::::::::::::::::::::::::::: | 54 / 59 |
+ 89.83% ::::::::::::::::::::::::::::::::::: | 53 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 91.53% :::::::::::::::::::::::::::::::::::: | 54 / 59 |
+ 89.83% ::::::::::::::::::::::::::::::::::: | 53 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 91.53% :::::::::::::::::::::::::::::::::::: | 54 / 59 |
+ 89.83% ::::::::::::::::::::::::::::::::::: | 53 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 89.83% ::::::::::::::::::::::::::::::::::: | 53 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/2 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 2/2 [00:00<00:00, 78.61it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/2 [00:00<?, ?it/s]
50%|█████ | 1/2 [00:00<00:00, 4.29it/s]
100%|██████████| 2/2 [00:00<00:00, 6.10it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/210/0.4/210_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/first.segmented/210/0.4/210_T1.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/002.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/002
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/002.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/002
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:05, 1.36it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:07, 1.23s/it]
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read in neighbouring tiles: 62%|██████▎ | 5/8 [00:08<00:05, 1.86s/it]
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read in neighbouring tiles: 88%|████████▊ | 7/8 [00:13<00:02, 2.37s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:16<00:00, 2.51s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:16<00:00, 2.06s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/39 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/39 [00:00<00:17, 2.23it/s]
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slice data vertically and clustering: 21%|██ | 8/39 [00:08<00:30, 1.01it/s]
slice data vertically and clustering: 23%|██▎ | 9/39 [00:09<00:25, 1.20it/s]
slice data vertically and clustering: 26%|██▌ | 10/39 [00:09<00:19, 1.45it/s]
slice data vertically and clustering: 28%|██▊ | 11/39 [00:09<00:15, 1.82it/s]
slice data vertically and clustering: 31%|███ | 12/39 [00:10<00:11, 2.26it/s]
slice data vertically and clustering: 33%|███▎ | 13/39 [00:10<00:09, 2.77it/s]
slice data vertically and clustering: 36%|███▌ | 14/39 [00:10<00:07, 3.38it/s]
slice data vertically and clustering: 38%|███▊ | 15/39 [00:10<00:05, 4.17it/s]
slice data vertically and clustering: 44%|████▎ | 17/39 [00:10<00:03, 6.07it/s]
slice data vertically and clustering: 49%|████▊ | 19/39 [00:10<00:02, 8.30it/s]
slice data vertically and clustering: 56%|█████▋ | 22/39 [00:10<00:01, 12.34it/s]
slice data vertically and clustering: 74%|███████▍ | 29/39 [00:10<00:00, 24.46it/s]
slice data vertically and clustering: 100%|██████████| 39/39 [00:10<00:00, 3.55it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 88 |
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+ 1.15% | 1 / 87 |
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+ 1.15% | 1 / 87 |
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+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 64.77% ::::::::::::::::::::::::: | 57 / 88 |
+ 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 1.15% | 1 / 87 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
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+ 1.15% | 1 / 87 |
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+ 1.14% | 1 / 88 |
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+ 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 1.15% | 1 / 87 |
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+ 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
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+ 1.14% | 1 / 88 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
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+ 1.14% | 1 / 88 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.91% ::::::::::::::::::::::::::::::::: | 73 / 87 |
+ 83.91% ::::::::::::::::::::::::::::::::: | 73 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 89.66% ::::::::::::::::::::::::::::::::::: | 78 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.91% ::::::::::::::::::::::::::::::::: | 73 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.91% ::::::::::::::::::::::::::::::::: | 73 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 84.09% ::::::::::::::::::::::::::::::::: | 74 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 53.41% ::::::::::::::::::::: | 47 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 53.41% ::::::::::::::::::::: | 47 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 33.33% ::::::::::::: | 1 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/13 [00:00<?, ?it/s]
writing stems to file: 38%|███▊ | 5/13 [00:00<00:00, 45.63it/s]
writing stems to file: 100%|██████████| 13/13 [00:00<00:00, 66.43it/s]
+adding leaves to stems, this may take a while...
+
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23%|██▎ | 3/13 [00:00<00:01, 6.22it/s]
31%|███ | 4/13 [00:00<00:01, 6.52it/s]
46%|████▌ | 6/13 [00:00<00:00, 9.01it/s]
62%|██████▏ | 8/13 [00:01<00:00, 8.68it/s]
69%|██████▉ | 9/13 [00:01<00:00, 8.32it/s]
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85%|████████▍ | 11/13 [00:01<00:00, 7.93it/s]
100%|██████████| 13/13 [00:01<00:00, 8.61it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/002/0.0/002_T9.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/002/0.0/002_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/002/0.2/002_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/002/0.1/002_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/002/0.3/002_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/002/0.0/002_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/002/0.3/002_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/002/0.1/002_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/002/0.0/002_T10.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/002/0.1/002_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/002/0.0/002_T12.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/002/0.0/002_T11.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/002/0.1/002_T6.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/003.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/003
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/003.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/003
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:06, 1.07it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:03<00:11, 1.99s/it]
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read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:05, 1.94s/it]
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read in neighbouring tiles: 88%|████████▊ | 7/8 [00:15<00:02, 2.60s/it]
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read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 2.33s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/39 [00:00<?, ?it/s]
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slice data vertically and clustering: 21%|██ | 8/39 [00:10<00:36, 1.18s/it]
slice data vertically and clustering: 23%|██▎ | 9/39 [00:10<00:29, 1.03it/s]
slice data vertically and clustering: 26%|██▌ | 10/39 [00:11<00:22, 1.28it/s]
slice data vertically and clustering: 28%|██▊ | 11/39 [00:11<00:17, 1.62it/s]
slice data vertically and clustering: 31%|███ | 12/39 [00:11<00:13, 2.04it/s]
slice data vertically and clustering: 33%|███▎ | 13/39 [00:11<00:10, 2.55it/s]
slice data vertically and clustering: 36%|███▌ | 14/39 [00:12<00:07, 3.13it/s]
slice data vertically and clustering: 38%|███▊ | 15/39 [00:12<00:06, 3.91it/s]
slice data vertically and clustering: 44%|████▎ | 17/39 [00:12<00:03, 5.71it/s]
slice data vertically and clustering: 49%|████▊ | 19/39 [00:12<00:02, 7.70it/s]
slice data vertically and clustering: 56%|█████▋ | 22/39 [00:12<00:01, 11.38it/s]
slice data vertically and clustering: 72%|███████▏ | 28/39 [00:12<00:00, 20.67it/s]
slice data vertically and clustering: 100%|██████████| 39/39 [00:12<00:00, 3.07it/s]fitting convex hulls to clusters
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 70.79% :::::::::::::::::::::::::::: | 63 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 86.36% :::::::::::::::::::::::::::::::::: | 76 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 70.79% :::::::::::::::::::::::::::: | 63 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 86.36% :::::::::::::::::::::::::::::::::: | 76 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 70.79% :::::::::::::::::::::::::::: | 63 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/3 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 3/3 [00:00<00:00, 70.09it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/3 [00:00<?, ?it/s]
33%|███▎ | 1/3 [00:00<00:00, 2.43it/s]
67%|██████▋ | 2/3 [00:00<00:00, 4.29it/s]
100%|██████████| 3/3 [00:00<00:00, 5.10it/s]
100%|██████████| 3/3 [00:00<00:00, 4.46it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/003/0.0/003_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/003/0.0/003_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/003/0.2/003_T0.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/013.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/013
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/013.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/013
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:11, 1.60s/it]
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read in neighbouring tiles: 62%|██████▎ | 5/8 [00:10<00:06, 2.17s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:12<00:04, 2.16s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:16<00:02, 2.81s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:19<00:00, 3.05s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:19<00:00, 2.50s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/40 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▎ | 1/40 [00:00<00:18, 2.06it/s]
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slice data vertically and clustering: 10%|█ | 4/40 [00:05<01:02, 1.75s/it]
slice data vertically and clustering: 12%|█▎ | 5/40 [00:08<01:08, 1.95s/it]
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slice data vertically and clustering: 18%|█▊ | 7/40 [00:11<00:53, 1.63s/it]
slice data vertically and clustering: 20%|██ | 8/40 [00:11<00:44, 1.40s/it]
slice data vertically and clustering: 22%|██▎ | 9/40 [00:12<00:35, 1.14s/it]
slice data vertically and clustering: 25%|██▌ | 10/40 [00:12<00:27, 1.08it/s]
slice data vertically and clustering: 28%|██▊ | 11/40 [00:13<00:20, 1.39it/s]
slice data vertically and clustering: 30%|███ | 12/40 [00:13<00:15, 1.77it/s]
slice data vertically and clustering: 32%|███▎ | 13/40 [00:13<00:12, 2.23it/s]
slice data vertically and clustering: 35%|███▌ | 14/40 [00:13<00:09, 2.80it/s]
slice data vertically and clustering: 38%|███▊ | 15/40 [00:13<00:07, 3.47it/s]
slice data vertically and clustering: 42%|████▎ | 17/40 [00:14<00:04, 5.24it/s]
slice data vertically and clustering: 48%|████▊ | 19/40 [00:14<00:02, 7.33it/s]
slice data vertically and clustering: 55%|█████▌ | 22/40 [00:14<00:01, 11.14it/s]
slice data vertically and clustering: 70%|███████ | 28/40 [00:14<00:00, 20.33it/s]
slice data vertically and clustering: 100%|██████████| 40/40 [00:14<00:00, 2.78it/s]fitting convex hulls to clusters
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 16.67% :::::: | 1 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 2 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/6 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 6/6 [00:00<00:00, 82.21it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/6 [00:00<?, ?it/s]
17%|█▋ | 1/6 [00:00<00:01, 4.33it/s]
50%|█████ | 3/6 [00:00<00:00, 9.47it/s]
83%|████████▎ | 5/6 [00:00<00:00, 10.95it/s]
100%|██████████| 6/6 [00:00<00:00, 10.94it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/013/0.3/013_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/013/0.1/013_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/013/0.3/013_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/013/0.2/013_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/013/0.3/013_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/013/0.0/013_T5.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/015.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/015
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/015.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/015
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:06, 1.06it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:06, 1.12s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:03<00:05, 1.19s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:06<00:07, 1.77s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:07, 2.44s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:13<00:05, 2.81s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:16<00:03, 3.03s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 3.24s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 2.56s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/40 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▎ | 1/40 [00:00<00:20, 1.91it/s]
slice data vertically and clustering: 5%|▌ | 2/40 [00:01<00:32, 1.16it/s]
slice data vertically and clustering: 8%|▊ | 3/40 [00:03<00:51, 1.41s/it]
slice data vertically and clustering: 10%|█ | 4/40 [00:06<01:06, 1.85s/it]
slice data vertically and clustering: 12%|█▎ | 5/40 [00:08<01:11, 2.05s/it]
slice data vertically and clustering: 15%|█▌ | 6/40 [00:10<01:05, 1.93s/it]
slice data vertically and clustering: 18%|█▊ | 7/40 [00:11<00:56, 1.70s/it]
slice data vertically and clustering: 20%|██ | 8/40 [00:12<00:46, 1.46s/it]
slice data vertically and clustering: 22%|██▎ | 9/40 [00:13<00:37, 1.19s/it]
slice data vertically and clustering: 25%|██▌ | 10/40 [00:13<00:28, 1.04it/s]
slice data vertically and clustering: 28%|██▊ | 11/40 [00:13<00:22, 1.31it/s]
slice data vertically and clustering: 30%|███ | 12/40 [00:14<00:16, 1.67it/s]
slice data vertically and clustering: 32%|███▎ | 13/40 [00:14<00:12, 2.11it/s]
slice data vertically and clustering: 35%|███▌ | 14/40 [00:14<00:09, 2.64it/s]
slice data vertically and clustering: 38%|███▊ | 15/40 [00:14<00:07, 3.29it/s]
slice data vertically and clustering: 42%|████▎ | 17/40 [00:14<00:04, 4.94it/s]
slice data vertically and clustering: 48%|████▊ | 19/40 [00:14<00:03, 6.82it/s]
slice data vertically and clustering: 55%|█████▌ | 22/40 [00:14<00:01, 10.27it/s]
slice data vertically and clustering: 68%|██████▊ | 27/40 [00:15<00:00, 17.28it/s]
slice data vertically and clustering: 100%|██████████| 40/40 [00:15<00:00, 2.64it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 106 |
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+ 0.00% | 0 / 105 | MMMMMMMMMMMMMMM 50.94% :::::::::::::::::::: | 54 / 106 |
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+ 0.95% | 1 / 105 |
+ 0.95% | 1 / 105 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 59.43% ::::::::::::::::::::::: | 63 / 106 |
+ 72.38% :::::::::::::::::::::::::::: | 76 / 105 |
+ 59.05% ::::::::::::::::::::::: | 62 / 105 |
+ 66.67% :::::::::::::::::::::::::: | 70 / 105 |
+ 66.67% :::::::::::::::::::::::::: | 70 / 105 |
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+ 63.81% ::::::::::::::::::::::::: | 67 / 105 |
+ 76.19% :::::::::::::::::::::::::::::: | 80 / 105 |
+ 72.38% :::::::::::::::::::::::::::: | 76 / 105 |
+ 0.95% | 1 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 80.00% :::::::::::::::::::::::::::::::: | 84 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 80.00% :::::::::::::::::::::::::::::::: | 84 / 105 |
+ 77.14% :::::::::::::::::::::::::::::: | 81 / 105 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 59.43% ::::::::::::::::::::::: | 63 / 106 |
+ 72.38% :::::::::::::::::::::::::::: | 76 / 105 |
+ 59.05% ::::::::::::::::::::::: | 62 / 105 |
+ 66.67% :::::::::::::::::::::::::: | 70 / 105 |
+ 66.67% :::::::::::::::::::::::::: | 70 / 105 |
+ 68.57% ::::::::::::::::::::::::::: | 72 / 105 |
+ 63.81% ::::::::::::::::::::::::: | 67 / 105 |
+ 76.19% :::::::::::::::::::::::::::::: | 80 / 105 |
+ 72.38% :::::::::::::::::::::::::::: | 76 / 105 |
+ 0.95% | 1 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 80.00% :::::::::::::::::::::::::::::::: | 84 / 105 |
+ 77.14% :::::::::::::::::::::::::::::: | 81 / 105 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 59.43% ::::::::::::::::::::::: | 63 / 106 |
+ 72.38% :::::::::::::::::::::::::::: | 76 / 105 |
+ 59.05% ::::::::::::::::::::::: | 62 / 105 |
+ 66.67% :::::::::::::::::::::::::: | 70 / 105 |
+ 66.67% :::::::::::::::::::::::::: | 70 / 105 |
+ 68.57% ::::::::::::::::::::::::::: | 72 / 105 |
+ 63.81% ::::::::::::::::::::::::: | 67 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 72.38% :::::::::::::::::::::::::::: | 76 / 105 |
+ 0.95% | 1 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 80.00% :::::::::::::::::::::::::::::::: | 84 / 105 |
+ 77.14% :::::::::::::::::::::::::::::: | 81 / 105 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 59.43% ::::::::::::::::::::::: | 63 / 106 |
+ 72.38% :::::::::::::::::::::::::::: | 76 / 105 |
+ 59.05% ::::::::::::::::::::::: | 62 / 105 |
+ 66.67% :::::::::::::::::::::::::: | 70 / 105 |
+ 66.67% :::::::::::::::::::::::::: | 70 / 105 |
+ 68.57% ::::::::::::::::::::::::::: | 72 / 105 |
+ 63.81% ::::::::::::::::::::::::: | 67 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 0.95% | 1 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 80.00% :::::::::::::::::::::::::::::::: | 84 / 105 |
+ 77.14% :::::::::::::::::::::::::::::: | 81 / 105 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 72.38% :::::::::::::::::::::::::::: | 76 / 105 |
+ 59.05% ::::::::::::::::::::::: | 62 / 105 |
+ 66.67% :::::::::::::::::::::::::: | 70 / 105 |
+ 66.67% :::::::::::::::::::::::::: | 70 / 105 |
+ 68.57% ::::::::::::::::::::::::::: | 72 / 105 |
+ 63.81% ::::::::::::::::::::::::: | 67 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 0.95% | 1 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 80.00% :::::::::::::::::::::::::::::::: | 84 / 105 |
+ 77.14% :::::::::::::::::::::::::::::: | 81 / 105 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 72.38% :::::::::::::::::::::::::::: | 76 / 105 |
+ 59.05% ::::::::::::::::::::::: | 62 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 66.67% :::::::::::::::::::::::::: | 70 / 105 |
+ 68.57% ::::::::::::::::::::::::::: | 72 / 105 |
+ 63.81% ::::::::::::::::::::::::: | 67 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 0.95% | 1 / 105 |
+ 75.24% :::::::::::::::::::::::::::::: | 79 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 80.00% :::::::::::::::::::::::::::::::: | 84 / 105 |
+ 77.14% :::::::::::::::::::::::::::::: | 81 / 105 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 72.38% :::::::::::::::::::::::::::: | 76 / 105 |
+ 59.05% ::::::::::::::::::::::: | 62 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 66.67% :::::::::::::::::::::::::: | 70 / 105 |
+ 68.57% ::::::::::::::::::::::::::: | 72 / 105 |
+ 63.81% ::::::::::::::::::::::::: | 67 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 0.95% | 1 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 80.00% :::::::::::::::::::::::::::::::: | 84 / 105 |
+ 77.14% :::::::::::::::::::::::::::::: | 81 / 105 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 72.38% :::::::::::::::::::::::::::: | 76 / 105 |
+ 59.05% ::::::::::::::::::::::: | 62 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 66.67% :::::::::::::::::::::::::: | 70 / 105 |
+ 68.57% ::::::::::::::::::::::::::: | 72 / 105 |
+ 63.81% ::::::::::::::::::::::::: | 67 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 0.95% | 1 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 80.00% :::::::::::::::::::::::::::::::: | 84 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 72.38% :::::::::::::::::::::::::::: | 76 / 105 |
+ 59.05% ::::::::::::::::::::::: | 62 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 68.57% ::::::::::::::::::::::::::: | 72 / 105 |
+ 63.81% ::::::::::::::::::::::::: | 67 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 0.95% | 1 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 80.00% :::::::::::::::::::::::::::::::: | 84 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 72.38% :::::::::::::::::::::::::::: | 76 / 105 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 73.33% ::::::::::::::::::::::::::::: | 77 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 67.62% ::::::::::::::::::::::::::: | 71 / 105 |
+ 80.00% :::::::::::::::::::::::::::::::: | 84 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 72.38% :::::::::::::::::::::::::::: | 76 / 105 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 73.33% ::::::::::::::::::::::::::::: | 77 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 80.00% :::::::::::::::::::::::::::::::: | 84 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 72.38% :::::::::::::::::::::::::::: | 76 / 105 |
+ 59.05% ::::::::::::::::::::::: | 62 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 73.33% ::::::::::::::::::::::::::::: | 77 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 73.33% ::::::::::::::::::::::::::::: | 77 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 73.33% ::::::::::::::::::::::::::::: | 77 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 105 / 105 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 0.00% | 0 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/5 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 5/5 [00:00<00:00, 71.16it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/5 [00:00<?, ?it/s]
20%|██ | 1/5 [00:00<00:01, 3.66it/s]
40%|████ | 2/5 [00:00<00:00, 4.68it/s]
80%|████████ | 4/5 [00:00<00:00, 7.41it/s]
100%|██████████| 5/5 [00:00<00:00, 7.30it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/015/0.1/015_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/015/0.2/015_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/015/0.0/015_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/015/0.3/015_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/015/0.1/015_T2.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/023.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/023
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/023.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/023
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:02<00:14, 2.05s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:03<00:10, 1.73s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:05<00:07, 1.60s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:07<00:07, 1.76s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:06, 2.01s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:11<00:04, 2.19s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:14<00:02, 2.40s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.51s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.20s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/39 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/39 [00:00<00:10, 3.48it/s]
slice data vertically and clustering: 5%|▌ | 2/39 [00:00<00:17, 2.16it/s]
slice data vertically and clustering: 8%|▊ | 3/39 [00:02<00:31, 1.13it/s]
slice data vertically and clustering: 10%|█ | 4/39 [00:03<00:41, 1.19s/it]
slice data vertically and clustering: 13%|█▎ | 5/39 [00:05<00:44, 1.32s/it]
slice data vertically and clustering: 15%|█▌ | 6/39 [00:06<00:42, 1.29s/it]
slice data vertically and clustering: 18%|█▊ | 7/39 [00:07<00:36, 1.13s/it]
slice data vertically and clustering: 21%|██ | 8/39 [00:08<00:29, 1.04it/s]
slice data vertically and clustering: 23%|██▎ | 9/39 [00:08<00:24, 1.23it/s]
slice data vertically and clustering: 26%|██▌ | 10/39 [00:08<00:19, 1.49it/s]
slice data vertically and clustering: 28%|██▊ | 11/39 [00:09<00:15, 1.85it/s]
slice data vertically and clustering: 31%|███ | 12/39 [00:09<00:11, 2.29it/s]
slice data vertically and clustering: 33%|███▎ | 13/39 [00:09<00:09, 2.81it/s]
slice data vertically and clustering: 36%|███▌ | 14/39 [00:09<00:07, 3.42it/s]
slice data vertically and clustering: 38%|███▊ | 15/39 [00:09<00:05, 4.14it/s]
slice data vertically and clustering: 44%|████▎ | 17/39 [00:09<00:03, 6.05it/s]
slice data vertically and clustering: 49%|████▊ | 19/39 [00:10<00:02, 8.28it/s]
slice data vertically and clustering: 56%|█████▋ | 22/39 [00:10<00:01, 12.36it/s]
slice data vertically and clustering: 74%|███████▍ | 29/39 [00:10<00:00, 24.56it/s]
slice data vertically and clustering: 100%|██████████| 39/39 [00:10<00:00, 3.78it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 98 |
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+ 0.00% | 0 / 97 |
+MMMMMMMMMMMMMMM 1.02% | 1 / 98 |
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+ 0.00% | 0 / 97 |
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+ 0.00% | 0 / 97 |
+ 0.00% | 0 / 97 | MMMMMMMMMMMMMMM 1.02% | 1 / 98 |
+ 1.02% | 1 / 98 |
+ 36.73% :::::::::::::: | 36 / 98 |
+ 1.02% | 1 / 98 |
+ 1.02% | 1 / 98 |
+ 1.02% | 1 / 98 |
+ 1.02% | 1 / 98 |
+ 1.02% | 1 / 98 |
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+ 1.03% | 1 / 97 |
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+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 72.45% :::::::::::::::::::::::::::: | 71 / 98 |
+ 36.73% :::::::::::::: | 36 / 98 |
+ 71.43% :::::::::::::::::::::::::::: | 70 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 80.61% :::::::::::::::::::::::::::::::: | 79 / 98 |
+ 1.02% | 1 / 98 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 1.03% | 1 / 97 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
+ 1.03% | 1 / 97 |
+ 76.29% :::::::::::::::::::::::::::::: | 74 / 97 |
+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 36.73% :::::::::::::: | 36 / 98 |
+ 71.43% :::::::::::::::::::::::::::: | 70 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 80.61% :::::::::::::::::::::::::::::::: | 79 / 98 |
+ 1.02% | 1 / 98 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 1.03% | 1 / 97 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
+ 1.03% | 1 / 97 |
+ 76.29% :::::::::::::::::::::::::::::: | 74 / 97 |
+ 1.03% | 1 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 1.03% | 1 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 36.73% :::::::::::::: | 36 / 98 |
+ 71.43% :::::::::::::::::::::::::::: | 70 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 80.61% :::::::::::::::::::::::::::::::: | 79 / 98 |
+ 1.02% | 1 / 98 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 1.03% | 1 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 76.29% :::::::::::::::::::::::::::::: | 74 / 97 |
+ 76.29% :::::::::::::::::::::::::::::: | 74 / 97 |
+ 74.23% ::::::::::::::::::::::::::::: | 72 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 71.43% :::::::::::::::::::::::::::: | 70 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 80.61% :::::::::::::::::::::::::::::::: | 79 / 98 |
+ 1.02% | 1 / 98 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 1.03% | 1 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 76.29% :::::::::::::::::::::::::::::: | 74 / 97 |
+ 76.29% :::::::::::::::::::::::::::::: | 74 / 97 |
+ 74.23% ::::::::::::::::::::::::::::: | 72 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 71.43% :::::::::::::::::::::::::::: | 70 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 80.61% :::::::::::::::::::::::::::::::: | 79 / 98 |
+ 1.02% | 1 / 98 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 1.03% | 1 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 76.29% :::::::::::::::::::::::::::::: | 74 / 97 |
+ 76.29% :::::::::::::::::::::::::::::: | 74 / 97 |
+ 74.23% ::::::::::::::::::::::::::::: | 72 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 80.61% :::::::::::::::::::::::::::::::: | 79 / 98 |
+ 1.02% | 1 / 98 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 1.03% | 1 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 76.29% :::::::::::::::::::::::::::::: | 74 / 97 |
+ 76.29% :::::::::::::::::::::::::::::: | 74 / 97 |
+ 74.23% ::::::::::::::::::::::::::::: | 72 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 80.61% :::::::::::::::::::::::::::::::: | 79 / 98 |
+ 1.02% | 1 / 98 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 1.03% | 1 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 76.29% :::::::::::::::::::::::::::::: | 74 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 74.23% ::::::::::::::::::::::::::::: | 72 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 80.61% :::::::::::::::::::::::::::::::: | 79 / 98 |
+ 1.02% | 1 / 98 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 1.03% | 1 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 76.29% :::::::::::::::::::::::::::::: | 74 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 74.23% ::::::::::::::::::::::::::::: | 72 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 1.03% | 1 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 76.29% :::::::::::::::::::::::::::::: | 74 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 74.23% ::::::::::::::::::::::::::::: | 72 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 1.03% | 1 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 76.29% :::::::::::::::::::::::::::::: | 74 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 74.23% ::::::::::::::::::::::::::::: | 72 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 69.07% ::::::::::::::::::::::::::: | 67 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 76.29% :::::::::::::::::::::::::::::: | 74 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 69.07% ::::::::::::::::::::::::::: | 67 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 76.29% :::::::::::::::::::::::::::::: | 74 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 69.07% ::::::::::::::::::::::::::: | 67 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 69.07% ::::::::::::::::::::::::::: | 67 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 69.07% ::::::::::::::::::::::::::: | 67 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 | MMMMMMMMMMMMMMM 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
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+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/21 [00:00<?, ?it/s]
writing stems to file: 43%|████▎ | 9/21 [00:00<00:00, 83.16it/s]
writing stems to file: 100%|██████████| 21/21 [00:00<00:00, 103.05it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/21 [00:00<?, ?it/s]
5%|▍ | 1/21 [00:00<00:04, 4.39it/s]
14%|█▍ | 3/21 [00:00<00:02, 8.42it/s]
24%|██▍ | 5/21 [00:00<00:01, 10.15it/s]
33%|███▎ | 7/21 [00:00<00:01, 10.42it/s]
48%|████▊ | 10/21 [00:00<00:00, 14.56it/s]
62%|██████▏ | 13/21 [00:00<00:00, 18.30it/s]
76%|███████▌ | 16/21 [00:01<00:00, 19.29it/s]
95%|█████████▌| 20/21 [00:01<00:00, 23.60it/s]
100%|██████████| 21/21 [00:01<00:00, 17.15it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.2/023_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.1/023_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.0/023_T12.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.2/023_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.1/023_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.1/023_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.2/023_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.1/023_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.0/023_T16.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.0/023_T15.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.0/023_T20.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.0/023_T9.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.2/023_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.0/023_T18.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.0/023_T19.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.0/023_T14.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.0/023_T13.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.0/023_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.0/023_T10.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.0/023_T17.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/023/0.0/023_T11.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/024.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/024
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/024.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/024
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:12, 1.77s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:03<00:08, 1.46s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:04<00:08, 1.62s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:06<00:06, 1.71s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:05, 1.97s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:11<00:04, 2.16s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:14<00:02, 2.28s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.48s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.13s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/39 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/39 [00:00<00:10, 3.58it/s]
slice data vertically and clustering: 5%|▌ | 2/39 [00:00<00:16, 2.19it/s]
slice data vertically and clustering: 8%|▊ | 3/39 [00:02<00:31, 1.14it/s]
slice data vertically and clustering: 10%|█ | 4/39 [00:03<00:41, 1.18s/it]
slice data vertically and clustering: 13%|█▎ | 5/39 [00:05<00:44, 1.31s/it]
slice data vertically and clustering: 15%|█▌ | 6/39 [00:06<00:42, 1.28s/it]
slice data vertically and clustering: 18%|█▊ | 7/39 [00:07<00:35, 1.12s/it]
slice data vertically and clustering: 21%|██ | 8/39 [00:08<00:29, 1.05it/s]
slice data vertically and clustering: 23%|██▎ | 9/39 [00:08<00:24, 1.24it/s]
slice data vertically and clustering: 26%|██▌ | 10/39 [00:08<00:19, 1.50it/s]
slice data vertically and clustering: 28%|██▊ | 11/39 [00:09<00:15, 1.86it/s]
slice data vertically and clustering: 31%|███ | 12/39 [00:09<00:11, 2.30it/s]
slice data vertically and clustering: 33%|███▎ | 13/39 [00:09<00:09, 2.83it/s]
slice data vertically and clustering: 36%|███▌ | 14/39 [00:09<00:07, 3.45it/s]
slice data vertically and clustering: 38%|███▊ | 15/39 [00:09<00:05, 4.19it/s]
slice data vertically and clustering: 44%|████▎ | 17/39 [00:09<00:03, 6.17it/s]
slice data vertically and clustering: 51%|█████▏ | 20/39 [00:10<00:01, 9.65it/s]
slice data vertically and clustering: 64%|██████▍ | 25/39 [00:10<00:00, 16.85it/s]
slice data vertically and clustering: 100%|██████████| 39/39 [00:10<00:00, 3.82it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 98 |
+ 0.00% | 0 / 98 |
+ 0.00% | 0 / 98 |
+ 0.00% | 0 / 98 |
+ 0.00% | 0 / 98 |
+ 0.00% | 0 / 98 |
+ 0.00% | 0 / 98 |
+ 0.00% | 0 / 98 |
+ 0.00% | 0 / 98 |
+ 0.00% | 0 / 97 |
+ 0.00% | 0 / 97 |
+ 0.00% | 0 / 97 |
+ 0.00% | 0 / 97 |
+ 0.00% | 0 / 97 |
+ 0.00% | 0 / 97 |
+ 0.00% | 0 / 97 |
+MMMMMMMMMMMMMMM 0.00% | 0 / 98 |
+ 1.02% | 1 / 98 |
+ 0.00% | 0 / 98 |
+ 0.00% | 0 / 98 |
+ 0.00% | 0 / 98 |
+ 0.00% | 0 / 98 |
+ 0.00% | 0 / 98 |
+ 0.00% | 0 / 98 |
+ 0.00% | 0 / 98 |
+ 0.00% | 0 / 97 |
+ 0.00% | 0 / 97 |
+ 0.00% | 0 / 97 |
+ 0.00% | 0 / 97 |
+ 0.00% | 0 / 97 |
+ 0.00% | 0 / 97 |
+ 0.00% | 0 / 97 | MMMMMMMMMMMMMMM 1.02% | 1 / 98 |
+ 1.02% | 1 / 98 |
+ 1.02% | 1 / 98 |
+ 1.02% | 1 / 98 |
+ 52.04% :::::::::::::::::::: | 51 / 98 |
+ 1.02% | 1 / 98 |
+ 1.02% | 1 / 98 |
+ 1.02% | 1 / 98 |
+ 1.02% | 1 / 98 |
+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 | MMMMMMMMMMMMMMM 65.31% :::::::::::::::::::::::::: | 64 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 74.49% ::::::::::::::::::::::::::::: | 73 / 98 |
+ 52.04% :::::::::::::::::::: | 51 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 82.65% ::::::::::::::::::::::::::::::::: | 81 / 98 |
+ 1.02% | 1 / 98 |
+ 1.02% | 1 / 98 |
+ 1.03% | 1 / 97 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
+ 78.35% ::::::::::::::::::::::::::::::: | 76 / 97 |
+ 1.03% | 1 / 97 |
+ 1.03% | 1 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 1.03% | 1 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 74.49% ::::::::::::::::::::::::::::: | 73 / 98 |
+ 52.04% :::::::::::::::::::: | 51 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 82.65% ::::::::::::::::::::::::::::::::: | 81 / 98 |
+ 1.02% | 1 / 98 |
+ 1.02% | 1 / 98 |
+ 1.03% | 1 / 97 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
+ 78.35% ::::::::::::::::::::::::::::::: | 76 / 97 |
+ 1.03% | 1 / 97 |
+ 84.54% ::::::::::::::::::::::::::::::::: | 82 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 1.03% | 1 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 74.49% ::::::::::::::::::::::::::::: | 73 / 98 |
+ 52.04% :::::::::::::::::::: | 51 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 82.65% ::::::::::::::::::::::::::::::::: | 81 / 98 |
+ 1.02% | 1 / 98 |
+ 66.33% :::::::::::::::::::::::::: | 65 / 98 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
+ 78.35% ::::::::::::::::::::::::::::::: | 76 / 97 |
+ 1.03% | 1 / 97 |
+ 84.54% ::::::::::::::::::::::::::::::::: | 82 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 74.49% ::::::::::::::::::::::::::::: | 73 / 98 |
+ 52.04% :::::::::::::::::::: | 51 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 82.65% ::::::::::::::::::::::::::::::::: | 81 / 98 |
+ 1.02% | 1 / 98 |
+ 66.33% :::::::::::::::::::::::::: | 65 / 98 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 78.35% ::::::::::::::::::::::::::::::: | 76 / 97 |
+ 1.03% | 1 / 97 |
+ 84.54% ::::::::::::::::::::::::::::::::: | 82 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 52.04% :::::::::::::::::::: | 51 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 82.65% ::::::::::::::::::::::::::::::::: | 81 / 98 |
+ 1.02% | 1 / 98 |
+ 66.33% :::::::::::::::::::::::::: | 65 / 98 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 78.35% ::::::::::::::::::::::::::::::: | 76 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 84.54% ::::::::::::::::::::::::::::::::: | 82 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 52.04% :::::::::::::::::::: | 51 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 82.65% ::::::::::::::::::::::::::::::::: | 81 / 98 |
+ 1.02% | 1 / 98 |
+ 66.33% :::::::::::::::::::::::::: | 65 / 98 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 84.54% ::::::::::::::::::::::::::::::::: | 82 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 52.04% :::::::::::::::::::: | 51 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 82.65% ::::::::::::::::::::::::::::::::: | 81 / 98 |
+ 72.45% :::::::::::::::::::::::::::: | 71 / 98 |
+ 66.33% :::::::::::::::::::::::::: | 65 / 98 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 84.54% ::::::::::::::::::::::::::::::::: | 82 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 82.65% ::::::::::::::::::::::::::::::::: | 81 / 98 |
+ 72.45% :::::::::::::::::::::::::::: | 71 / 98 |
+ 66.33% :::::::::::::::::::::::::: | 65 / 98 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 84.54% ::::::::::::::::::::::::::::::::: | 82 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 82.65% ::::::::::::::::::::::::::::::::: | 81 / 98 |
+ 72.45% :::::::::::::::::::::::::::: | 71 / 98 |
+ 66.33% :::::::::::::::::::::::::: | 65 / 98 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 84.54% ::::::::::::::::::::::::::::::::: | 82 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 72.45% :::::::::::::::::::::::::::: | 71 / 98 |
+ 66.33% :::::::::::::::::::::::::: | 65 / 98 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 84.54% ::::::::::::::::::::::::::::::::: | 82 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 87.63% ::::::::::::::::::::::::::::::::::: | 85 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 72.45% :::::::::::::::::::::::::::: | 71 / 98 |
+ 66.33% :::::::::::::::::::::::::: | 65 / 98 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 84.54% ::::::::::::::::::::::::::::::::: | 82 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 72.45% :::::::::::::::::::::::::::: | 71 / 98 |
+ 66.33% :::::::::::::::::::::::::: | 65 / 98 |
+ 80.41% :::::::::::::::::::::::::::::::: | 78 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 72.45% :::::::::::::::::::::::::::: | 71 / 98 |
+ 66.33% :::::::::::::::::::::::::: | 65 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 75.26% :::::::::::::::::::::::::::::: | 73 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 72.45% :::::::::::::::::::::::::::: | 71 / 98 |
+ 66.33% :::::::::::::::::::::::::: | 65 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 72.45% :::::::::::::::::::::::::::: | 71 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 97 / 97 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
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+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/14 [00:00<?, ?it/s]
writing stems to file: 43%|████▎ | 6/14 [00:00<00:00, 55.53it/s]
writing stems to file: 100%|██████████| 14/14 [00:00<00:00, 77.93it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/14 [00:00<?, ?it/s]
7%|▋ | 1/14 [00:00<00:07, 1.80it/s]
14%|█▍ | 2/14 [00:00<00:03, 3.17it/s]
29%|██▊ | 4/14 [00:00<00:01, 6.08it/s]
43%|████▎ | 6/14 [00:00<00:00, 8.25it/s]
57%|█████▋ | 8/14 [00:01<00:00, 10.14it/s]
79%|███████▊ | 11/14 [00:01<00:00, 13.82it/s]
93%|█████████▎| 13/14 [00:01<00:00, 14.49it/s]
100%|██████████| 14/14 [00:01<00:00, 10.05it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/024/0.3/024_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/024/0.2/024_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/024/0.3/024_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/024/0.2/024_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/024/0.5/024_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/024/0.2/024_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/024/0.0/024_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/024/0.3/024_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/024/0.0/024_T12.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/024/0.1/024_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/024/0.0/024_T9.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/024/0.0/024_T11.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/024/0.0/024_T13.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/024/0.0/024_T10.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/026.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/026
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/026.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/026
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:13, 1.87s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:03<00:08, 1.45s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:05<00:09, 1.82s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:07<00:07, 1.95s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:05, 1.89s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:11<00:04, 2.13s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:14<00:02, 2.32s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.47s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.16s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/39 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/39 [00:00<00:09, 3.81it/s]
slice data vertically and clustering: 5%|▌ | 2/39 [00:00<00:15, 2.33it/s]
slice data vertically and clustering: 8%|▊ | 3/39 [00:02<00:29, 1.23it/s]
slice data vertically and clustering: 10%|█ | 4/39 [00:03<00:38, 1.10s/it]
slice data vertically and clustering: 13%|█▎ | 5/39 [00:05<00:41, 1.21s/it]
slice data vertically and clustering: 15%|█▌ | 6/39 [00:06<00:39, 1.19s/it]
slice data vertically and clustering: 18%|█▊ | 7/39 [00:06<00:33, 1.04s/it]
slice data vertically and clustering: 21%|██ | 8/39 [00:07<00:27, 1.11it/s]
slice data vertically and clustering: 23%|██▎ | 9/39 [00:07<00:23, 1.30it/s]
slice data vertically and clustering: 26%|██▌ | 10/39 [00:08<00:18, 1.53it/s]
slice data vertically and clustering: 28%|██▊ | 11/39 [00:08<00:14, 1.88it/s]
slice data vertically and clustering: 31%|███ | 12/39 [00:08<00:11, 2.29it/s]
slice data vertically and clustering: 33%|███▎ | 13/39 [00:09<00:09, 2.77it/s]
slice data vertically and clustering: 36%|███▌ | 14/39 [00:09<00:07, 3.33it/s]
slice data vertically and clustering: 38%|███▊ | 15/39 [00:09<00:06, 4.00it/s]
slice data vertically and clustering: 44%|████▎ | 17/39 [00:09<00:03, 5.73it/s]
slice data vertically and clustering: 49%|████▊ | 19/39 [00:09<00:02, 7.82it/s]
slice data vertically and clustering: 56%|█████▋ | 22/39 [00:09<00:01, 11.72it/s]
slice data vertically and clustering: 74%|███████▍ | 29/39 [00:09<00:00, 23.40it/s]
slice data vertically and clustering: 100%|██████████| 39/39 [00:09<00:00, 3.95it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 99 |
+MMMMMMMMMMMMMMM 1.00% | 1 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
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+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 99 | MMMMMMMMMMMMMMM 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 43.00% ::::::::::::::::: | 43 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.01% | 1 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 66.00% :::::::::::::::::::::::::: | 66 / 100 |
+ 1.00% | 1 / 100 |
+ 64.00% ::::::::::::::::::::::::: | 64 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 43.00% ::::::::::::::::: | 43 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 73.00% ::::::::::::::::::::::::::::: | 73 / 100 |
+ 74.00% ::::::::::::::::::::::::::::: | 74 / 100 |
+ 1.00% | 1 / 100 |
+ 74.00% ::::::::::::::::::::::::::::: | 74 / 100 |
+ 1.00% | 1 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 73.00% ::::::::::::::::::::::::::::: | 73 / 100 |
+ 1.00% | 1 / 100 |
+ 81.82% :::::::::::::::::::::::::::::::: | 81 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 1.00% | 1 / 100 |
+ 64.00% ::::::::::::::::::::::::: | 64 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 43.00% ::::::::::::::::: | 43 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 73.00% ::::::::::::::::::::::::::::: | 73 / 100 |
+ 74.00% ::::::::::::::::::::::::::::: | 74 / 100 |
+ 1.00% | 1 / 100 |
+ 74.00% ::::::::::::::::::::::::::::: | 74 / 100 |
+ 80.00% :::::::::::::::::::::::::::::::: | 80 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 73.00% ::::::::::::::::::::::::::::: | 73 / 100 |
+ 1.00% | 1 / 100 |
+ 81.82% :::::::::::::::::::::::::::::::: | 81 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 64.00% ::::::::::::::::::::::::: | 64 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 43.00% ::::::::::::::::: | 43 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 73.00% ::::::::::::::::::::::::::::: | 73 / 100 |
+ 74.00% ::::::::::::::::::::::::::::: | 74 / 100 |
+ 1.00% | 1 / 100 |
+ 74.00% ::::::::::::::::::::::::::::: | 74 / 100 |
+ 80.00% :::::::::::::::::::::::::::::::: | 80 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 73.00% ::::::::::::::::::::::::::::: | 73 / 100 |
+ 1.00% | 1 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 64.00% ::::::::::::::::::::::::: | 64 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 43.00% ::::::::::::::::: | 43 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 73.00% ::::::::::::::::::::::::::::: | 73 / 100 |
+ 74.00% ::::::::::::::::::::::::::::: | 74 / 100 |
+ 1.00% | 1 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 80.00% :::::::::::::::::::::::::::::::: | 80 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 73.00% ::::::::::::::::::::::::::::: | 73 / 100 |
+ 1.00% | 1 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 64.00% ::::::::::::::::::::::::: | 64 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 43.00% ::::::::::::::::: | 43 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 73.00% ::::::::::::::::::::::::::::: | 73 / 100 |
+ 74.00% ::::::::::::::::::::::::::::: | 74 / 100 |
+ 1.00% | 1 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 80.00% :::::::::::::::::::::::::::::::: | 80 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 1.00% | 1 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 64.00% ::::::::::::::::::::::::: | 64 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 43.00% ::::::::::::::::: | 43 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 73.00% ::::::::::::::::::::::::::::: | 73 / 100 |
+ 74.00% ::::::::::::::::::::::::::::: | 74 / 100 |
+ 1.00% | 1 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 80.00% :::::::::::::::::::::::::::::::: | 80 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 64.00% ::::::::::::::::::::::::: | 64 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 43.00% ::::::::::::::::: | 43 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 74.00% ::::::::::::::::::::::::::::: | 74 / 100 |
+ 1.00% | 1 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 80.00% :::::::::::::::::::::::::::::::: | 80 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 64.00% ::::::::::::::::::::::::: | 64 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 43.00% ::::::::::::::::: | 43 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 74.00% ::::::::::::::::::::::::::::: | 74 / 100 |
+ 84.00% ::::::::::::::::::::::::::::::::: | 84 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 80.00% :::::::::::::::::::::::::::::::: | 80 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 64.00% ::::::::::::::::::::::::: | 64 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 74.00% ::::::::::::::::::::::::::::: | 74 / 100 |
+ 84.00% ::::::::::::::::::::::::::::::::: | 84 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 80.00% :::::::::::::::::::::::::::::::: | 80 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 74.00% ::::::::::::::::::::::::::::: | 74 / 100 |
+ 84.00% ::::::::::::::::::::::::::::::::: | 84 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 80.00% :::::::::::::::::::::::::::::::: | 80 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 74.00% ::::::::::::::::::::::::::::: | 74 / 100 |
+ 84.00% ::::::::::::::::::::::::::::::::: | 84 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 80.00% :::::::::::::::::::::::::::::::: | 80 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 84.00% ::::::::::::::::::::::::::::::::: | 84 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 80.00% :::::::::::::::::::::::::::::::: | 80 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 84.00% ::::::::::::::::::::::::::::::::: | 84 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 59.00% ::::::::::::::::::::::: | 59 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 0.00% | 0 / 6 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 16.67% :::::: | 1 / 6 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 33.33% ::::::::::::: | 2 / 6 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 50.00% :::::::::::::::::::: | 3 / 6 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 66.67% :::::::::::::::::::::::::: | 4 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/5 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 5/5 [00:00<00:00, 109.48it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/5 [00:00<?, ?it/s]
20%|██ | 1/5 [00:00<00:00, 5.08it/s]
60%|██████ | 3/5 [00:00<00:00, 11.14it/s]
100%|██████████| 5/5 [00:00<00:00, 12.92it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/026/0.0/026_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/026/0.1/026_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/026/0.3/026_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/026/0.1/026_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/026/0.0/026_T3.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/028.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/028
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/028.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/028
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:06, 1.07it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:07, 1.22s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:04<00:07, 1.42s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:07<00:08, 2.14s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:06, 2.28s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:12<00:04, 2.39s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:15<00:02, 2.70s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 3.21s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 2.50s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/39 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/39 [00:00<00:21, 1.77it/s]
slice data vertically and clustering: 5%|▌ | 2/39 [00:01<00:34, 1.08it/s]
slice data vertically and clustering: 8%|▊ | 3/39 [00:03<00:52, 1.47s/it]
slice data vertically and clustering: 10%|█ | 4/39 [00:06<01:06, 1.89s/it]
slice data vertically and clustering: 13%|█▎ | 5/39 [00:08<01:11, 2.09s/it]
slice data vertically and clustering: 15%|█▌ | 6/39 [00:10<01:04, 1.95s/it]
slice data vertically and clustering: 18%|█▊ | 7/39 [00:11<00:54, 1.71s/it]
slice data vertically and clustering: 21%|██ | 8/39 [00:12<00:45, 1.48s/it]
slice data vertically and clustering: 23%|██▎ | 9/39 [00:13<00:36, 1.21s/it]
slice data vertically and clustering: 26%|██▌ | 10/39 [00:13<00:28, 1.02it/s]
slice data vertically and clustering: 28%|██▊ | 11/39 [00:14<00:22, 1.27it/s]
slice data vertically and clustering: 31%|███ | 12/39 [00:14<00:16, 1.60it/s]
slice data vertically and clustering: 33%|███▎ | 13/39 [00:14<00:13, 1.98it/s]
slice data vertically and clustering: 36%|███▌ | 14/39 [00:14<00:10, 2.45it/s]
slice data vertically and clustering: 38%|███▊ | 15/39 [00:14<00:07, 3.01it/s]
slice data vertically and clustering: 41%|████ | 16/39 [00:15<00:06, 3.69it/s]
slice data vertically and clustering: 44%|████▎ | 17/39 [00:15<00:04, 4.55it/s]
slice data vertically and clustering: 49%|████▊ | 19/39 [00:15<00:03, 6.54it/s]
slice data vertically and clustering: 54%|█████▍ | 21/39 [00:15<00:02, 8.77it/s]
slice data vertically and clustering: 62%|██████▏ | 24/39 [00:15<00:01, 12.71it/s]
slice data vertically and clustering: 79%|███████▉ | 31/39 [00:15<00:00, 24.61it/s]
slice data vertically and clustering: 100%|██████████| 39/39 [00:15<00:00, 2.48it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 96 |
+ 0.00% | 0 / 96 |
+ 0.00% | 0 / 96 |
+ 0.00% | 0 / 96 |
+ 0.00% | 0 / 96 |
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+ 0.00% | 0 / 96 |
+ 0.00% | 0 / 96 |
+ 0.00% | 0 / 96 |
+ 0.00% | 0 / 96 |
+ 0.00% | 0 / 95 |
+MMMMMMMMMMMMMMM 1.04% | 1 / 96 |
+ 0.00% | 0 / 96 |
+ 0.00% | 0 / 96 |
+ 0.00% | 0 / 96 |
+ 0.00% | 0 / 96 |
+ 0.00% | 0 / 96 |
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+ 0.00% | 0 / 96 |
+ 0.00% | 0 / 96 |
+ 0.00% | 0 / 96 |
+ 0.00% | 0 / 96 |
+ 0.00% | 0 / 95 | MMMMMMMMMMMMMMM 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 57.29% :::::::::::::::::::::: | 55 / 96 |
+ 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 1.05% | 1 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 57.29% :::::::::::::::::::::: | 55 / 96 |
+ 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 67.71% ::::::::::::::::::::::::::: | 65 / 96 |
+ 79.17% ::::::::::::::::::::::::::::::: | 76 / 96 |
+ 82.29% :::::::::::::::::::::::::::::::: | 79 / 96 |
+ 68.75% ::::::::::::::::::::::::::: | 66 / 96 |
+ 70.83% :::::::::::::::::::::::::::: | 68 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 1.04% | 1 / 96 |
+ 57.29% :::::::::::::::::::::: | 55 / 96 |
+ 1.04% | 1 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 80 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 57.29% :::::::::::::::::::::: | 55 / 96 |
+ 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 67.71% ::::::::::::::::::::::::::: | 65 / 96 |
+ 79.17% ::::::::::::::::::::::::::::::: | 76 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 68.75% ::::::::::::::::::::::::::: | 66 / 96 |
+ 70.83% :::::::::::::::::::::::::::: | 68 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 76.04% :::::::::::::::::::::::::::::: | 73 / 96 |
+ 57.29% :::::::::::::::::::::: | 55 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 80 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 57.29% :::::::::::::::::::::: | 55 / 96 |
+ 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 67.71% ::::::::::::::::::::::::::: | 65 / 96 |
+ 79.17% ::::::::::::::::::::::::::::::: | 76 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 68.75% ::::::::::::::::::::::::::: | 66 / 96 |
+ 70.83% :::::::::::::::::::::::::::: | 68 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 76.04% :::::::::::::::::::::::::::::: | 73 / 96 |
+ 57.29% :::::::::::::::::::::: | 55 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 57.29% :::::::::::::::::::::: | 55 / 96 |
+ 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 67.71% ::::::::::::::::::::::::::: | 65 / 96 |
+ 79.17% ::::::::::::::::::::::::::::::: | 76 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 68.75% ::::::::::::::::::::::::::: | 66 / 96 |
+ 70.83% :::::::::::::::::::::::::::: | 68 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 76.04% :::::::::::::::::::::::::::::: | 73 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 57.29% :::::::::::::::::::::: | 55 / 96 |
+ 1.04% | 1 / 96 |
+ 1.04% | 1 / 96 |
+ 67.71% ::::::::::::::::::::::::::: | 65 / 96 |
+ 79.17% ::::::::::::::::::::::::::::::: | 76 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 70.83% :::::::::::::::::::::::::::: | 68 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 76.04% :::::::::::::::::::::::::::::: | 73 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 57.29% :::::::::::::::::::::: | 55 / 96 |
+ 1.04% | 1 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 67.71% ::::::::::::::::::::::::::: | 65 / 96 |
+ 79.17% ::::::::::::::::::::::::::::::: | 76 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 70.83% :::::::::::::::::::::::::::: | 68 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 76.04% :::::::::::::::::::::::::::::: | 73 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 57.29% :::::::::::::::::::::: | 55 / 96 |
+ 1.04% | 1 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 67.71% ::::::::::::::::::::::::::: | 65 / 96 |
+ 79.17% ::::::::::::::::::::::::::::::: | 76 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 70.83% :::::::::::::::::::::::::::: | 68 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 76.04% :::::::::::::::::::::::::::::: | 73 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 57.29% :::::::::::::::::::::: | 55 / 96 |
+ 1.04% | 1 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 67.71% ::::::::::::::::::::::::::: | 65 / 96 |
+ 79.17% ::::::::::::::::::::::::::::::: | 76 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 76.04% :::::::::::::::::::::::::::::: | 73 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 1.04% | 1 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 67.71% ::::::::::::::::::::::::::: | 65 / 96 |
+ 79.17% ::::::::::::::::::::::::::::::: | 76 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 75.00% :::::::::::::::::::::::::::::: | 72 / 96 |
+ 76.04% :::::::::::::::::::::::::::::: | 73 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 1.04% | 1 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 67.71% ::::::::::::::::::::::::::: | 65 / 96 |
+ 79.17% ::::::::::::::::::::::::::::::: | 76 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 76.04% :::::::::::::::::::::::::::::: | 73 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 1.04% | 1 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 67.71% ::::::::::::::::::::::::::: | 65 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 76.04% :::::::::::::::::::::::::::::: | 73 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 1.04% | 1 / 96 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 80 / 96 |
+ 67.71% ::::::::::::::::::::::::::: | 65 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 76.04% :::::::::::::::::::::::::::::: | 73 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 1.04% | 1 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 67.71% ::::::::::::::::::::::::::: | 65 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 76.04% :::::::::::::::::::::::::::::: | 73 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 80.21% :::::::::::::::::::::::::::::::: | 77 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 67.71% ::::::::::::::::::::::::::: | 65 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 80.21% :::::::::::::::::::::::::::::::: | 77 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 96 / 96 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 95 / 95 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/2 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 2/2 [00:00<00:00, 63.14it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/2 [00:00<?, ?it/s]
50%|█████ | 1/2 [00:00<00:00, 1.90it/s]
100%|██████████| 2/2 [00:00<00:00, 3.65it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/028/0.3/028_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/028/0.1/028_T1.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/029.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/029
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/029.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/029
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:02<00:16, 2.30s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:03<00:10, 1.79s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:05<00:08, 1.78s/it]
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read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:05, 1.99s/it]
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read in neighbouring tiles: 88%|████████▊ | 7/8 [00:14<00:02, 2.31s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.36s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.16s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/39 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/39 [00:00<00:13, 2.77it/s]
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slice data vertically and clustering: 18%|█▊ | 7/39 [00:07<00:34, 1.08s/it]
slice data vertically and clustering: 21%|██ | 8/39 [00:08<00:28, 1.10it/s]
slice data vertically and clustering: 23%|██▎ | 9/39 [00:08<00:22, 1.31it/s]
slice data vertically and clustering: 26%|██▌ | 10/39 [00:08<00:17, 1.63it/s]
slice data vertically and clustering: 28%|██▊ | 11/39 [00:09<00:13, 2.05it/s]
slice data vertically and clustering: 31%|███ | 12/39 [00:09<00:10, 2.56it/s]
slice data vertically and clustering: 33%|███▎ | 13/39 [00:09<00:08, 3.17it/s]
slice data vertically and clustering: 36%|███▌ | 14/39 [00:09<00:06, 3.95it/s]
slice data vertically and clustering: 41%|████ | 16/39 [00:09<00:03, 5.75it/s]
slice data vertically and clustering: 46%|████▌ | 18/39 [00:09<00:02, 7.79it/s]
slice data vertically and clustering: 54%|█████▍ | 21/39 [00:09<00:01, 11.52it/s]
slice data vertically and clustering: 67%|██████▋ | 26/39 [00:09<00:00, 19.21it/s]
slice data vertically and clustering: 100%|██████████| 39/39 [00:10<00:00, 3.88it/s]fitting convex hulls to clusters
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+MMMMMMMMMMMMMMM 1.18% | 1 / 85 |
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+ 0.00% | 0 / 84 | MMMMMMMMMMMMMMM 76.47% :::::::::::::::::::::::::::::: | 65 / 85 |
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+ 1.19% | 1 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 1.18% | 1 / 85 |
+ 85.88% :::::::::::::::::::::::::::::::::: | 73 / 85 |
+ 1.18% | 1 / 85 |
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+ 78.57% ::::::::::::::::::::::::::::::: | 66 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 1.18% | 1 / 85 |
+ 85.88% :::::::::::::::::::::::::::::::::: | 73 / 85 |
+ 1.18% | 1 / 85 |
+ 1.18% | 1 / 85 |
+ 1.18% | 1 / 85 |
+ 81.18% :::::::::::::::::::::::::::::::: | 69 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 81.18% :::::::::::::::::::::::::::::::: | 69 / 85 |
+ 78.57% ::::::::::::::::::::::::::::::: | 66 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 1.18% | 1 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 1.18% | 1 / 85 |
+ 1.18% | 1 / 85 |
+ 1.18% | 1 / 85 |
+ 81.18% :::::::::::::::::::::::::::::::: | 69 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 81.18% :::::::::::::::::::::::::::::::: | 69 / 85 |
+ 78.57% ::::::::::::::::::::::::::::::: | 66 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 1.18% | 1 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 1.18% | 1 / 85 |
+ 1.18% | 1 / 85 |
+ 1.18% | 1 / 85 |
+ 81.18% :::::::::::::::::::::::::::::::: | 69 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 78.57% ::::::::::::::::::::::::::::::: | 66 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 1.18% | 1 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 90.59% :::::::::::::::::::::::::::::::::::: | 77 / 85 |
+ 85.88% :::::::::::::::::::::::::::::::::: | 73 / 85 |
+ 1.18% | 1 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 78.57% ::::::::::::::::::::::::::::::: | 66 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 1.18% | 1 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 90.59% :::::::::::::::::::::::::::::::::::: | 77 / 85 |
+ 85.88% :::::::::::::::::::::::::::::::::: | 73 / 85 |
+ 1.18% | 1 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 83.53% ::::::::::::::::::::::::::::::::: | 71 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 85.88% :::::::::::::::::::::::::::::::::: | 73 / 85 |
+ 1.18% | 1 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 70 / 84 |
+ 90.48% :::::::::::::::::::::::::::::::::::: | 76 / 84 |
+ 94.05% ::::::::::::::::::::::::::::::::::::: | 79 / 84 |
+ 91.67% :::::::::::::::::::::::::::::::::::: | 77 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 83.53% ::::::::::::::::::::::::::::::::: | 71 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 1.18% | 1 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 70 / 84 |
+ 90.48% :::::::::::::::::::::::::::::::::::: | 76 / 84 |
+ 94.05% ::::::::::::::::::::::::::::::::::::: | 79 / 84 |
+ 91.67% :::::::::::::::::::::::::::::::::::: | 77 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 83.53% ::::::::::::::::::::::::::::::::: | 71 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 1.18% | 1 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 70 / 84 |
+ 90.48% :::::::::::::::::::::::::::::::::::: | 76 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 91.67% :::::::::::::::::::::::::::::::::::: | 77 / 84 |
+ 1.19% | 1 / 84 |
+ 1.19% | 1 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 83.53% ::::::::::::::::::::::::::::::::: | 71 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 83.53% ::::::::::::::::::::::::::::::::: | 71 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 70 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 91.67% :::::::::::::::::::::::::::::::::::: | 77 / 84 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 72 / 84 |
+ 1.19% | 1 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 83.53% ::::::::::::::::::::::::::::::::: | 71 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 83.53% ::::::::::::::::::::::::::::::::: | 71 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 70 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 72 / 84 |
+ 1.19% | 1 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 83.53% ::::::::::::::::::::::::::::::::: | 71 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 70 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 72 / 84 |
+ 1.19% | 1 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 83.53% ::::::::::::::::::::::::::::::::: | 71 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 72 / 84 |
+ 1.19% | 1 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 83.53% ::::::::::::::::::::::::::::::::: | 71 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 1.19% | 1 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 95.24% :::::::::::::::::::::::::::::::::::::: | 80 / 84 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 85 / 85 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/3 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 3/3 [00:00<00:00, 90.54it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/3 [00:00<?, ?it/s]
33%|███▎ | 1/3 [00:00<00:00, 3.21it/s]
100%|██████████| 3/3 [00:00<00:00, 5.42it/s]
100%|██████████| 3/3 [00:00<00:00, 5.07it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/029/0.2/029_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/029/0.2/029_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/029/0.1/029_T2.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/035.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/035
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/035.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/035
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:06, 1.05it/s]
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read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.17s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/38 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/38 [00:00<00:13, 2.82it/s]
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slice data vertically and clustering: 21%|██ | 8/38 [00:08<00:28, 1.04it/s]
slice data vertically and clustering: 24%|██▎ | 9/38 [00:08<00:23, 1.21it/s]
slice data vertically and clustering: 26%|██▋ | 10/38 [00:09<00:19, 1.42it/s]
slice data vertically and clustering: 29%|██▉ | 11/38 [00:09<00:16, 1.68it/s]
slice data vertically and clustering: 32%|███▏ | 12/38 [00:09<00:12, 2.04it/s]
slice data vertically and clustering: 34%|███▍ | 13/38 [00:09<00:10, 2.45it/s]
slice data vertically and clustering: 37%|███▋ | 14/38 [00:10<00:08, 2.91it/s]
slice data vertically and clustering: 39%|███▉ | 15/38 [00:10<00:06, 3.45it/s]
slice data vertically and clustering: 42%|████▏ | 16/38 [00:10<00:05, 4.11it/s]
slice data vertically and clustering: 45%|████▍ | 17/38 [00:10<00:04, 4.96it/s]
slice data vertically and clustering: 50%|█████ | 19/38 [00:10<00:02, 6.89it/s]
slice data vertically and clustering: 55%|█████▌ | 21/38 [00:10<00:01, 9.10it/s]
slice data vertically and clustering: 63%|██████▎ | 24/38 [00:10<00:01, 13.14it/s]
slice data vertically and clustering: 84%|████████▍ | 32/38 [00:10<00:00, 27.57it/s]
slice data vertically and clustering: 100%|██████████| 38/38 [00:10<00:00, 3.47it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 99 |
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+ 1.02% | 1 / 98 | MMMMMMMMMMMMMMM 61.62% :::::::::::::::::::::::: | 61 / 99 |
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+ 1.02% | 1 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
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+ 1.02% | 1 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
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+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
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+ 82.65% ::::::::::::::::::::::::::::::::: | 81 / 98 |
+ 1.02% | 1 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 37.76% ::::::::::::::: | 37 / 98 |
+ 1.02% | 1 / 98 |
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+ 52.04% :::::::::::::::::::: | 51 / 98 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
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+ 1.02% | 1 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
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+ 1.02% | 1 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
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+ 1.02% | 1 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 82.83% ::::::::::::::::::::::::::::::::: | 82 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 37.76% ::::::::::::::: | 37 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 52.04% :::::::::::::::::::: | 51 / 98 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 84 / 98 |
+ 70.41% :::::::::::::::::::::::::::: | 69 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 61.22% :::::::::::::::::::::::: | 60 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 37.76% ::::::::::::::: | 37 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 52.04% :::::::::::::::::::: | 51 / 98 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 84 / 98 |
+ 70.41% :::::::::::::::::::::::::::: | 69 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 61.22% :::::::::::::::::::::::: | 60 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 37.76% ::::::::::::::: | 37 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 52.04% :::::::::::::::::::: | 51 / 98 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 84 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 61.22% :::::::::::::::::::::::: | 60 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 37.76% ::::::::::::::: | 37 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 68.37% ::::::::::::::::::::::::::: | 67 / 98 |
+ 52.04% :::::::::::::::::::: | 51 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 61.22% :::::::::::::::::::::::: | 60 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 37.76% ::::::::::::::: | 37 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 52.04% :::::::::::::::::::: | 51 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 61.22% :::::::::::::::::::::::: | 60 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 37.76% ::::::::::::::: | 37 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 61.22% :::::::::::::::::::::::: | 60 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 81.63% :::::::::::::::::::::::::::::::: | 80 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 61.22% :::::::::::::::::::::::: | 60 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 61.22% :::::::::::::::::::::::: | 60 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 61.22% :::::::::::::::::::::::: | 60 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
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+ 20.00% :::::::: | 1 / 5 |
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+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
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+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/9 [00:00<?, ?it/s]
writing stems to file: 89%|████████▉ | 8/9 [00:00<00:00, 73.34it/s]
writing stems to file: 100%|██████████| 9/9 [00:00<00:00, 75.65it/s]
+adding leaves to stems, this may take a while...
+
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100%|██████████| 9/9 [00:00<00:00, 10.75it/s]
100%|██████████| 9/9 [00:00<00:00, 10.41it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/035/0.1/035_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/035/0.1/035_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/035/0.0/035_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/035/0.2/035_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/035/0.4/035_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/035/0.0/035_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/035/0.1/035_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/035/0.0/035_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/035/0.0/035_T7.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/036.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/036
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/036.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/036
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
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read in neighbouring tiles: 100%|██████████| 8/8 [00:14<00:00, 1.78s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/38 [00:00<?, ?it/s]
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slice data vertically and clustering: 21%|██ | 8/38 [00:07<00:26, 1.12it/s]
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slice data vertically and clustering: 53%|█████▎ | 20/38 [00:09<00:02, 8.13it/s]
slice data vertically and clustering: 61%|██████ | 23/38 [00:09<00:01, 11.93it/s]
slice data vertically and clustering: 76%|███████▋ | 29/38 [00:10<00:00, 21.48it/s]
slice data vertically and clustering: 100%|██████████| 38/38 [00:10<00:00, 3.74it/s]fitting convex hulls to clusters
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+ 80.43% :::::::::::::::::::::::::::::::: | 74 / 92 |
+ 89.13% ::::::::::::::::::::::::::::::::::: | 82 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 90.22% :::::::::::::::::::::::::::::::::::: | 83 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 72.83% ::::::::::::::::::::::::::::: | 67 / 92 |
+ 76.09% :::::::::::::::::::::::::::::: | 70 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 1.09% | 1 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 80.43% :::::::::::::::::::::::::::::::: | 74 / 92 |
+ 80.43% :::::::::::::::::::::::::::::::: | 74 / 92 |
+ 89.13% ::::::::::::::::::::::::::::::::::: | 82 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 72.83% ::::::::::::::::::::::::::::: | 67 / 92 |
+ 76.09% :::::::::::::::::::::::::::::: | 70 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 1.09% | 1 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 80.43% :::::::::::::::::::::::::::::::: | 74 / 92 |
+ 80.43% :::::::::::::::::::::::::::::::: | 74 / 92 |
+ 89.13% ::::::::::::::::::::::::::::::::::: | 82 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 72.83% ::::::::::::::::::::::::::::: | 67 / 92 |
+ 76.09% :::::::::::::::::::::::::::::: | 70 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 91.30% :::::::::::::::::::::::::::::::::::: | 84 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 80.43% :::::::::::::::::::::::::::::::: | 74 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 89.13% ::::::::::::::::::::::::::::::::::: | 82 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 72.83% ::::::::::::::::::::::::::::: | 67 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 91.30% :::::::::::::::::::::::::::::::::::: | 84 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 80.43% :::::::::::::::::::::::::::::::: | 74 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 89.13% ::::::::::::::::::::::::::::::::::: | 82 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 72.83% ::::::::::::::::::::::::::::: | 67 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 91.30% :::::::::::::::::::::::::::::::::::: | 84 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 80.43% :::::::::::::::::::::::::::::::: | 74 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 91.30% :::::::::::::::::::::::::::::::::::: | 84 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 80.43% :::::::::::::::::::::::::::::::: | 74 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 91.30% :::::::::::::::::::::::::::::::::::: | 84 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/7 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 7/7 [00:00<00:00, 84.90it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/7 [00:00<?, ?it/s]
14%|█▍ | 1/7 [00:00<00:02, 2.54it/s]
43%|████▎ | 3/7 [00:00<00:00, 6.83it/s]
71%|███████▏ | 5/7 [00:00<00:00, 8.83it/s]
100%|██████████| 7/7 [00:00<00:00, 10.44it/s]
100%|██████████| 7/7 [00:00<00:00, 8.52it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/036/0.4/036_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/036/0.2/036_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/036/0.1/036_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/036/0.5/036_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/036/0.1/036_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/036/0.0/036_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/036/0.0/036_T6.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/037.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/037
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/037.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/037
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:04, 1.69it/s]
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read in neighbouring tiles: 38%|███▊ | 3/8 [00:03<00:05, 1.17s/it]
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read in neighbouring tiles: 88%|████████▊ | 7/8 [00:11<00:02, 2.17s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:14<00:00, 2.49s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:14<00:00, 1.79s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/40 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▎ | 1/40 [00:00<00:15, 2.46it/s]
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slice data vertically and clustering: 10%|█ | 4/40 [00:03<00:32, 1.10it/s]
slice data vertically and clustering: 12%|█▎ | 5/40 [00:04<00:37, 1.06s/it]
slice data vertically and clustering: 15%|█▌ | 6/40 [00:05<00:37, 1.09s/it]
slice data vertically and clustering: 18%|█▊ | 7/40 [00:06<00:34, 1.04s/it]
slice data vertically and clustering: 20%|██ | 8/40 [00:07<00:29, 1.08it/s]
slice data vertically and clustering: 22%|██▎ | 9/40 [00:07<00:25, 1.23it/s]
slice data vertically and clustering: 25%|██▌ | 10/40 [00:08<00:21, 1.42it/s]
slice data vertically and clustering: 28%|██▊ | 11/40 [00:08<00:17, 1.67it/s]
slice data vertically and clustering: 30%|███ | 12/40 [00:08<00:14, 1.97it/s]
slice data vertically and clustering: 32%|███▎ | 13/40 [00:09<00:11, 2.38it/s]
slice data vertically and clustering: 35%|███▌ | 14/40 [00:09<00:09, 2.85it/s]
slice data vertically and clustering: 38%|███▊ | 15/40 [00:09<00:07, 3.40it/s]
slice data vertically and clustering: 40%|████ | 16/40 [00:09<00:05, 4.04it/s]
slice data vertically and clustering: 42%|████▎ | 17/40 [00:09<00:04, 4.92it/s]
slice data vertically and clustering: 48%|████▊ | 19/40 [00:09<00:03, 6.90it/s]
slice data vertically and clustering: 52%|█████▎ | 21/40 [00:10<00:02, 9.24it/s]
slice data vertically and clustering: 60%|██████ | 24/40 [00:10<00:01, 13.36it/s]
slice data vertically and clustering: 78%|███████▊ | 31/40 [00:10<00:00, 25.97it/s]
slice data vertically and clustering: 100%|██████████| 40/40 [00:10<00:00, 3.89it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 101 |
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+ 1.00% | 1 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
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+ 65.35% :::::::::::::::::::::::::: | 66 / 101 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 1.00% | 1 / 100 |
+ 80.00% :::::::::::::::::::::::::::::::: | 80 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 72.00% :::::::::::::::::::::::::::: | 72 / 100 |
+ 73.00% ::::::::::::::::::::::::::::: | 73 / 100 |
+ 58.00% ::::::::::::::::::::::: | 58 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 1.00% | 1 / 100 |
+ 80.00% :::::::::::::::::::::::::::::::: | 80 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 72.00% :::::::::::::::::::::::::::: | 72 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 58.00% ::::::::::::::::::::::: | 58 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 1.00% | 1 / 100 |
+ 80.00% :::::::::::::::::::::::::::::::: | 80 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 58.00% ::::::::::::::::::::::: | 58 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 1.00% | 1 / 100 |
+ 80.00% :::::::::::::::::::::::::::::::: | 80 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 58.00% ::::::::::::::::::::::: | 58 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 84.00% ::::::::::::::::::::::::::::::::: | 84 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 84.00% ::::::::::::::::::::::::::::::::: | 84 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/2 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 2/2 [00:00<00:00, 92.35it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/2 [00:00<?, ?it/s]
50%|█████ | 1/2 [00:00<00:00, 2.92it/s]
100%|██████████| 2/2 [00:00<00:00, 5.08it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/037/0.5/037_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/037/0.2/037_T1.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/040.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/040
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/040.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/040
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:07, 1.01s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:06, 1.05s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:04<00:07, 1.51s/it]
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read in neighbouring tiles: 62%|██████▎ | 5/8 [00:08<00:05, 1.80s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:12<00:05, 2.52s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:15<00:02, 2.79s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:19<00:00, 3.03s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:19<00:00, 2.38s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/40 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▎ | 1/40 [00:00<00:18, 2.14it/s]
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slice data vertically and clustering: 18%|█▊ | 7/40 [00:08<00:43, 1.32s/it]
slice data vertically and clustering: 20%|██ | 8/40 [00:09<00:38, 1.22s/it]
slice data vertically and clustering: 22%|██▎ | 9/40 [00:10<00:33, 1.08s/it]
slice data vertically and clustering: 25%|██▌ | 10/40 [00:10<00:27, 1.08it/s]
slice data vertically and clustering: 28%|██▊ | 11/40 [00:11<00:22, 1.28it/s]
slice data vertically and clustering: 30%|███ | 12/40 [00:11<00:18, 1.53it/s]
slice data vertically and clustering: 32%|███▎ | 13/40 [00:11<00:14, 1.82it/s]
slice data vertically and clustering: 35%|███▌ | 14/40 [00:12<00:11, 2.21it/s]
slice data vertically and clustering: 38%|███▊ | 15/40 [00:12<00:09, 2.67it/s]
slice data vertically and clustering: 40%|████ | 16/40 [00:12<00:07, 3.23it/s]
slice data vertically and clustering: 42%|████▎ | 17/40 [00:12<00:05, 3.90it/s]
slice data vertically and clustering: 48%|████▊ | 19/40 [00:12<00:03, 5.61it/s]
slice data vertically and clustering: 52%|█████▎ | 21/40 [00:12<00:02, 7.57it/s]
slice data vertically and clustering: 60%|██████ | 24/40 [00:13<00:01, 11.16it/s]
slice data vertically and clustering: 75%|███████▌ | 30/40 [00:13<00:00, 20.50it/s]
slice data vertically and clustering: 100%|██████████| 40/40 [00:13<00:00, 3.04it/s]fitting convex hulls to clusters
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+ 9.35% ::: | 10 / 107 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 56.60% :::::::::::::::::::::: | 60 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 54.72% ::::::::::::::::::::: | 58 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 56.60% :::::::::::::::::::::: | 60 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 54.72% ::::::::::::::::::::: | 58 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 107 / 107 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 106 / 106 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
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+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
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+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/10 [00:00<?, ?it/s]
writing stems to file: 90%|█████████ | 9/10 [00:00<00:00, 86.46it/s]
writing stems to file: 100%|██████████| 10/10 [00:00<00:00, 89.04it/s]
+adding leaves to stems, this may take a while...
+
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+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/040/0.2/040_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/040/0.2/040_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/040/0.0/040_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/040/0.2/040_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/040/0.0/040_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/040/0.1/040_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/040/0.2/040_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/040/0.0/040_T9.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/040/0.1/040_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/040/0.1/040_T6.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/041.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/041
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/041.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/041
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
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read in neighbouring tiles: 100%|██████████| 8/8 [00:19<00:00, 2.44s/it]
+
+----- skeletonisation started -----
+
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slice data vertically and clustering: 50%|█████ | 20/40 [00:11<00:02, 7.44it/s]
slice data vertically and clustering: 57%|█████▊ | 23/40 [00:11<00:01, 11.04it/s]
slice data vertically and clustering: 72%|███████▎ | 29/40 [00:11<00:00, 20.26it/s]
slice data vertically and clustering: 100%|██████████| 40/40 [00:12<00:00, 3.32it/s]fitting convex hulls to clusters
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 59.22% ::::::::::::::::::::::: | 61 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/6 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 6/6 [00:00<00:00, 77.11it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/6 [00:00<?, ?it/s]
17%|█▋ | 1/6 [00:00<00:01, 2.57it/s]
33%|███▎ | 2/6 [00:00<00:00, 4.19it/s]
50%|█████ | 3/6 [00:00<00:00, 5.69it/s]
83%|████████▎ | 5/6 [00:00<00:00, 8.59it/s]
100%|██████████| 6/6 [00:00<00:00, 7.06it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/041/0.0/041_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/041/0.2/041_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/041/0.4/041_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/041/0.2/041_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/041/0.1/041_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/041/0.2/041_T3.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/042.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/042
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/042.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/042
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:07, 1.12s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:08, 1.49s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:04<00:08, 1.68s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:07<00:07, 1.90s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:08<00:05, 1.92s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:11<00:04, 2.09s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:13<00:02, 2.21s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.59s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.16s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/38 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/38 [00:00<00:15, 2.46it/s]
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slice data vertically and clustering: 11%|█ | 4/38 [00:03<00:30, 1.12it/s]
slice data vertically and clustering: 13%|█▎ | 5/38 [00:04<00:33, 1.02s/it]
slice data vertically and clustering: 16%|█▌ | 6/38 [00:05<00:33, 1.05s/it]
slice data vertically and clustering: 18%|█▊ | 7/38 [00:06<00:31, 1.01s/it]
slice data vertically and clustering: 21%|██ | 8/38 [00:07<00:27, 1.10it/s]
slice data vertically and clustering: 24%|██▎ | 9/38 [00:07<00:23, 1.25it/s]
slice data vertically and clustering: 26%|██▋ | 10/38 [00:08<00:19, 1.43it/s]
slice data vertically and clustering: 29%|██▉ | 11/38 [00:08<00:16, 1.67it/s]
slice data vertically and clustering: 32%|███▏ | 12/38 [00:08<00:13, 1.94it/s]
slice data vertically and clustering: 34%|███▍ | 13/38 [00:09<00:10, 2.32it/s]
slice data vertically and clustering: 37%|███▋ | 14/38 [00:09<00:08, 2.77it/s]
slice data vertically and clustering: 39%|███▉ | 15/38 [00:09<00:06, 3.29it/s]
slice data vertically and clustering: 42%|████▏ | 16/38 [00:09<00:05, 3.93it/s]
slice data vertically and clustering: 45%|████▍ | 17/38 [00:09<00:04, 4.77it/s]
slice data vertically and clustering: 50%|█████ | 19/38 [00:09<00:02, 6.76it/s]
slice data vertically and clustering: 55%|█████▌ | 21/38 [00:09<00:01, 9.07it/s]
slice data vertically and clustering: 63%|██████▎ | 24/38 [00:10<00:01, 13.21it/s]
slice data vertically and clustering: 84%|████████▍ | 32/38 [00:10<00:00, 27.92it/s]
slice data vertically and clustering: 100%|██████████| 38/38 [00:10<00:00, 3.73it/s]fitting convex hulls to clusters
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 | identifying stems...
+fitting cylinders to possible stems...
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+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
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+ 0.00% | 0 / 5 | MMMMMMMMMMMMMMM 0.00% | 0 / 6 |
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+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 | MMMMMMMMMMMMMMM 16.67% :::::: | 1 / 6 |
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+ 20.00% :::::::: | 1 / 5 |
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+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 4 / 6 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 83.33% ::::::::::::::::::::::::::::::::: | 5 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 6 / 6 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/10 [00:00<?, ?it/s]
writing stems to file: 60%|██████ | 6/10 [00:00<00:00, 56.73it/s]
writing stems to file: 100%|██████████| 10/10 [00:00<00:00, 64.70it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:03, 2.79it/s]
20%|██ | 2/10 [00:00<00:01, 4.24it/s]
40%|████ | 4/10 [00:00<00:00, 7.06it/s]
60%|██████ | 6/10 [00:00<00:00, 9.76it/s]
80%|████████ | 8/10 [00:00<00:00, 11.16it/s]
100%|██████████| 10/10 [00:01<00:00, 12.52it/s]
100%|██████████| 10/10 [00:01<00:00, 9.40it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/042/0.2/042_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/042/0.3/042_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/042/0.1/042_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/042/0.2/042_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/042/0.2/042_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/042/0.1/042_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/042/0.1/042_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/042/0.1/042_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/042/0.0/042_T9.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/042/0.0/042_T8.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/043.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/043
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/043.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/043
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:09, 1.36s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:08, 1.38s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:03<00:06, 1.32s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:05<00:05, 1.45s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:07<00:05, 1.69s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:10<00:03, 2.00s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:14<00:02, 2.65s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.85s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.20s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/39 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/39 [00:00<00:19, 1.90it/s]
slice data vertically and clustering: 5%|▌ | 2/39 [00:01<00:31, 1.18it/s]
slice data vertically and clustering: 8%|▊ | 3/39 [00:03<00:41, 1.16s/it]
slice data vertically and clustering: 10%|█ | 4/39 [00:05<00:50, 1.46s/it]
slice data vertically and clustering: 13%|█▎ | 5/39 [00:06<00:55, 1.63s/it]
slice data vertically and clustering: 15%|█▌ | 6/39 [00:08<00:50, 1.54s/it]
slice data vertically and clustering: 18%|█▊ | 7/39 [00:09<00:43, 1.37s/it]
slice data vertically and clustering: 21%|██ | 8/39 [00:10<00:37, 1.21s/it]
slice data vertically and clustering: 23%|██▎ | 9/39 [00:10<00:30, 1.01s/it]
slice data vertically and clustering: 26%|██▌ | 10/39 [00:11<00:24, 1.20it/s]
slice data vertically and clustering: 28%|██▊ | 11/39 [00:11<00:18, 1.48it/s]
slice data vertically and clustering: 31%|███ | 12/39 [00:11<00:14, 1.84it/s]
slice data vertically and clustering: 33%|███▎ | 13/39 [00:11<00:11, 2.28it/s]
slice data vertically and clustering: 36%|███▌ | 14/39 [00:12<00:08, 2.81it/s]
slice data vertically and clustering: 38%|███▊ | 15/39 [00:12<00:06, 3.43it/s]
slice data vertically and clustering: 41%|████ | 16/39 [00:12<00:05, 4.26it/s]
slice data vertically and clustering: 46%|████▌ | 18/39 [00:12<00:03, 6.05it/s]
slice data vertically and clustering: 51%|█████▏ | 20/39 [00:12<00:02, 8.12it/s]
slice data vertically and clustering: 59%|█████▉ | 23/39 [00:12<00:01, 11.92it/s]
slice data vertically and clustering: 74%|███████▍ | 29/39 [00:12<00:00, 21.53it/s]
slice data vertically and clustering: 100%|██████████| 39/39 [00:12<00:00, 3.01it/s]fitting convex hulls to clusters
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+ 1.10% | 1 / 91 |
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+ 1.10% | 1 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
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+ 1.10% | 1 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
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+ 67.39% :::::::::::::::::::::::::: | 62 / 92 |
+ 56.52% :::::::::::::::::::::: | 52 / 92 |
+ 61.96% :::::::::::::::::::::::: | 57 / 92 |
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+ 1.09% | 1 / 92 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 84.62% ::::::::::::::::::::::::::::::::: | 77 / 91 |
+ 1.10% | 1 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 67.39% :::::::::::::::::::::::::: | 62 / 92 |
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+ 59.78% ::::::::::::::::::::::: | 55 / 92 |
+ 1.09% | 1 / 92 |
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+ 1.10% | 1 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
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+ 1.10% | 1 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
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+ 1.10% | 1 / 91 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/8 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 8/8 [00:00<00:00, 92.58it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/8 [00:00<?, ?it/s]
12%|█▎ | 1/8 [00:00<00:02, 2.63it/s]
38%|███▊ | 3/8 [00:00<00:00, 6.89it/s]
62%|██████▎ | 5/8 [00:00<00:00, 9.14it/s]
88%|████████▊ | 7/8 [00:00<00:00, 11.44it/s]
100%|██████████| 8/8 [00:00<00:00, 10.04it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/043/0.2/043_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/043/0.0/043_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/043/0.1/043_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/043/0.2/043_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/043/0.2/043_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/043/0.0/043_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/043/0.0/043_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/043/0.0/043_T7.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/044.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/044
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/044.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/044
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:04, 1.74it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:01<00:04, 1.43it/s]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:03<00:05, 1.18s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:05<00:06, 1.59s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:07<00:05, 1.86s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:10<00:04, 2.09s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:12<00:02, 2.27s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:15<00:00, 2.54s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:15<00:00, 2.00s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/38 [00:00<?, ?it/s]
slice data vertically and clustering: 3%|▎ | 1/38 [00:00<00:12, 2.89it/s]
slice data vertically and clustering: 5%|▌ | 2/38 [00:00<00:18, 1.93it/s]
slice data vertically and clustering: 8%|▊ | 3/38 [00:01<00:25, 1.37it/s]
slice data vertically and clustering: 11%|█ | 4/38 [00:03<00:30, 1.13it/s]
slice data vertically and clustering: 13%|█▎ | 5/38 [00:04<00:33, 1.02s/it]
slice data vertically and clustering: 16%|█▌ | 6/38 [00:05<00:33, 1.06s/it]
slice data vertically and clustering: 18%|█▊ | 7/38 [00:06<00:31, 1.02s/it]
slice data vertically and clustering: 21%|██ | 8/38 [00:07<00:27, 1.10it/s]
slice data vertically and clustering: 24%|██▎ | 9/38 [00:07<00:23, 1.25it/s]
slice data vertically and clustering: 26%|██▋ | 10/38 [00:08<00:19, 1.43it/s]
slice data vertically and clustering: 29%|██▉ | 11/38 [00:08<00:16, 1.67it/s]
slice data vertically and clustering: 32%|███▏ | 12/38 [00:08<00:13, 1.96it/s]
slice data vertically and clustering: 34%|███▍ | 13/38 [00:09<00:10, 2.34it/s]
slice data vertically and clustering: 37%|███▋ | 14/38 [00:09<00:08, 2.80it/s]
slice data vertically and clustering: 39%|███▉ | 15/38 [00:09<00:06, 3.36it/s]
slice data vertically and clustering: 42%|████▏ | 16/38 [00:09<00:05, 4.03it/s]
slice data vertically and clustering: 45%|████▍ | 17/38 [00:09<00:04, 4.90it/s]
slice data vertically and clustering: 50%|█████ | 19/38 [00:09<00:02, 6.93it/s]
slice data vertically and clustering: 55%|█████▌ | 21/38 [00:09<00:01, 9.29it/s]
slice data vertically and clustering: 66%|██████▌ | 25/38 [00:10<00:00, 15.11it/s]
slice data vertically and clustering: 100%|██████████| 38/38 [00:10<00:00, 3.77it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 101 |
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+MMMMMMMMMMMMMMM 0.99% | 1 / 101 |
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+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 |
+ 0.00% | 0 / 100 | MMMMMMMMMMMMMMM 61.39% :::::::::::::::::::::::: | 62 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
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+ 0.99% | 1 / 101 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 0.99% | 1 / 101 |
+ 72.28% :::::::::::::::::::::::::::: | 73 / 101 |
+ 0.99% | 1 / 101 |
+ 65.35% :::::::::::::::::::::::::: | 66 / 101 |
+ 71.29% :::::::::::::::::::::::::::: | 72 / 101 |
+ 71.29% :::::::::::::::::::::::::::: | 72 / 101 |
+ 77.23% :::::::::::::::::::::::::::::: | 78 / 101 |
+ 75.25% :::::::::::::::::::::::::::::: | 76 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 47.00% :::::::::::::::::: | 47 / 100 |
+ 1.00% | 1 / 100 |
+ 1.00% | 1 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 0.99% | 1 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 0.99% | 1 / 101 |
+ 65.35% :::::::::::::::::::::::::: | 66 / 101 |
+ 71.29% :::::::::::::::::::::::::::: | 72 / 101 |
+ 71.29% :::::::::::::::::::::::::::: | 72 / 101 |
+ 77.23% :::::::::::::::::::::::::::::: | 78 / 101 |
+ 75.25% :::::::::::::::::::::::::::::: | 76 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 0.99% | 1 / 101 |
+ 47.00% :::::::::::::::::: | 47 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 0.99% | 1 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 0.99% | 1 / 101 |
+ 65.35% :::::::::::::::::::::::::: | 66 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 71.29% :::::::::::::::::::::::::::: | 72 / 101 |
+ 77.23% :::::::::::::::::::::::::::::: | 78 / 101 |
+ 75.25% :::::::::::::::::::::::::::::: | 76 / 101 |
+ 0.99% | 1 / 101 |
+ 78.22% ::::::::::::::::::::::::::::::: | 79 / 101 |
+ 0.99% | 1 / 101 |
+ 47.00% :::::::::::::::::: | 47 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 0.99% | 1 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 74.26% ::::::::::::::::::::::::::::: | 75 / 101 |
+ 65.35% :::::::::::::::::::::::::: | 66 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 71.29% :::::::::::::::::::::::::::: | 72 / 101 |
+ 77.23% :::::::::::::::::::::::::::::: | 78 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 79.21% ::::::::::::::::::::::::::::::: | 80 / 101 |
+ 78.22% ::::::::::::::::::::::::::::::: | 79 / 101 |
+ 0.99% | 1 / 101 |
+ 47.00% :::::::::::::::::: | 47 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 0.99% | 1 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 74.26% ::::::::::::::::::::::::::::: | 75 / 101 |
+ 65.35% :::::::::::::::::::::::::: | 66 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 71.29% :::::::::::::::::::::::::::: | 72 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 79.21% ::::::::::::::::::::::::::::::: | 80 / 101 |
+ 78.22% ::::::::::::::::::::::::::::::: | 79 / 101 |
+ 67.33% :::::::::::::::::::::::::: | 68 / 101 |
+ 47.00% :::::::::::::::::: | 47 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 77.00% :::::::::::::::::::::::::::::: | 77 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 70.30% :::::::::::::::::::::::::::: | 71 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 74.26% ::::::::::::::::::::::::::::: | 75 / 101 |
+ 65.35% :::::::::::::::::::::::::: | 66 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 71.29% :::::::::::::::::::::::::::: | 72 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 79.21% ::::::::::::::::::::::::::::::: | 80 / 101 |
+ 78.22% ::::::::::::::::::::::::::::::: | 79 / 101 |
+ 67.33% :::::::::::::::::::::::::: | 68 / 101 |
+ 47.00% :::::::::::::::::: | 47 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 70.30% :::::::::::::::::::::::::::: | 71 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 74.26% ::::::::::::::::::::::::::::: | 75 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 71.29% :::::::::::::::::::::::::::: | 72 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 79.21% ::::::::::::::::::::::::::::::: | 80 / 101 |
+ 78.22% ::::::::::::::::::::::::::::::: | 79 / 101 |
+ 67.33% :::::::::::::::::::::::::: | 68 / 101 |
+ 47.00% :::::::::::::::::: | 47 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 70.30% :::::::::::::::::::::::::::: | 71 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 74.26% ::::::::::::::::::::::::::::: | 75 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 71.29% :::::::::::::::::::::::::::: | 72 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 79.21% ::::::::::::::::::::::::::::::: | 80 / 101 |
+ 78.22% ::::::::::::::::::::::::::::::: | 79 / 101 |
+ 67.33% :::::::::::::::::::::::::: | 68 / 101 |
+ 47.00% :::::::::::::::::: | 47 / 100 |
+ 81.00% :::::::::::::::::::::::::::::::: | 81 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 70.30% :::::::::::::::::::::::::::: | 71 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 74.26% ::::::::::::::::::::::::::::: | 75 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 71.29% :::::::::::::::::::::::::::: | 72 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 79.21% ::::::::::::::::::::::::::::::: | 80 / 101 |
+ 78.22% ::::::::::::::::::::::::::::::: | 79 / 101 |
+ 67.33% :::::::::::::::::::::::::: | 68 / 101 |
+ 47.00% :::::::::::::::::: | 47 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 70.30% :::::::::::::::::::::::::::: | 71 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 74.26% ::::::::::::::::::::::::::::: | 75 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 79.21% ::::::::::::::::::::::::::::::: | 80 / 101 |
+ 78.22% ::::::::::::::::::::::::::::::: | 79 / 101 |
+ 67.33% :::::::::::::::::::::::::: | 68 / 101 |
+ 47.00% :::::::::::::::::: | 47 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 70.30% :::::::::::::::::::::::::::: | 71 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 74.26% ::::::::::::::::::::::::::::: | 75 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 79.21% ::::::::::::::::::::::::::::::: | 80 / 101 |
+ 78.22% ::::::::::::::::::::::::::::::: | 79 / 101 |
+ 67.33% :::::::::::::::::::::::::: | 68 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 70.30% :::::::::::::::::::::::::::: | 71 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 74.26% ::::::::::::::::::::::::::::: | 75 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 79.21% ::::::::::::::::::::::::::::::: | 80 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 67.33% :::::::::::::::::::::::::: | 68 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 70.30% :::::::::::::::::::::::::::: | 71 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 74.26% ::::::::::::::::::::::::::::: | 75 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 67.33% :::::::::::::::::::::::::: | 68 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 70.30% :::::::::::::::::::::::::::: | 71 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 67.33% :::::::::::::::::::::::::: | 68 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 70.30% :::::::::::::::::::::::::::: | 71 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 101 / 101 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 100 / 100 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/8 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 8/8 [00:00<00:00, 90.79it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/8 [00:00<?, ?it/s]
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25%|██▌ | 2/8 [00:00<00:01, 4.53it/s]
50%|█████ | 4/8 [00:00<00:00, 8.54it/s]
75%|███████▌ | 6/8 [00:00<00:00, 9.88it/s]
100%|██████████| 8/8 [00:00<00:00, 11.92it/s]
100%|██████████| 8/8 [00:00<00:00, 9.15it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/044/0.2/044_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/044/0.3/044_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/044/0.1/044_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/044/0.0/044_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/044/0.0/044_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/044/0.1/044_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/044/0.1/044_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/044/0.0/044_T5.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/045.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/045
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/045.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/045
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:10, 1.48s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:08, 1.46s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:04<00:06, 1.34s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:07<00:08, 2.11s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:10<00:07, 2.35s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:12<00:04, 2.33s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:15<00:02, 2.58s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 2.71s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 2.32s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/40 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▎ | 1/40 [00:00<00:17, 2.18it/s]
slice data vertically and clustering: 5%|▌ | 2/40 [00:01<00:23, 1.63it/s]
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slice data vertically and clustering: 20%|██ | 8/40 [00:07<00:31, 1.02it/s]
slice data vertically and clustering: 22%|██▎ | 9/40 [00:08<00:26, 1.19it/s]
slice data vertically and clustering: 25%|██▌ | 10/40 [00:08<00:21, 1.39it/s]
slice data vertically and clustering: 28%|██▊ | 11/40 [00:09<00:17, 1.64it/s]
slice data vertically and clustering: 30%|███ | 12/40 [00:09<00:14, 1.93it/s]
slice data vertically and clustering: 32%|███▎ | 13/40 [00:09<00:11, 2.33it/s]
slice data vertically and clustering: 35%|███▌ | 14/40 [00:09<00:09, 2.83it/s]
slice data vertically and clustering: 38%|███▊ | 15/40 [00:10<00:07, 3.43it/s]
slice data vertically and clustering: 40%|████ | 16/40 [00:10<00:05, 4.23it/s]
slice data vertically and clustering: 45%|████▌ | 18/40 [00:10<00:03, 6.01it/s]
slice data vertically and clustering: 50%|█████ | 20/40 [00:10<00:02, 8.06it/s]
slice data vertically and clustering: 57%|█████▊ | 23/40 [00:10<00:01, 12.01it/s]
slice data vertically and clustering: 78%|███████▊ | 31/40 [00:10<00:00, 25.88it/s]
slice data vertically and clustering: 100%|██████████| 40/40 [00:10<00:00, 3.76it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 91 |
+ 0.00% | 0 / 91 |
+ 0.00% | 0 / 91 |
+ 0.00% | 0 / 90 |
+ 0.00% | 0 / 90 |
+ 0.00% | 0 / 90 |
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+ 0.00% | 0 / 90 |
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+ 0.00% | 0 / 90 |
+ 0.00% | 0 / 90 |
+ 0.00% | 0 / 90 |
+ 0.00% | 0 / 90 |
+ 0.00% | 0 / 90 |
+MMMMMMMMMMMMMMM 0.00% | 0 / 91 |
+ 0.00% | 0 / 91 |
+ 0.00% | 0 / 91 |
+ 0.00% | 0 / 90 |
+ 0.00% | 0 / 90 |
+ 1.11% | 1 / 90 |
+ 0.00% | 0 / 90 |
+ 0.00% | 0 / 90 |
+ 0.00% | 0 / 90 |
+ 0.00% | 0 / 90 |
+ 0.00% | 0 / 90 |
+ 0.00% | 0 / 90 |
+ 0.00% | 0 / 90 |
+ 0.00% | 0 / 90 |
+ 0.00% | 0 / 90 |
+ 0.00% | 0 / 90 | MMMMMMMMMMMMMMM 1.10% | 1 / 91 |
+ 1.10% | 1 / 91 |
+ 1.10% | 1 / 91 |
+ 1.11% | 1 / 90 |
+ 1.11% | 1 / 90 |
+ 1.11% | 1 / 90 |
+ 1.11% | 1 / 90 |
+ 1.11% | 1 / 90 |
+ 71.11% :::::::::::::::::::::::::::: | 64 / 90 |
+ 1.11% | 1 / 90 |
+ 1.11% | 1 / 90 |
+ 1.11% | 1 / 90 |
+ 1.11% | 1 / 90 |
+ 1.11% | 1 / 90 |
+ 1.11% | 1 / 90 |
+ 1.11% | 1 / 90 | MMMMMMMMMMMMMMM 79.12% ::::::::::::::::::::::::::::::: | 72 / 91 |
+ 73.63% ::::::::::::::::::::::::::::: | 67 / 91 |
+ 71.43% :::::::::::::::::::::::::::: | 65 / 91 |
+ 1.11% | 1 / 90 |
+ 1.11% | 1 / 90 |
+ 73.33% ::::::::::::::::::::::::::::: | 66 / 90 |
+ 1.11% | 1 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 1.11% | 1 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 1.11% | 1 / 90 |
+ 1.11% | 1 / 90 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 75 / 90 |
+ 91.11% :::::::::::::::::::::::::::::::::::: | 82 / 90 | MMMMMMMMMMMMMMM 79.12% ::::::::::::::::::::::::::::::: | 72 / 91 |
+ 73.63% ::::::::::::::::::::::::::::: | 67 / 91 |
+ 71.43% :::::::::::::::::::::::::::: | 65 / 91 |
+ 1.11% | 1 / 90 |
+ 1.11% | 1 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 1.11% | 1 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 85.56% :::::::::::::::::::::::::::::::::: | 77 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 1.11% | 1 / 90 |
+ 1.11% | 1 / 90 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 75 / 90 |
+ 91.11% :::::::::::::::::::::::::::::::::::: | 82 / 90 | MMMMMMMMMMMMMMM 79.12% ::::::::::::::::::::::::::::::: | 72 / 91 |
+ 73.63% ::::::::::::::::::::::::::::: | 67 / 91 |
+ 71.43% :::::::::::::::::::::::::::: | 65 / 91 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 1.11% | 1 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 1.11% | 1 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 85.56% :::::::::::::::::::::::::::::::::: | 77 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 1.11% | 1 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 75 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 79.12% ::::::::::::::::::::::::::::::: | 72 / 91 |
+ 73.63% ::::::::::::::::::::::::::::: | 67 / 91 |
+ 71.43% :::::::::::::::::::::::::::: | 65 / 91 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 1.11% | 1 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 85.56% :::::::::::::::::::::::::::::::::: | 77 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 1.11% | 1 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 75 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 79.12% ::::::::::::::::::::::::::::::: | 72 / 91 |
+ 73.63% ::::::::::::::::::::::::::::: | 67 / 91 |
+ 71.43% :::::::::::::::::::::::::::: | 65 / 91 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 75 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 85.56% :::::::::::::::::::::::::::::::::: | 77 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 1.11% | 1 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 79.12% ::::::::::::::::::::::::::::::: | 72 / 91 |
+ 73.63% ::::::::::::::::::::::::::::: | 67 / 91 |
+ 71.43% :::::::::::::::::::::::::::: | 65 / 91 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 75 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 85.56% :::::::::::::::::::::::::::::::::: | 77 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 1.11% | 1 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 79.12% ::::::::::::::::::::::::::::::: | 72 / 91 |
+ 73.63% ::::::::::::::::::::::::::::: | 67 / 91 |
+ 71.43% :::::::::::::::::::::::::::: | 65 / 91 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 75 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 1.11% | 1 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 79.12% ::::::::::::::::::::::::::::::: | 72 / 91 |
+ 73.63% ::::::::::::::::::::::::::::: | 67 / 91 |
+ 71.43% :::::::::::::::::::::::::::: | 65 / 91 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 75 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 1.11% | 1 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 79.12% ::::::::::::::::::::::::::::::: | 72 / 91 |
+ 73.63% ::::::::::::::::::::::::::::: | 67 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 75 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 1.11% | 1 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 73.63% ::::::::::::::::::::::::::::: | 67 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 75 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 1.11% | 1 / 90 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 73.63% ::::::::::::::::::::::::::::: | 67 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 82.22% :::::::::::::::::::::::::::::::: | 74 / 90 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 75 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 1.11% | 1 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 73.63% ::::::::::::::::::::::::::::: | 67 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 75 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 1.11% | 1 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 73.63% ::::::::::::::::::::::::::::: | 67 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 83.33% ::::::::::::::::::::::::::::::::: | 75 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 1.11% | 1 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 73.63% ::::::::::::::::::::::::::::: | 67 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 1.11% | 1 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 84.44% ::::::::::::::::::::::::::::::::: | 76 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 91 / 91 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/6 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 6/6 [00:00<00:00, 90.12it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/6 [00:00<?, ?it/s]
17%|█▋ | 1/6 [00:00<00:01, 3.00it/s]
67%|██████▋ | 4/6 [00:00<00:00, 9.44it/s]
100%|██████████| 6/6 [00:00<00:00, 11.13it/s]
100%|██████████| 6/6 [00:00<00:00, 9.52it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/045/0.3/045_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/045/0.2/045_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/045/0.0/045_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/045/0.2/045_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/045/0.1/045_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/045/0.1/045_T4.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/046.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/046
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/046.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/046
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:06, 1.02it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:03<00:12, 2.14s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:06<00:11, 2.21s/it]
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read in neighbouring tiles: 62%|██████▎ | 5/8 [00:11<00:07, 2.54s/it]
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read in neighbouring tiles: 88%|████████▊ | 7/8 [00:17<00:02, 2.72s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:21<00:00, 3.05s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:21<00:00, 2.64s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/40 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▎ | 1/40 [00:00<00:20, 1.86it/s]
slice data vertically and clustering: 5%|▌ | 2/40 [00:01<00:31, 1.22it/s]
slice data vertically and clustering: 8%|▊ | 3/40 [00:02<00:39, 1.08s/it]
slice data vertically and clustering: 10%|█ | 4/40 [00:04<00:45, 1.26s/it]
slice data vertically and clustering: 12%|█▎ | 5/40 [00:06<00:50, 1.44s/it]
slice data vertically and clustering: 15%|█▌ | 6/40 [00:07<00:49, 1.46s/it]
slice data vertically and clustering: 18%|█▊ | 7/40 [00:08<00:45, 1.39s/it]
slice data vertically and clustering: 20%|██ | 8/40 [00:09<00:40, 1.26s/it]
slice data vertically and clustering: 22%|██▎ | 9/40 [00:10<00:33, 1.08s/it]
slice data vertically and clustering: 25%|██▌ | 10/40 [00:11<00:27, 1.08it/s]
slice data vertically and clustering: 28%|██▊ | 11/40 [00:11<00:22, 1.29it/s]
slice data vertically and clustering: 30%|███ | 12/40 [00:12<00:18, 1.53it/s]
slice data vertically and clustering: 32%|███▎ | 13/40 [00:12<00:14, 1.83it/s]
slice data vertically and clustering: 35%|███▌ | 14/40 [00:12<00:11, 2.23it/s]
slice data vertically and clustering: 38%|███▊ | 15/40 [00:12<00:09, 2.71it/s]
slice data vertically and clustering: 40%|████ | 16/40 [00:12<00:07, 3.29it/s]
slice data vertically and clustering: 42%|████▎ | 17/40 [00:13<00:05, 3.98it/s]
slice data vertically and clustering: 48%|████▊ | 19/40 [00:13<00:03, 5.73it/s]
slice data vertically and clustering: 52%|█████▎ | 21/40 [00:13<00:02, 7.69it/s]
slice data vertically and clustering: 60%|██████ | 24/40 [00:13<00:01, 11.35it/s]
slice data vertically and clustering: 75%|███████▌ | 30/40 [00:13<00:00, 20.89it/s]
slice data vertically and clustering: 100%|██████████| 40/40 [00:13<00:00, 2.94it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 104 |
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+MMMMMMMMMMMMMMM 0.96% | 1 / 104 |
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+ 0.00% | 0 / 103 | MMMMMMMMMMMMMMM 51.92% :::::::::::::::::::: | 54 / 104 |
+ 0.96% | 1 / 104 |
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+ 0.97% | 1 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 57.69% ::::::::::::::::::::::: | 60 / 104 |
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+ 0.96% | 1 / 104 |
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+ 75.00% :::::::::::::::::::::::::::::: | 78 / 104 |
+ 63.46% ::::::::::::::::::::::::: | 66 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 68.93% ::::::::::::::::::::::::::: | 71 / 103 |
+ 70.87% :::::::::::::::::::::::::::: | 73 / 103 |
+ 73.79% ::::::::::::::::::::::::::::: | 76 / 103 |
+ 73.79% ::::::::::::::::::::::::::::: | 76 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 57.69% ::::::::::::::::::::::: | 60 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 77.88% ::::::::::::::::::::::::::::::: | 81 / 104 |
+ 61.54% :::::::::::::::::::::::: | 64 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 64.42% ::::::::::::::::::::::::: | 67 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 63.46% ::::::::::::::::::::::::: | 66 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 68.93% ::::::::::::::::::::::::::: | 71 / 103 |
+ 70.87% :::::::::::::::::::::::::::: | 73 / 103 |
+ 73.79% ::::::::::::::::::::::::::::: | 76 / 103 |
+ 73.79% ::::::::::::::::::::::::::::: | 76 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 77.88% ::::::::::::::::::::::::::::::: | 81 / 104 |
+ 61.54% :::::::::::::::::::::::: | 64 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 64.42% ::::::::::::::::::::::::: | 67 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 63.46% ::::::::::::::::::::::::: | 66 / 104 |
+ 73.08% ::::::::::::::::::::::::::::: | 76 / 104 |
+ 68.93% ::::::::::::::::::::::::::: | 71 / 103 |
+ 70.87% :::::::::::::::::::::::::::: | 73 / 103 |
+ 73.79% ::::::::::::::::::::::::::::: | 76 / 103 |
+ 73.79% ::::::::::::::::::::::::::::: | 76 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 77.88% ::::::::::::::::::::::::::::::: | 81 / 104 |
+ 61.54% :::::::::::::::::::::::: | 64 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 64.42% ::::::::::::::::::::::::: | 67 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 63.46% ::::::::::::::::::::::::: | 66 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 68.93% ::::::::::::::::::::::::::: | 71 / 103 |
+ 70.87% :::::::::::::::::::::::::::: | 73 / 103 |
+ 73.79% ::::::::::::::::::::::::::::: | 76 / 103 |
+ 73.79% ::::::::::::::::::::::::::::: | 76 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 77.88% ::::::::::::::::::::::::::::::: | 81 / 104 |
+ 61.54% :::::::::::::::::::::::: | 64 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 64.42% ::::::::::::::::::::::::: | 67 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 63.46% ::::::::::::::::::::::::: | 66 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 70.87% :::::::::::::::::::::::::::: | 73 / 103 |
+ 73.79% ::::::::::::::::::::::::::::: | 76 / 103 |
+ 73.79% ::::::::::::::::::::::::::::: | 76 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 77.88% ::::::::::::::::::::::::::::::: | 81 / 104 |
+ 61.54% :::::::::::::::::::::::: | 64 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 64.42% ::::::::::::::::::::::::: | 67 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 63.46% ::::::::::::::::::::::::: | 66 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 70.87% :::::::::::::::::::::::::::: | 73 / 103 |
+ 73.79% ::::::::::::::::::::::::::::: | 76 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 74.76% ::::::::::::::::::::::::::::: | 77 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 77.88% ::::::::::::::::::::::::::::::: | 81 / 104 |
+ 61.54% :::::::::::::::::::::::: | 64 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 64.42% ::::::::::::::::::::::::: | 67 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 63.46% ::::::::::::::::::::::::: | 66 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 70.87% :::::::::::::::::::::::::::: | 73 / 103 |
+ 73.79% ::::::::::::::::::::::::::::: | 76 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 77.88% ::::::::::::::::::::::::::::::: | 81 / 104 |
+ 61.54% :::::::::::::::::::::::: | 64 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 64.42% ::::::::::::::::::::::::: | 67 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 70.87% :::::::::::::::::::::::::::: | 73 / 103 |
+ 73.79% ::::::::::::::::::::::::::::: | 76 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 77.88% ::::::::::::::::::::::::::::::: | 81 / 104 |
+ 61.54% :::::::::::::::::::::::: | 64 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 64.42% ::::::::::::::::::::::::: | 67 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 70.87% :::::::::::::::::::::::::::: | 73 / 103 |
+ 73.79% ::::::::::::::::::::::::::::: | 76 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 77.88% ::::::::::::::::::::::::::::::: | 81 / 104 |
+ 61.54% :::::::::::::::::::::::: | 64 / 104 |
+ 65.38% :::::::::::::::::::::::::: | 68 / 104 |
+ 64.42% ::::::::::::::::::::::::: | 67 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 70.87% :::::::::::::::::::::::::::: | 73 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 77.88% ::::::::::::::::::::::::::::::: | 81 / 104 |
+ 61.54% :::::::::::::::::::::::: | 64 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 64.42% ::::::::::::::::::::::::: | 67 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 70.87% :::::::::::::::::::::::::::: | 73 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 77.88% ::::::::::::::::::::::::::::::: | 81 / 104 |
+ 61.54% :::::::::::::::::::::::: | 64 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 64.42% ::::::::::::::::::::::::: | 67 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 77.88% ::::::::::::::::::::::::::::::: | 81 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 64.42% ::::::::::::::::::::::::: | 67 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 77.88% ::::::::::::::::::::::::::::::: | 81 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 60.58% :::::::::::::::::::::::: | 63 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 104 / 104 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 103 / 103 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/9 [00:00<?, ?it/s]
writing stems to file: 67%|██████▋ | 6/9 [00:00<00:00, 53.77it/s]
writing stems to file: 100%|██████████| 9/9 [00:00<00:00, 63.62it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/9 [00:00<?, ?it/s]
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100%|██████████| 9/9 [00:01<00:00, 6.80it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/046/0.2/046_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/046/0.7/046_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/046/0.2/046_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/046/0.1/046_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/046/0.0/046_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/046/0.1/046_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/046/0.2/046_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/046/0.0/046_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/046/0.0/046_T6.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/047.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/047
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/047.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/047
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:02<00:16, 2.35s/it]
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read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.25s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/39 [00:00<?, ?it/s]
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slice data vertically and clustering: 21%|██ | 8/39 [00:09<00:34, 1.12s/it]
slice data vertically and clustering: 23%|██▎ | 9/39 [00:10<00:27, 1.08it/s]
slice data vertically and clustering: 26%|██▌ | 10/39 [00:10<00:21, 1.32it/s]
slice data vertically and clustering: 28%|██▊ | 11/39 [00:10<00:16, 1.67it/s]
slice data vertically and clustering: 31%|███ | 12/39 [00:10<00:12, 2.08it/s]
slice data vertically and clustering: 33%|███▎ | 13/39 [00:11<00:09, 2.60it/s]
slice data vertically and clustering: 36%|███▌ | 14/39 [00:11<00:07, 3.22it/s]
slice data vertically and clustering: 38%|███▊ | 15/39 [00:11<00:05, 4.02it/s]
slice data vertically and clustering: 44%|████▎ | 17/39 [00:11<00:03, 5.77it/s]
slice data vertically and clustering: 49%|████▊ | 19/39 [00:11<00:02, 7.76it/s]
slice data vertically and clustering: 56%|█████▋ | 22/39 [00:11<00:01, 11.38it/s]
slice data vertically and clustering: 69%|██████▉ | 27/39 [00:11<00:00, 18.94it/s]
slice data vertically and clustering: 100%|██████████| 39/39 [00:11<00:00, 3.26it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 89 |
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+ 44.32% ::::::::::::::::: | 39 / 88 |
+ 1.14% | 1 / 88 |
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+ 1.14% | 1 / 88 | MMMMMMMMMMMMMMM 1.12% | 1 / 89 |
+ 1.12% | 1 / 89 |
+ 1.12% | 1 / 89 |
+ 1.12% | 1 / 89 |
+ 68.54% ::::::::::::::::::::::::::: | 61 / 89 |
+ 1.12% | 1 / 89 |
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+ 76.14% :::::::::::::::::::::::::::::: | 67 / 88 |
+ 44.32% ::::::::::::::::: | 39 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 1.14% | 1 / 88 |
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+ 1.14% | 1 / 88 |
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+ 1.14% | 1 / 88 | MMMMMMMMMMMMMMM 84.27% ::::::::::::::::::::::::::::::::: | 75 / 89 |
+ 1.12% | 1 / 89 |
+ 1.12% | 1 / 89 |
+ 1.12% | 1 / 89 |
+ 68.54% ::::::::::::::::::::::::::: | 61 / 89 |
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+ 68.54% ::::::::::::::::::::::::::: | 61 / 89 |
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+ 44.32% ::::::::::::::::: | 39 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
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+ 95.45% :::::::::::::::::::::::::::::::::::::: | 84 / 88 |
+ 88.64% ::::::::::::::::::::::::::::::::::: | 78 / 88 |
+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 95.45% :::::::::::::::::::::::::::::::::::::: | 84 / 88 | MMMMMMMMMMMMMMM 84.27% ::::::::::::::::::::::::::::::::: | 75 / 89 |
+ 1.12% | 1 / 89 |
+ 1.12% | 1 / 89 |
+ 1.12% | 1 / 89 |
+ 68.54% ::::::::::::::::::::::::::: | 61 / 89 |
+ 86.52% :::::::::::::::::::::::::::::::::: | 77 / 89 |
+ 68.54% ::::::::::::::::::::::::::: | 61 / 89 |
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+ 44.32% ::::::::::::::::: | 39 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 89.77% ::::::::::::::::::::::::::::::::::: | 79 / 88 |
+ 95.45% :::::::::::::::::::::::::::::::::::::: | 84 / 88 |
+ 88.64% ::::::::::::::::::::::::::::::::::: | 78 / 88 |
+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 84.27% ::::::::::::::::::::::::::::::::: | 75 / 89 |
+ 1.12% | 1 / 89 |
+ 1.12% | 1 / 89 |
+ 1.12% | 1 / 89 |
+ 68.54% ::::::::::::::::::::::::::: | 61 / 89 |
+ 86.52% :::::::::::::::::::::::::::::::::: | 77 / 89 |
+ 68.54% ::::::::::::::::::::::::::: | 61 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 44.32% ::::::::::::::::: | 39 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 89.77% ::::::::::::::::::::::::::::::::::: | 79 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 88.64% ::::::::::::::::::::::::::::::::::: | 78 / 88 |
+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 84.27% ::::::::::::::::::::::::::::::::: | 75 / 89 |
+ 1.12% | 1 / 89 |
+ 1.12% | 1 / 89 |
+ 1.12% | 1 / 89 |
+ 68.54% ::::::::::::::::::::::::::: | 61 / 89 |
+ 86.52% :::::::::::::::::::::::::::::::::: | 77 / 89 |
+ 68.54% ::::::::::::::::::::::::::: | 61 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 44.32% ::::::::::::::::: | 39 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 88.64% ::::::::::::::::::::::::::::::::::: | 78 / 88 |
+ 1.14% | 1 / 88 |
+ 1.14% | 1 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 84.27% ::::::::::::::::::::::::::::::::: | 75 / 89 |
+ 96.63% :::::::::::::::::::::::::::::::::::::: | 86 / 89 |
+ 1.12% | 1 / 89 |
+ 1.12% | 1 / 89 |
+ 68.54% ::::::::::::::::::::::::::: | 61 / 89 |
+ 86.52% :::::::::::::::::::::::::::::::::: | 77 / 89 |
+ 68.54% ::::::::::::::::::::::::::: | 61 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 44.32% ::::::::::::::::: | 39 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 77 / 88 |
+ 1.14% | 1 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 84.27% ::::::::::::::::::::::::::::::::: | 75 / 89 |
+ 96.63% :::::::::::::::::::::::::::::::::::::: | 86 / 89 |
+ 1.12% | 1 / 89 |
+ 1.12% | 1 / 89 |
+ 68.54% ::::::::::::::::::::::::::: | 61 / 89 |
+ 86.52% :::::::::::::::::::::::::::::::::: | 77 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 44.32% ::::::::::::::::: | 39 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 77 / 88 |
+ 1.14% | 1 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 96.63% :::::::::::::::::::::::::::::::::::::: | 86 / 89 |
+ 1.12% | 1 / 89 |
+ 1.12% | 1 / 89 |
+ 68.54% ::::::::::::::::::::::::::: | 61 / 89 |
+ 86.52% :::::::::::::::::::::::::::::::::: | 77 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 44.32% ::::::::::::::::: | 39 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 77 / 88 |
+ 1.14% | 1 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 96.63% :::::::::::::::::::::::::::::::::::::: | 86 / 89 |
+ 1.12% | 1 / 89 |
+ 1.12% | 1 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 86.52% :::::::::::::::::::::::::::::::::: | 77 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 44.32% ::::::::::::::::: | 39 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 77 / 88 |
+ 1.14% | 1 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 96.63% :::::::::::::::::::::::::::::::::::::: | 86 / 89 |
+ 92.13% :::::::::::::::::::::::::::::::::::: | 82 / 89 |
+ 95.51% :::::::::::::::::::::::::::::::::::::: | 85 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 44.32% ::::::::::::::::: | 39 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 77 / 88 |
+ 1.14% | 1 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 92.13% :::::::::::::::::::::::::::::::::::: | 82 / 89 |
+ 95.51% :::::::::::::::::::::::::::::::::::::: | 85 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 44.32% ::::::::::::::::: | 39 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 77 / 88 |
+ 81.82% :::::::::::::::::::::::::::::::: | 72 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 92.13% :::::::::::::::::::::::::::::::::::: | 82 / 89 |
+ 95.51% :::::::::::::::::::::::::::::::::::::: | 85 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 77 / 88 |
+ 81.82% :::::::::::::::::::::::::::::::: | 72 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 92.13% :::::::::::::::::::::::::::::::::::: | 82 / 89 |
+ 95.51% :::::::::::::::::::::::::::::::::::::: | 85 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 81.82% :::::::::::::::::::::::::::::::: | 72 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 92.13% :::::::::::::::::::::::::::::::::::: | 82 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 81.82% :::::::::::::::::::::::::::::::: | 72 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 81.82% :::::::::::::::::::::::::::::::: | 72 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 88 / 88 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/5 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 5/5 [00:00<00:00, 80.36it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/5 [00:00<?, ?it/s]
20%|██ | 1/5 [00:00<00:01, 3.62it/s]
60%|██████ | 3/5 [00:00<00:00, 7.78it/s]
100%|██████████| 5/5 [00:00<00:00, 9.84it/s]
100%|██████████| 5/5 [00:00<00:00, 8.58it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/047/0.1/047_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/047/0.2/047_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/047/0.2/047_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/047/0.0/047_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/047/0.0/047_T3.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/062.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/062
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/062.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/062
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:06, 1.12it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:03<00:12, 2.02s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:05<00:09, 1.88s/it]
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read in neighbouring tiles: 88%|████████▊ | 7/8 [00:16<00:02, 2.67s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 2.72s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 2.35s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/40 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▎ | 1/40 [00:00<00:18, 2.09it/s]
slice data vertically and clustering: 5%|▌ | 2/40 [00:01<00:24, 1.55it/s]
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slice data vertically and clustering: 10%|█ | 4/40 [00:03<00:37, 1.05s/it]
slice data vertically and clustering: 12%|█▎ | 5/40 [00:05<00:42, 1.23s/it]
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slice data vertically and clustering: 18%|█▊ | 7/40 [00:07<00:40, 1.22s/it]
slice data vertically and clustering: 20%|██ | 8/40 [00:08<00:33, 1.06s/it]
slice data vertically and clustering: 22%|██▎ | 9/40 [00:09<00:28, 1.10it/s]
slice data vertically and clustering: 25%|██▌ | 10/40 [00:09<00:23, 1.29it/s]
slice data vertically and clustering: 28%|██▊ | 11/40 [00:09<00:18, 1.54it/s]
slice data vertically and clustering: 30%|███ | 12/40 [00:10<00:15, 1.83it/s]
slice data vertically and clustering: 32%|███▎ | 13/40 [00:10<00:12, 2.24it/s]
slice data vertically and clustering: 35%|███▌ | 14/40 [00:10<00:09, 2.74it/s]
slice data vertically and clustering: 38%|███▊ | 15/40 [00:10<00:07, 3.37it/s]
slice data vertically and clustering: 42%|████▎ | 17/40 [00:10<00:04, 4.99it/s]
slice data vertically and clustering: 48%|████▊ | 19/40 [00:10<00:03, 6.83it/s]
slice data vertically and clustering: 55%|█████▌ | 22/40 [00:11<00:01, 10.27it/s]
slice data vertically and clustering: 70%|███████ | 28/40 [00:11<00:00, 18.95it/s]
slice data vertically and clustering: 100%|██████████| 40/40 [00:11<00:00, 3.55it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 93 |
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+ 1.09% | 1 / 92 | MMMMMMMMMMMMMMM 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
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+ 88.04% ::::::::::::::::::::::::::::::::::: | 81 / 92 |
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+ 1.08% | 1 / 93 |
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+ 1.08% | 1 / 93 |
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+ 88.04% ::::::::::::::::::::::::::::::::::: | 81 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
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+ 79.57% ::::::::::::::::::::::::::::::: | 74 / 93 |
+ 70.97% :::::::::::::::::::::::::::: | 66 / 93 |
+ 1.08% | 1 / 93 |
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+ 80.65% :::::::::::::::::::::::::::::::: | 75 / 93 |
+ 83.87% ::::::::::::::::::::::::::::::::: | 78 / 93 |
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+ 1.08% | 1 / 93 |
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+ 1.08% | 1 / 93 |
+ 78.49% ::::::::::::::::::::::::::::::: | 73 / 93 |
+ 80.43% :::::::::::::::::::::::::::::::: | 74 / 92 |
+ 88.04% ::::::::::::::::::::::::::::::::::: | 81 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 70.97% :::::::::::::::::::::::::::: | 66 / 93 |
+ 1.08% | 1 / 93 |
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+ 80.65% :::::::::::::::::::::::::::::::: | 75 / 93 |
+ 83.87% ::::::::::::::::::::::::::::::::: | 78 / 93 |
+ 82.80% ::::::::::::::::::::::::::::::::: | 77 / 93 |
+ 1.08% | 1 / 93 |
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+ 78.49% ::::::::::::::::::::::::::::::: | 73 / 93 |
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+ 80.43% :::::::::::::::::::::::::::::::: | 74 / 92 |
+ 88.04% ::::::::::::::::::::::::::::::::::: | 81 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 73.12% ::::::::::::::::::::::::::::: | 68 / 93 |
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+ 88.04% ::::::::::::::::::::::::::::::::::: | 81 / 92 |
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+ 83.87% ::::::::::::::::::::::::::::::::: | 78 / 93 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 78.49% ::::::::::::::::::::::::::::::: | 73 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 80.43% :::::::::::::::::::::::::::::::: | 74 / 92 |
+ 88.04% ::::::::::::::::::::::::::::::::::: | 81 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 70.97% :::::::::::::::::::::::::::: | 66 / 93 |
+ 1.08% | 1 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 83.87% ::::::::::::::::::::::::::::::::: | 78 / 93 |
+ 82.80% ::::::::::::::::::::::::::::::::: | 77 / 93 |
+ 51.61% :::::::::::::::::::: | 48 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 78.49% ::::::::::::::::::::::::::::::: | 73 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 80.43% :::::::::::::::::::::::::::::::: | 74 / 92 |
+ 88.04% ::::::::::::::::::::::::::::::::::: | 81 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 70.97% :::::::::::::::::::::::::::: | 66 / 93 |
+ 1.08% | 1 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 83.87% ::::::::::::::::::::::::::::::::: | 78 / 93 |
+ 82.80% ::::::::::::::::::::::::::::::::: | 77 / 93 |
+ 51.61% :::::::::::::::::::: | 48 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 78.49% ::::::::::::::::::::::::::::::: | 73 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 88.04% ::::::::::::::::::::::::::::::::::: | 81 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 70.97% :::::::::::::::::::::::::::: | 66 / 93 |
+ 62.37% :::::::::::::::::::::::: | 58 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 83.87% ::::::::::::::::::::::::::::::::: | 78 / 93 |
+ 82.80% ::::::::::::::::::::::::::::::::: | 77 / 93 |
+ 51.61% :::::::::::::::::::: | 48 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 78.49% ::::::::::::::::::::::::::::::: | 73 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 70.97% :::::::::::::::::::::::::::: | 66 / 93 |
+ 62.37% :::::::::::::::::::::::: | 58 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 83.87% ::::::::::::::::::::::::::::::::: | 78 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 51.61% :::::::::::::::::::: | 48 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 78.49% ::::::::::::::::::::::::::::::: | 73 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 70.97% :::::::::::::::::::::::::::: | 66 / 93 |
+ 62.37% :::::::::::::::::::::::: | 58 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 51.61% :::::::::::::::::::: | 48 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 78.49% ::::::::::::::::::::::::::::::: | 73 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 62.37% :::::::::::::::::::::::: | 58 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 51.61% :::::::::::::::::::: | 48 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 78.49% ::::::::::::::::::::::::::::::: | 73 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 62.37% :::::::::::::::::::::::: | 58 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 51.61% :::::::::::::::::::: | 48 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 62.37% :::::::::::::::::::::::: | 58 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 93 / 93 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 92 / 92 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/8 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 8/8 [00:00<00:00, 74.03it/s]
writing stems to file: 100%|██████████| 8/8 [00:00<00:00, 73.87it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/8 [00:00<?, ?it/s]
12%|█▎ | 1/8 [00:00<00:02, 2.61it/s]
38%|███▊ | 3/8 [00:00<00:00, 6.99it/s]
75%|███████▌ | 6/8 [00:00<00:00, 10.79it/s]
100%|██████████| 8/8 [00:00<00:00, 10.23it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/062/0.3/062_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/062/0.3/062_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/062/0.1/062_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/062/0.1/062_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/062/0.0/062_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/062/0.0/062_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/062/0.3/062_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/062/0.1/062_T4.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/063.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/063
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/063.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/063
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:08, 1.18s/it]
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read in neighbouring tiles: 62%|██████▎ | 5/8 [00:11<00:07, 2.49s/it]
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read in neighbouring tiles: 88%|████████▊ | 7/8 [00:16<00:02, 2.78s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 2.93s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 2.53s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/40 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▎ | 1/40 [00:00<00:19, 2.01it/s]
slice data vertically and clustering: 5%|▌ | 2/40 [00:01<00:28, 1.35it/s]
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slice data vertically and clustering: 10%|█ | 4/40 [00:03<00:39, 1.11s/it]
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slice data vertically and clustering: 18%|█▊ | 7/40 [00:08<00:41, 1.25s/it]
slice data vertically and clustering: 20%|██ | 8/40 [00:08<00:36, 1.14s/it]
slice data vertically and clustering: 22%|██▎ | 9/40 [00:09<00:30, 1.03it/s]
slice data vertically and clustering: 25%|██▌ | 10/40 [00:10<00:24, 1.21it/s]
slice data vertically and clustering: 28%|██▊ | 11/40 [00:10<00:20, 1.44it/s]
slice data vertically and clustering: 30%|███ | 12/40 [00:10<00:16, 1.71it/s]
slice data vertically and clustering: 32%|███▎ | 13/40 [00:10<00:12, 2.09it/s]
slice data vertically and clustering: 35%|███▌ | 14/40 [00:11<00:10, 2.55it/s]
slice data vertically and clustering: 38%|███▊ | 15/40 [00:11<00:07, 3.13it/s]
slice data vertically and clustering: 40%|████ | 16/40 [00:11<00:06, 3.81it/s]
slice data vertically and clustering: 45%|████▌ | 18/40 [00:11<00:03, 5.56it/s]
slice data vertically and clustering: 50%|█████ | 20/40 [00:11<00:02, 7.53it/s]
slice data vertically and clustering: 57%|█████▊ | 23/40 [00:11<00:01, 11.16it/s]
slice data vertically and clustering: 72%|███████▎ | 29/40 [00:11<00:00, 20.46it/s]
slice data vertically and clustering: 100%|██████████| 40/40 [00:12<00:00, 3.32it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 99 |
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+ 1.02% | 1 / 98 | MMMMMMMMMMMMMMM 50.51% :::::::::::::::::::: | 50 / 99 |
+ 65.66% :::::::::::::::::::::::::: | 65 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 74.75% ::::::::::::::::::::::::::::: | 74 / 99 |
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+ 1.01% | 1 / 99 |
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+ 87.88% ::::::::::::::::::::::::::::::::::: | 87 / 99 |
+ 69.70% ::::::::::::::::::::::::::: | 69 / 99 |
+ 77.78% ::::::::::::::::::::::::::::::: | 77 / 99 |
+ 1.02% | 1 / 98 | MMMMMMMMMMMMMMM 50.51% :::::::::::::::::::: | 50 / 99 |
+ 65.66% :::::::::::::::::::::::::: | 65 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 74.75% ::::::::::::::::::::::::::::: | 74 / 99 |
+ 73.74% ::::::::::::::::::::::::::::: | 73 / 99 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
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+ 1.01% | 1 / 99 |
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+ 69.70% ::::::::::::::::::::::::::: | 69 / 99 |
+ 77.78% ::::::::::::::::::::::::::::::: | 77 / 99 |
+ 1.02% | 1 / 98 | MMMMMMMMMMMMMMM 50.51% :::::::::::::::::::: | 50 / 99 |
+ 65.66% :::::::::::::::::::::::::: | 65 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 74.75% ::::::::::::::::::::::::::::: | 74 / 99 |
+ 73.74% ::::::::::::::::::::::::::::: | 73 / 99 |
+ 76.77% :::::::::::::::::::::::::::::: | 76 / 99 |
+ 59.60% ::::::::::::::::::::::: | 59 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
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+ 70.71% :::::::::::::::::::::::::::: | 70 / 99 |
+ 1.01% | 1 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
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+ 69.70% ::::::::::::::::::::::::::: | 69 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 73.47% ::::::::::::::::::::::::::::: | 72 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 65.66% :::::::::::::::::::::::::: | 65 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 74.75% ::::::::::::::::::::::::::::: | 74 / 99 |
+ 73.74% ::::::::::::::::::::::::::::: | 73 / 99 |
+ 76.77% :::::::::::::::::::::::::::::: | 76 / 99 |
+ 59.60% ::::::::::::::::::::::: | 59 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 63.64% ::::::::::::::::::::::::: | 63 / 99 |
+ 70.71% :::::::::::::::::::::::::::: | 70 / 99 |
+ 1.01% | 1 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
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+ 69.70% ::::::::::::::::::::::::::: | 69 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 73.47% ::::::::::::::::::::::::::::: | 72 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 65.66% :::::::::::::::::::::::::: | 65 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
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+ 70.71% :::::::::::::::::::::::::::: | 70 / 99 |
+ 1.01% | 1 / 99 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 73.47% ::::::::::::::::::::::::::::: | 72 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 65.66% :::::::::::::::::::::::::: | 65 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
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+ 70.71% :::::::::::::::::::::::::::: | 70 / 99 |
+ 1.01% | 1 / 99 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 73.47% ::::::::::::::::::::::::::::: | 72 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
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+ 63.64% ::::::::::::::::::::::::: | 63 / 99 |
+ 70.71% :::::::::::::::::::::::::::: | 70 / 99 |
+ 1.01% | 1 / 99 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 73.47% ::::::::::::::::::::::::::::: | 72 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
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+ 70.71% :::::::::::::::::::::::::::: | 70 / 99 |
+ 1.01% | 1 / 99 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
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+ 70.71% :::::::::::::::::::::::::::: | 70 / 99 |
+ 1.01% | 1 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 69.70% ::::::::::::::::::::::::::: | 69 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 73.47% ::::::::::::::::::::::::::::: | 72 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 73.74% ::::::::::::::::::::::::::::: | 73 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 63.64% ::::::::::::::::::::::::: | 63 / 99 |
+ 70.71% :::::::::::::::::::::::::::: | 70 / 99 |
+ 1.01% | 1 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 69.70% ::::::::::::::::::::::::::: | 69 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 73.47% ::::::::::::::::::::::::::::: | 72 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 63.64% ::::::::::::::::::::::::: | 63 / 99 |
+ 70.71% :::::::::::::::::::::::::::: | 70 / 99 |
+ 1.01% | 1 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 69.70% ::::::::::::::::::::::::::: | 69 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 73.47% ::::::::::::::::::::::::::::: | 72 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 63.64% ::::::::::::::::::::::::: | 63 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 1.01% | 1 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 69.70% ::::::::::::::::::::::::::: | 69 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 73.47% ::::::::::::::::::::::::::::: | 72 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 63.64% ::::::::::::::::::::::::: | 63 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 1.01% | 1 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 73.47% ::::::::::::::::::::::::::::: | 72 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 58.59% ::::::::::::::::::::::: | 58 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 73.47% ::::::::::::::::::::::::::::: | 72 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 58.59% ::::::::::::::::::::::: | 58 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/14 [00:00<?, ?it/s]
writing stems to file: 43%|████▎ | 6/14 [00:00<00:00, 52.69it/s]
writing stems to file: 100%|██████████| 14/14 [00:00<00:00, 69.76it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/14 [00:00<?, ?it/s]
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100%|██████████| 14/14 [00:01<00:00, 8.34it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/063/0.8/063_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/063/0.3/063_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/063/0.1/063_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/063/0.1/063_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/063/0.2/063_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/063/0.3/063_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/063/0.1/063_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/063/0.1/063_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/063/0.2/063_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/063/0.0/063_T11.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/063/0.1/063_T9.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/063/0.0/063_T10.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/063/0.0/063_T13.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/063/0.0/063_T12.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/070.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/070
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/070.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/070
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:08, 1.21s/it]
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read in neighbouring tiles: 100%|██████████| 8/8 [00:15<00:00, 2.00s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/38 [00:00<?, ?it/s]
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slice data vertically and clustering: 21%|██ | 8/38 [00:06<00:26, 1.14it/s]
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slice data vertically and clustering: 26%|██▋ | 10/38 [00:07<00:18, 1.51it/s]
slice data vertically and clustering: 29%|██▉ | 11/38 [00:08<00:15, 1.77it/s]
slice data vertically and clustering: 32%|███▏ | 12/38 [00:08<00:12, 2.13it/s]
slice data vertically and clustering: 34%|███▍ | 13/38 [00:08<00:09, 2.56it/s]
slice data vertically and clustering: 37%|███▋ | 14/38 [00:08<00:07, 3.07it/s]
slice data vertically and clustering: 39%|███▉ | 15/38 [00:08<00:06, 3.68it/s]
slice data vertically and clustering: 42%|████▏ | 16/38 [00:09<00:04, 4.51it/s]
slice data vertically and clustering: 47%|████▋ | 18/38 [00:09<00:03, 6.37it/s]
slice data vertically and clustering: 53%|█████▎ | 20/38 [00:09<00:02, 8.60it/s]
slice data vertically and clustering: 61%|██████ | 23/38 [00:09<00:01, 12.63it/s]
slice data vertically and clustering: 82%|████████▏ | 31/38 [00:09<00:00, 26.78it/s]
slice data vertically and clustering: 100%|██████████| 38/38 [00:09<00:00, 4.00it/s]fitting convex hulls to clusters
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+ 0.00% | 0 / 89 | MMMMMMMMMMMMMMM 74.44% ::::::::::::::::::::::::::::: | 67 / 90 |
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+ 1.12% | 1 / 89 | MMMMMMMMMMMMMMM 74.44% ::::::::::::::::::::::::::::: | 67 / 90 |
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+ 1.12% | 1 / 89 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 74.44% ::::::::::::::::::::::::::::: | 67 / 90 |
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+ 1.12% | 1 / 89 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 74.44% ::::::::::::::::::::::::::::: | 67 / 90 |
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+ 1.12% | 1 / 89 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 74.44% ::::::::::::::::::::::::::::: | 67 / 90 |
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+ 1.11% | 1 / 90 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 62.22% :::::::::::::::::::::::: | 56 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 72.22% :::::::::::::::::::::::::::: | 65 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 86.67% :::::::::::::::::::::::::::::::::: | 78 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 67.42% :::::::::::::::::::::::::: | 60 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 92.13% :::::::::::::::::::::::::::::::::::: | 82 / 89 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 72.22% :::::::::::::::::::::::::::: | 65 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 86.67% :::::::::::::::::::::::::::::::::: | 78 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 67.42% :::::::::::::::::::::::::: | 60 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 92.13% :::::::::::::::::::::::::::::::::::: | 82 / 89 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 72.22% :::::::::::::::::::::::::::: | 65 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 86.67% :::::::::::::::::::::::::::::::::: | 78 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 67.42% :::::::::::::::::::::::::: | 60 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 72.22% :::::::::::::::::::::::::::: | 65 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 67.42% :::::::::::::::::::::::::: | 60 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 72.22% :::::::::::::::::::::::::::: | 65 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 90 / 90 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 89 / 89 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/5 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 5/5 [00:00<00:00, 110.39it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/5 [00:00<?, ?it/s]
20%|██ | 1/5 [00:00<00:01, 3.22it/s]
60%|██████ | 3/5 [00:00<00:00, 7.81it/s]
100%|██████████| 5/5 [00:00<00:00, 7.01it/s]
100%|██████████| 5/5 [00:00<00:00, 6.65it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/070/0.2/070_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/070/0.1/070_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/070/0.0/070_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/070/0.0/070_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/070/0.0/070_T3.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/071.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/071
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/071.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/071
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
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read in neighbouring tiles: 100%|██████████| 8/8 [00:16<00:00, 2.01s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/38 [00:00<?, ?it/s]
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slice data vertically and clustering: 21%|██ | 8/38 [00:07<00:27, 1.08it/s]
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slice data vertically and clustering: 61%|██████ | 23/38 [00:10<00:01, 11.47it/s]
slice data vertically and clustering: 79%|███████▉ | 30/38 [00:10<00:00, 23.20it/s]
slice data vertically and clustering: 100%|██████████| 38/38 [00:10<00:00, 3.70it/s]fitting convex hulls to clusters
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 58.82% ::::::::::::::::::::::: | 60 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 67.65% ::::::::::::::::::::::::::: | 69 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 52.94% ::::::::::::::::::::: | 54 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 58.82% ::::::::::::::::::::::: | 60 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 52.94% ::::::::::::::::::::: | 54 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 52.94% ::::::::::::::::::::: | 54 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 102 / 102 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/2 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 2/2 [00:00<00:00, 97.59it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/2 [00:00<?, ?it/s]
50%|█████ | 1/2 [00:00<00:00, 3.27it/s]
100%|██████████| 2/2 [00:00<00:00, 5.03it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/071/0.1/071_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/071/0.1/071_T0.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/074.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/074
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/074.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/074
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:04, 1.70it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:01<00:05, 1.12it/s]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:04<00:09, 1.86s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:07<00:08, 2.24s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:10<00:07, 2.39s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:13<00:05, 2.56s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:16<00:02, 2.75s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 3.13s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:20<00:00, 2.52s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/42 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/42 [00:00<00:19, 2.12it/s]
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slice data vertically and clustering: 12%|█▏ | 5/42 [00:05<00:45, 1.22s/it]
slice data vertically and clustering: 14%|█▍ | 6/42 [00:06<00:45, 1.25s/it]
slice data vertically and clustering: 17%|█▋ | 7/42 [00:07<00:41, 1.19s/it]
slice data vertically and clustering: 19%|█▉ | 8/42 [00:08<00:35, 1.04s/it]
slice data vertically and clustering: 21%|██▏ | 9/42 [00:08<00:29, 1.13it/s]
slice data vertically and clustering: 24%|██▍ | 10/42 [00:09<00:23, 1.34it/s]
slice data vertically and clustering: 26%|██▌ | 11/42 [00:09<00:19, 1.60it/s]
slice data vertically and clustering: 29%|██▊ | 12/42 [00:09<00:15, 1.96it/s]
slice data vertically and clustering: 31%|███ | 13/42 [00:10<00:12, 2.40it/s]
slice data vertically and clustering: 33%|███▎ | 14/42 [00:10<00:09, 2.97it/s]
slice data vertically and clustering: 36%|███▌ | 15/42 [00:10<00:07, 3.73it/s]
slice data vertically and clustering: 40%|████ | 17/42 [00:10<00:04, 5.52it/s]
slice data vertically and clustering: 45%|████▌ | 19/42 [00:10<00:03, 7.66it/s]
slice data vertically and clustering: 52%|█████▏ | 22/42 [00:10<00:01, 11.49it/s]
slice data vertically and clustering: 67%|██████▋ | 28/42 [00:10<00:00, 20.92it/s]
slice data vertically and clustering: 100%|██████████| 42/42 [00:10<00:00, 3.86it/s]fitting convex hulls to clusters
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+ 94.05% ::::::::::::::::::::::::::::::::::::: | 79 / 84 |
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+ 91.67% :::::::::::::::::::::::::::::::::::: | 77 / 84 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 84 / 84 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 83 / 83 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 4 |
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+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 0.00% | 0 / 4 |
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+ 25.00% :::::::::: | 1 / 4 |
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+ 0.00% | 0 / 3 |
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+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 25.00% :::::::::: | 1 / 4 |
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+ 25.00% :::::::::: | 1 / 4 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/12 [00:00<?, ?it/s]
writing stems to file: 58%|█████▊ | 7/12 [00:00<00:00, 66.67it/s]
writing stems to file: 100%|██████████| 12/12 [00:00<00:00, 81.05it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/12 [00:00<?, ?it/s]
8%|▊ | 1/12 [00:00<00:04, 2.31it/s]
25%|██▌ | 3/12 [00:00<00:01, 5.39it/s]
42%|████▏ | 5/12 [00:00<00:00, 8.53it/s]
58%|█████▊ | 7/12 [00:00<00:00, 9.42it/s]
75%|███████▌ | 9/12 [00:01<00:00, 11.46it/s]
92%|█████████▏| 11/12 [00:01<00:00, 10.05it/s]
100%|██████████| 12/12 [00:01<00:00, 8.79it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/074/0.4/074_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/074/0.1/074_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/074/0.0/074_T11.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/074/0.0/074_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/074/0.1/074_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/074/0.3/074_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/074/0.2/074_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/074/0.1/074_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/074/0.2/074_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/074/0.0/074_T10.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/074/0.0/074_T9.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/074/0.4/074_T0.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/085.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/085
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/085.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/085
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:09, 1.40s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:08, 1.37s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:04<00:07, 1.46s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:06<00:07, 1.85s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:10<00:07, 2.53s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:12<00:04, 2.49s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:15<00:02, 2.59s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:19<00:00, 2.85s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:19<00:00, 2.39s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/42 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/42 [00:00<00:10, 4.06it/s]
slice data vertically and clustering: 5%|▍ | 2/42 [00:00<00:15, 2.56it/s]
slice data vertically and clustering: 7%|▋ | 3/42 [00:01<00:20, 1.90it/s]
slice data vertically and clustering: 10%|▉ | 4/42 [00:02<00:24, 1.55it/s]
slice data vertically and clustering: 12%|█▏ | 5/42 [00:03<00:29, 1.23it/s]
slice data vertically and clustering: 14%|█▍ | 6/42 [00:04<00:31, 1.16it/s]
slice data vertically and clustering: 17%|█▋ | 7/42 [00:05<00:28, 1.24it/s]
slice data vertically and clustering: 19%|█▉ | 8/42 [00:05<00:24, 1.37it/s]
slice data vertically and clustering: 21%|██▏ | 9/42 [00:06<00:21, 1.55it/s]
slice data vertically and clustering: 24%|██▍ | 10/42 [00:06<00:17, 1.80it/s]
slice data vertically and clustering: 26%|██▌ | 11/42 [00:06<00:14, 2.17it/s]
slice data vertically and clustering: 29%|██▊ | 12/42 [00:06<00:11, 2.62it/s]
slice data vertically and clustering: 31%|███ | 13/42 [00:06<00:09, 3.18it/s]
slice data vertically and clustering: 33%|███▎ | 14/42 [00:07<00:07, 3.87it/s]
slice data vertically and clustering: 38%|███▊ | 16/42 [00:07<00:04, 5.56it/s]
slice data vertically and clustering: 43%|████▎ | 18/42 [00:07<00:03, 7.61it/s]
slice data vertically and clustering: 50%|█████ | 21/42 [00:07<00:01, 11.34it/s]
slice data vertically and clustering: 62%|██████▏ | 26/42 [00:07<00:00, 18.97it/s]
slice data vertically and clustering: 100%|██████████| 42/42 [00:07<00:00, 5.45it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+MMMMMMMMMMMMMMM 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 1.32% | 1 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 76 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 |
+ 0.00% | 0 / 75 | MMMMMMMMMMMMMMM 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 71.05% :::::::::::::::::::::::::::: | 54 / 76 |
+ 1.32% | 1 / 76 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 | MMMMMMMMMMMMMMM 86.84% :::::::::::::::::::::::::::::::::: | 66 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 64 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 71.05% :::::::::::::::::::::::::::: | 54 / 76 |
+ 94.74% ::::::::::::::::::::::::::::::::::::: | 72 / 76 |
+ 92.00% :::::::::::::::::::::::::::::::::::: | 69 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 98.67% ::::::::::::::::::::::::::::::::::::::: | 74 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 98.67% ::::::::::::::::::::::::::::::::::::::: | 74 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 64 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 71.05% :::::::::::::::::::::::::::: | 54 / 76 |
+ 94.74% ::::::::::::::::::::::::::::::::::::: | 72 / 76 |
+ 92.00% :::::::::::::::::::::::::::::::::::: | 69 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 98.67% ::::::::::::::::::::::::::::::::::::::: | 74 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 98.67% ::::::::::::::::::::::::::::::::::::::: | 74 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 64 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 71.05% :::::::::::::::::::::::::::: | 54 / 76 |
+ 94.74% ::::::::::::::::::::::::::::::::::::: | 72 / 76 |
+ 92.00% :::::::::::::::::::::::::::::::::::: | 69 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 98.67% ::::::::::::::::::::::::::::::::::::::: | 74 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 98.67% ::::::::::::::::::::::::::::::::::::::: | 74 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 64 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 71.05% :::::::::::::::::::::::::::: | 54 / 76 |
+ 94.74% ::::::::::::::::::::::::::::::::::::: | 72 / 76 |
+ 92.00% :::::::::::::::::::::::::::::::::::: | 69 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 98.67% ::::::::::::::::::::::::::::::::::::::: | 74 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 64 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 71.05% :::::::::::::::::::::::::::: | 54 / 76 |
+ 94.74% ::::::::::::::::::::::::::::::::::::: | 72 / 76 |
+ 92.00% :::::::::::::::::::::::::::::::::::: | 69 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 98.67% ::::::::::::::::::::::::::::::::::::::: | 74 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 64 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 71.05% :::::::::::::::::::::::::::: | 54 / 76 |
+ 94.74% ::::::::::::::::::::::::::::::::::::: | 72 / 76 |
+ 92.00% :::::::::::::::::::::::::::::::::::: | 69 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 98.67% ::::::::::::::::::::::::::::::::::::::: | 74 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 64 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 71.05% :::::::::::::::::::::::::::: | 54 / 76 |
+ 94.74% ::::::::::::::::::::::::::::::::::::: | 72 / 76 |
+ 92.00% :::::::::::::::::::::::::::::::::::: | 69 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 64 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 71.05% :::::::::::::::::::::::::::: | 54 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 92.00% :::::::::::::::::::::::::::::::::::: | 69 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 64 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 71.05% :::::::::::::::::::::::::::: | 54 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 92.00% :::::::::::::::::::::::::::::::::::: | 69 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 64 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 71.05% :::::::::::::::::::::::::::: | 54 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 92.00% :::::::::::::::::::::::::::::::::::: | 69 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 64 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 1.32% | 1 / 76 |
+ 1.32% | 1 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 92.00% :::::::::::::::::::::::::::::::::::: | 69 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 64 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 1.32% | 1 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 92.00% :::::::::::::::::::::::::::::::::::: | 69 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 64 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 92.00% :::::::::::::::::::::::::::::::::::: | 69 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 64 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 1.33% | 1 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 84.21% ::::::::::::::::::::::::::::::::: | 64 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 76 / 76 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 75 / 75 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 50.00% :::::::::::::::::::: | 2 / 4 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/3 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 3/3 [00:00<00:00, 100.70it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/3 [00:00<?, ?it/s]
33%|███▎ | 1/3 [00:00<00:00, 2.97it/s]
100%|██████████| 3/3 [00:00<00:00, 6.15it/s]
100%|██████████| 3/3 [00:00<00:00, 5.55it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/085/0.3/085_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/085/0.1/085_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/085/0.2/085_T1.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/098.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/098
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/098.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/098
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:10, 1.44s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:08, 1.41s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:03<00:06, 1.27s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:07<00:08, 2.04s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:08<00:05, 1.97s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:12<00:04, 2.37s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:14<00:02, 2.40s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.58s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:17<00:00, 2.20s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/42 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/42 [00:00<00:12, 3.23it/s]
slice data vertically and clustering: 5%|▍ | 2/42 [00:00<00:18, 2.12it/s]
slice data vertically and clustering: 7%|▋ | 3/42 [00:01<00:23, 1.63it/s]
slice data vertically and clustering: 10%|▉ | 4/42 [00:02<00:30, 1.23it/s]
slice data vertically and clustering: 12%|█▏ | 5/42 [00:04<00:35, 1.03it/s]
slice data vertically and clustering: 14%|█▍ | 6/42 [00:05<00:36, 1.01s/it]
slice data vertically and clustering: 17%|█▋ | 7/42 [00:05<00:31, 1.09it/s]
slice data vertically and clustering: 19%|█▉ | 8/42 [00:06<00:27, 1.24it/s]
slice data vertically and clustering: 21%|██▏ | 9/42 [00:06<00:22, 1.45it/s]
slice data vertically and clustering: 24%|██▍ | 10/42 [00:07<00:18, 1.72it/s]
slice data vertically and clustering: 26%|██▌ | 11/42 [00:07<00:14, 2.10it/s]
slice data vertically and clustering: 29%|██▊ | 12/42 [00:07<00:11, 2.54it/s]
slice data vertically and clustering: 31%|███ | 13/42 [00:07<00:09, 3.09it/s]
slice data vertically and clustering: 33%|███▎ | 14/42 [00:07<00:07, 3.79it/s]
slice data vertically and clustering: 38%|███▊ | 16/42 [00:08<00:04, 5.57it/s]
slice data vertically and clustering: 43%|████▎ | 18/42 [00:08<00:03, 7.66it/s]
slice data vertically and clustering: 50%|█████ | 21/42 [00:08<00:01, 11.50it/s]
slice data vertically and clustering: 67%|██████▋ | 28/42 [00:08<00:00, 22.93it/s]
slice data vertically and clustering: 100%|██████████| 42/42 [00:08<00:00, 4.97it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 87 |
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+ 0.00% | 0 / 86 |
+MMMMMMMMMMMMMMM 0.00% | 0 / 87 |
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+ 0.00% | 0 / 86 |
+ 0.00% | 0 / 86 | MMMMMMMMMMMMMMM 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 63.22% ::::::::::::::::::::::::: | 55 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
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+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 1.16% | 1 / 86 |
+ 1.16% | 1 / 86 | MMMMMMMMMMMMMMM 1.15% | 1 / 87 |
+ 74.71% ::::::::::::::::::::::::::::: | 65 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 81.61% :::::::::::::::::::::::::::::::: | 71 / 87 |
+ 1.15% | 1 / 87 |
+ 1.15% | 1 / 87 |
+ 66.67% :::::::::::::::::::::::::: | 58 / 87 |
+ 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 71.26% :::::::::::::::::::::::::::: | 62 / 87 |
+ 87.36% :::::::::::::::::::::::::::::::::: | 76 / 87 |
+ 83.91% ::::::::::::::::::::::::::::::::: | 73 / 87 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 93.10% ::::::::::::::::::::::::::::::::::::: | 81 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 90.70% :::::::::::::::::::::::::::::::::::: | 78 / 86 |
+ 96.51% :::::::::::::::::::::::::::::::::::::: | 83 / 86 | MMMMMMMMMMMMMMM 1.15% | 1 / 87 |
+ 74.71% ::::::::::::::::::::::::::::: | 65 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 81.61% :::::::::::::::::::::::::::::::: | 71 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 1.15% | 1 / 87 |
+ 66.67% :::::::::::::::::::::::::: | 58 / 87 |
+ 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 71.26% :::::::::::::::::::::::::::: | 62 / 87 |
+ 87.36% :::::::::::::::::::::::::::::::::: | 76 / 87 |
+ 83.91% ::::::::::::::::::::::::::::::::: | 73 / 87 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 93.10% ::::::::::::::::::::::::::::::::::::: | 81 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 90.70% :::::::::::::::::::::::::::::::::::: | 78 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 74.71% ::::::::::::::::::::::::::::: | 65 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 81.61% :::::::::::::::::::::::::::::::: | 71 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 1.15% | 1 / 87 |
+ 66.67% :::::::::::::::::::::::::: | 58 / 87 |
+ 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 71.26% :::::::::::::::::::::::::::: | 62 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.91% ::::::::::::::::::::::::::::::::: | 73 / 87 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 93.10% ::::::::::::::::::::::::::::::::::::: | 81 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 90.70% :::::::::::::::::::::::::::::::::::: | 78 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 74.71% ::::::::::::::::::::::::::::: | 65 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 88.51% ::::::::::::::::::::::::::::::::::: | 77 / 87 |
+ 66.67% :::::::::::::::::::::::::: | 58 / 87 |
+ 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 71.26% :::::::::::::::::::::::::::: | 62 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.91% ::::::::::::::::::::::::::::::::: | 73 / 87 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 93.10% ::::::::::::::::::::::::::::::::::::: | 81 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 90.70% :::::::::::::::::::::::::::::::::::: | 78 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 74.71% ::::::::::::::::::::::::::::: | 65 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 88.51% ::::::::::::::::::::::::::::::::::: | 77 / 87 |
+ 66.67% :::::::::::::::::::::::::: | 58 / 87 |
+ 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 71.26% :::::::::::::::::::::::::::: | 62 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.91% ::::::::::::::::::::::::::::::::: | 73 / 87 |
+ 90.80% :::::::::::::::::::::::::::::::::::: | 79 / 87 |
+ 93.10% ::::::::::::::::::::::::::::::::::::: | 81 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 74.71% ::::::::::::::::::::::::::::: | 65 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 88.51% ::::::::::::::::::::::::::::::::::: | 77 / 87 |
+ 66.67% :::::::::::::::::::::::::: | 58 / 87 |
+ 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 71.26% :::::::::::::::::::::::::::: | 62 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.91% ::::::::::::::::::::::::::::::::: | 73 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 93.10% ::::::::::::::::::::::::::::::::::::: | 81 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 74.71% ::::::::::::::::::::::::::::: | 65 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 88.51% ::::::::::::::::::::::::::::::::::: | 77 / 87 |
+ 66.67% :::::::::::::::::::::::::: | 58 / 87 |
+ 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 71.26% :::::::::::::::::::::::::::: | 62 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.91% ::::::::::::::::::::::::::::::::: | 73 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 88.51% ::::::::::::::::::::::::::::::::::: | 77 / 87 |
+ 66.67% :::::::::::::::::::::::::: | 58 / 87 |
+ 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 71.26% :::::::::::::::::::::::::::: | 62 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.91% ::::::::::::::::::::::::::::::::: | 73 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 88.51% ::::::::::::::::::::::::::::::::::: | 77 / 87 |
+ 66.67% :::::::::::::::::::::::::: | 58 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 71.26% :::::::::::::::::::::::::::: | 62 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 83.91% ::::::::::::::::::::::::::::::::: | 73 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 88.51% ::::::::::::::::::::::::::::::::::: | 77 / 87 |
+ 66.67% :::::::::::::::::::::::::: | 58 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 71.26% :::::::::::::::::::::::::::: | 62 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 88.51% ::::::::::::::::::::::::::::::::::: | 77 / 87 |
+ 66.67% :::::::::::::::::::::::::: | 58 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 71.26% :::::::::::::::::::::::::::: | 62 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 88.51% ::::::::::::::::::::::::::::::::::: | 77 / 87 |
+ 66.67% :::::::::::::::::::::::::: | 58 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 75.86% :::::::::::::::::::::::::::::: | 66 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 66.67% :::::::::::::::::::::::::: | 58 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 79.31% ::::::::::::::::::::::::::::::: | 69 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 66.67% :::::::::::::::::::::::::: | 58 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 66.67% :::::::::::::::::::::::::: | 58 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 87 / 87 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 86 / 86 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/3 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 3/3 [00:00<00:00, 102.50it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/3 [00:00<?, ?it/s]
33%|███▎ | 1/3 [00:00<00:00, 4.53it/s]
100%|██████████| 3/3 [00:00<00:00, 8.22it/s]
100%|██████████| 3/3 [00:00<00:00, 7.59it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/098/0.1/098_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/098/0.1/098_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/098/0.2/098_T0.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/104.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/104
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/104.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/104
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:06, 1.14it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:01<00:05, 1.11it/s]
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read in neighbouring tiles: 75%|███████▌ | 6/8 [00:08<00:03, 1.81s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:11<00:02, 2.18s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:14<00:00, 2.56s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:14<00:00, 1.83s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/40 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▎ | 1/40 [00:00<00:18, 2.10it/s]
slice data vertically and clustering: 5%|▌ | 2/40 [00:01<00:24, 1.58it/s]
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slice data vertically and clustering: 10%|█ | 4/40 [00:03<00:36, 1.02s/it]
slice data vertically and clustering: 12%|█▎ | 5/40 [00:05<00:41, 1.19s/it]
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slice data vertically and clustering: 18%|█▊ | 7/40 [00:07<00:38, 1.17s/it]
slice data vertically and clustering: 20%|██ | 8/40 [00:08<00:32, 1.02s/it]
slice data vertically and clustering: 22%|██▎ | 9/40 [00:08<00:26, 1.15it/s]
slice data vertically and clustering: 25%|██▌ | 10/40 [00:09<00:22, 1.36it/s]
slice data vertically and clustering: 28%|██▊ | 11/40 [00:09<00:17, 1.63it/s]
slice data vertically and clustering: 30%|███ | 12/40 [00:09<00:14, 1.98it/s]
slice data vertically and clustering: 32%|███▎ | 13/40 [00:09<00:11, 2.41it/s]
slice data vertically and clustering: 35%|███▌ | 14/40 [00:10<00:08, 2.97it/s]
slice data vertically and clustering: 38%|███▊ | 15/40 [00:10<00:06, 3.65it/s]
slice data vertically and clustering: 42%|████▎ | 17/40 [00:10<00:04, 5.39it/s]
slice data vertically and clustering: 48%|████▊ | 19/40 [00:10<00:02, 7.35it/s]
slice data vertically and clustering: 55%|█████▌ | 22/40 [00:10<00:01, 11.06it/s]
slice data vertically and clustering: 75%|███████▌ | 30/40 [00:10<00:00, 24.16it/s]
slice data vertically and clustering: 100%|██████████| 40/40 [00:10<00:00, 3.73it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 99 |
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+ 0.00% | 0 / 98 | MMMMMMMMMMMMMMM 69.70% ::::::::::::::::::::::::::: | 69 / 99 |
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+ 1.02% | 1 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 1.01% | 1 / 99 |
+ 73.74% ::::::::::::::::::::::::::::: | 73 / 99 |
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+ 72.45% :::::::::::::::::::::::::::: | 71 / 98 |
+ 85.71% :::::::::::::::::::::::::::::::::: | 84 / 98 |
+ 1.02% | 1 / 98 |
+ 78.57% ::::::::::::::::::::::::::::::: | 77 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 1.01% | 1 / 99 |
+ 73.74% ::::::::::::::::::::::::::::: | 73 / 99 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
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+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
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+ 72.45% :::::::::::::::::::::::::::: | 71 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 78.57% ::::::::::::::::::::::::::::::: | 77 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 1.01% | 1 / 99 |
+ 73.74% ::::::::::::::::::::::::::::: | 73 / 99 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 76.53% :::::::::::::::::::::::::::::: | 75 / 98 |
+ 83.67% ::::::::::::::::::::::::::::::::: | 82 / 98 |
+ 75.51% :::::::::::::::::::::::::::::: | 74 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
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+ 72.45% :::::::::::::::::::::::::::: | 71 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 78.57% ::::::::::::::::::::::::::::::: | 77 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 1.01% | 1 / 99 |
+ 73.74% ::::::::::::::::::::::::::::: | 73 / 99 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 76.53% :::::::::::::::::::::::::::::: | 75 / 98 |
+ 83.67% ::::::::::::::::::::::::::::::::: | 82 / 98 |
+ 75.51% :::::::::::::::::::::::::::::: | 74 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 79.59% ::::::::::::::::::::::::::::::: | 78 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 72.45% :::::::::::::::::::::::::::: | 71 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 1.01% | 1 / 99 |
+ 73.74% ::::::::::::::::::::::::::::: | 73 / 99 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 76.53% :::::::::::::::::::::::::::::: | 75 / 98 |
+ 83.67% ::::::::::::::::::::::::::::::::: | 82 / 98 |
+ 75.51% :::::::::::::::::::::::::::::: | 74 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 72.45% :::::::::::::::::::::::::::: | 71 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 1.01% | 1 / 99 |
+ 73.74% ::::::::::::::::::::::::::::: | 73 / 99 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 76.53% :::::::::::::::::::::::::::::: | 75 / 98 |
+ 83.67% ::::::::::::::::::::::::::::::::: | 82 / 98 |
+ 75.51% :::::::::::::::::::::::::::::: | 74 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 1.01% | 1 / 99 |
+ 73.74% ::::::::::::::::::::::::::::: | 73 / 99 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 83.67% ::::::::::::::::::::::::::::::::: | 82 / 98 |
+ 75.51% :::::::::::::::::::::::::::::: | 74 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 1.01% | 1 / 99 |
+ 73.74% ::::::::::::::::::::::::::::: | 73 / 99 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 75.51% :::::::::::::::::::::::::::::: | 74 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 73.74% ::::::::::::::::::::::::::::: | 73 / 99 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 75.51% :::::::::::::::::::::::::::::: | 74 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 75.51% :::::::::::::::::::::::::::::: | 74 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 75.51% :::::::::::::::::::::::::::::: | 74 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 56.12% :::::::::::::::::::::: | 55 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 80.81% :::::::::::::::::::::::::::::::: | 80 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 1.02% | 1 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 84.69% ::::::::::::::::::::::::::::::::: | 83 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 99 / 99 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 98 / 98 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/5 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 5/5 [00:00<00:00, 94.19it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/5 [00:00<?, ?it/s]
20%|██ | 1/5 [00:00<00:00, 7.08it/s]
60%|██████ | 3/5 [00:00<00:00, 11.28it/s]
100%|██████████| 5/5 [00:00<00:00, 13.65it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/104/0.1/104_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/104/0.3/104_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/104/0.2/104_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/104/0.0/104_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/104/0.0/104_T3.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/125.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/125
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/125.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/125
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
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read in neighbouring tiles: 100%|██████████| 8/8 [00:09<00:00, 1.19s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/36 [00:00<?, ?it/s]
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slice data vertically and clustering: 39%|███▉ | 14/36 [00:04<00:03, 5.88it/s]
slice data vertically and clustering: 44%|████▍ | 16/36 [00:04<00:02, 7.96it/s]
slice data vertically and clustering: 53%|█████▎ | 19/36 [00:04<00:01, 11.98it/s]
slice data vertically and clustering: 75%|███████▌ | 27/36 [00:04<00:00, 25.85it/s]
slice data vertically and clustering: 100%|██████████| 36/36 [00:04<00:00, 7.25it/s]fitting convex hulls to clusters
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+ 1.27% | 1 / 79 |
+ 0.00% | 0 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 98.73% ::::::::::::::::::::::::::::::::::::::: | 78 / 79 |
+ 96.20% :::::::::::::::::::::::::::::::::::::: | 76 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 0.00% | 0 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 98.73% ::::::::::::::::::::::::::::::::::::::: | 78 / 79 |
+ 96.20% :::::::::::::::::::::::::::::::::::::: | 76 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 96.20% :::::::::::::::::::::::::::::::::::::: | 76 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/9 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 9/9 [00:00<00:00, 116.00it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/9 [00:00<?, ?it/s]
11%|█ | 1/9 [00:00<00:01, 4.21it/s]
33%|███▎ | 3/9 [00:00<00:00, 10.05it/s]
78%|███████▊ | 7/9 [00:00<00:00, 19.60it/s]
100%|██████████| 9/9 [00:00<00:00, 17.56it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/125/0.5/125_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/125/0.2/125_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/125/0.1/125_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/125/0.1/125_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/125/0.1/125_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/125/0.0/125_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/125/0.3/125_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/125/0.1/125_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/125/0.0/125_T7.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/140.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/140
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/140.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/140
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:02, 2.37it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:00<00:02, 2.06it/s]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:01<00:03, 1.50it/s]
read in neighbouring tiles: 50%|█████ | 4/8 [00:02<00:02, 1.36it/s]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:03<00:02, 1.26it/s]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:05<00:02, 1.25s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:08<00:01, 1.64s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:11<00:00, 2.05s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:11<00:00, 1.39s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/41 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/41 [00:00<00:04, 8.21it/s]
slice data vertically and clustering: 5%|▍ | 2/41 [00:00<00:07, 5.24it/s]
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slice data vertically and clustering: 12%|█▏ | 5/41 [00:02<00:19, 1.88it/s]
slice data vertically and clustering: 15%|█▍ | 6/41 [00:02<00:19, 1.84it/s]
slice data vertically and clustering: 17%|█▋ | 7/41 [00:03<00:17, 1.97it/s]
slice data vertically and clustering: 20%|█▉ | 8/41 [00:03<00:15, 2.20it/s]
slice data vertically and clustering: 22%|██▏ | 9/41 [00:03<00:12, 2.59it/s]
slice data vertically and clustering: 24%|██▍ | 10/41 [00:03<00:10, 3.09it/s]
slice data vertically and clustering: 27%|██▋ | 11/41 [00:04<00:08, 3.70it/s]
slice data vertically and clustering: 29%|██▉ | 12/41 [00:04<00:06, 4.44it/s]
slice data vertically and clustering: 34%|███▍ | 14/41 [00:04<00:04, 6.36it/s]
slice data vertically and clustering: 41%|████▏ | 17/41 [00:04<00:02, 9.91it/s]
slice data vertically and clustering: 54%|█████▎ | 22/41 [00:04<00:01, 17.52it/s]
slice data vertically and clustering: 100%|██████████| 41/41 [00:04<00:00, 8.82it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 80 |
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+ 0.00% | 0 / 79 | MMMMMMMMMMMMMMM 87.50% ::::::::::::::::::::::::::::::::::: | 70 / 80 |
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+ 1.27% | 1 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 95.00% :::::::::::::::::::::::::::::::::::::: | 76 / 80 |
+ 1.25% | 1 / 80 |
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+ 1.25% | 1 / 80 |
+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
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+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 70 / 80 |
+ 1.25% | 1 / 80 |
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+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 77.50% ::::::::::::::::::::::::::::::: | 62 / 80 |
+ 1.25% | 1 / 80 |
+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 95.00% :::::::::::::::::::::::::::::::::::::: | 76 / 80 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 70 / 80 |
+ 1.25% | 1 / 80 |
+ 91.25% :::::::::::::::::::::::::::::::::::: | 73 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 77.50% ::::::::::::::::::::::::::::::: | 62 / 80 |
+ 1.25% | 1 / 80 |
+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 95.00% :::::::::::::::::::::::::::::::::::::: | 76 / 80 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 70 / 80 |
+ 96.25% :::::::::::::::::::::::::::::::::::::: | 77 / 80 |
+ 91.25% :::::::::::::::::::::::::::::::::::: | 73 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 77.50% ::::::::::::::::::::::::::::::: | 62 / 80 |
+ 97.50% ::::::::::::::::::::::::::::::::::::::: | 78 / 80 |
+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 95.00% :::::::::::::::::::::::::::::::::::::: | 76 / 80 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 70 / 80 |
+ 96.25% :::::::::::::::::::::::::::::::::::::: | 77 / 80 |
+ 91.25% :::::::::::::::::::::::::::::::::::: | 73 / 80 |
+ 1.25% | 1 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 77.50% ::::::::::::::::::::::::::::::: | 62 / 80 |
+ 97.50% ::::::::::::::::::::::::::::::::::::::: | 78 / 80 |
+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 95.00% :::::::::::::::::::::::::::::::::::::: | 76 / 80 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 70 / 80 |
+ 96.25% :::::::::::::::::::::::::::::::::::::: | 77 / 80 |
+ 91.25% :::::::::::::::::::::::::::::::::::: | 73 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 77.50% ::::::::::::::::::::::::::::::: | 62 / 80 |
+ 97.50% ::::::::::::::::::::::::::::::::::::::: | 78 / 80 |
+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 95.00% :::::::::::::::::::::::::::::::::::::: | 76 / 80 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 70 / 80 |
+ 96.25% :::::::::::::::::::::::::::::::::::::: | 77 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 77.50% ::::::::::::::::::::::::::::::: | 62 / 80 |
+ 97.50% ::::::::::::::::::::::::::::::::::::::: | 78 / 80 |
+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 95.00% :::::::::::::::::::::::::::::::::::::: | 76 / 80 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 70 / 80 |
+ 96.25% :::::::::::::::::::::::::::::::::::::: | 77 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 77.50% ::::::::::::::::::::::::::::::: | 62 / 80 |
+ 97.50% ::::::::::::::::::::::::::::::::::::::: | 78 / 80 |
+ 1.27% | 1 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 95.00% :::::::::::::::::::::::::::::::::::::: | 76 / 80 |
+ 87.50% ::::::::::::::::::::::::::::::::::: | 70 / 80 |
+ 96.25% :::::::::::::::::::::::::::::::::::::: | 77 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
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+ 97.50% ::::::::::::::::::::::::::::::::::::::: | 78 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
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+ 97.50% ::::::::::::::::::::::::::::::::::::::: | 78 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 95.00% :::::::::::::::::::::::::::::::::::::: | 76 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 96.25% :::::::::::::::::::::::::::::::::::::: | 77 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 77.50% ::::::::::::::::::::::::::::::: | 62 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 95.00% :::::::::::::::::::::::::::::::::::::: | 76 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 1.27% | 1 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 80 / 80 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 79 / 79 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 80.00% :::::::::::::::::::::::::::::::: | 4 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 5 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/8 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 8/8 [00:00<00:00, 129.19it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/8 [00:00<?, ?it/s]
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38%|███▊ | 3/8 [00:00<00:00, 9.50it/s]
75%|███████▌ | 6/8 [00:00<00:00, 16.20it/s]
100%|██████████| 8/8 [00:00<00:00, 15.07it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/140/0.2/140_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/140/0.4/140_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/140/0.0/140_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/140/0.1/140_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/140/0.0/140_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/140/0.1/140_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/140/0.0/140_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/140/0.0/140_T5.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/151.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/151
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/151.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/151
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:04, 1.71it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:08, 1.42s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:03<00:06, 1.39s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:05<00:06, 1.60s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:07<00:05, 1.76s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:10<00:04, 2.14s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:13<00:02, 2.20s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:15<00:00, 2.35s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:15<00:00, 1.97s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/41 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/41 [00:00<00:04, 9.04it/s]
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slice data vertically and clustering: 7%|▋ | 3/41 [00:00<00:13, 2.79it/s]
slice data vertically and clustering: 10%|▉ | 4/41 [00:01<00:18, 2.00it/s]
slice data vertically and clustering: 12%|█▏ | 5/41 [00:02<00:21, 1.66it/s]
slice data vertically and clustering: 15%|█▍ | 6/41 [00:03<00:21, 1.66it/s]
slice data vertically and clustering: 17%|█▋ | 7/41 [00:03<00:18, 1.81it/s]
slice data vertically and clustering: 20%|█▉ | 8/41 [00:03<00:15, 2.12it/s]
slice data vertically and clustering: 22%|██▏ | 9/41 [00:04<00:12, 2.53it/s]
slice data vertically and clustering: 24%|██▍ | 10/41 [00:04<00:10, 3.05it/s]
slice data vertically and clustering: 27%|██▋ | 11/41 [00:04<00:08, 3.70it/s]
slice data vertically and clustering: 32%|███▏ | 13/41 [00:04<00:05, 5.43it/s]
slice data vertically and clustering: 37%|███▋ | 15/41 [00:04<00:03, 7.61it/s]
slice data vertically and clustering: 46%|████▋ | 19/41 [00:04<00:01, 13.38it/s]
slice data vertically and clustering: 71%|███████ | 29/41 [00:04<00:00, 30.55it/s]
slice data vertically and clustering: 100%|██████████| 41/41 [00:04<00:00, 8.47it/s]fitting convex hulls to clusters
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 57 / 57 | identifying stems...
+fitting cylinders to possible stems...
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+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 2 |
+ 0.00% | 0 / 2 |
+ 0.00% | 0 / 2 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 50.00% :::::::::::::::::::: | 1 / 2 |
+ 50.00% :::::::::::::::::::: | 1 / 2 |
+ 50.00% :::::::::::::::::::: | 1 / 2 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 50.00% :::::::::::::::::::: | 1 / 2 |
+ 50.00% :::::::::::::::::::: | 1 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 50.00% :::::::::::::::::::: | 1 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 2 / 2 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/16 [00:00<?, ?it/s]
writing stems to file: 56%|█████▋ | 9/16 [00:00<00:00, 87.25it/s]
writing stems to file: 100%|██████████| 16/16 [00:00<00:00, 102.23it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/16 [00:00<?, ?it/s]
6%|▋ | 1/16 [00:00<00:04, 3.23it/s]
12%|█▎ | 2/16 [00:00<00:02, 4.81it/s]
25%|██▌ | 4/16 [00:00<00:01, 8.44it/s]
38%|███▊ | 6/16 [00:00<00:00, 10.83it/s]
50%|█████ | 8/16 [00:00<00:00, 11.69it/s]
62%|██████▎ | 10/16 [00:01<00:00, 12.34it/s]
81%|████████▏ | 13/16 [00:01<00:00, 14.28it/s]
94%|█████████▍| 15/16 [00:01<00:00, 10.98it/s]
100%|██████████| 16/16 [00:01<00:00, 10.69it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/151/0.3/151_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/151/0.3/151_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/151/0.1/151_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/151/0.1/151_T6.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/151/0.0/151_T8.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/151/0.2/151_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/151/0.3/151_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/151/0.1/151_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/151/0.0/151_T14.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/151/0.0/151_T12.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/151/0.0/151_T15.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/151/0.0/151_T9.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/151/0.1/151_T7.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/151/0.0/151_T11.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/151/0.0/151_T13.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/151/0.0/151_T10.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/162.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/162
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/162.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/162
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:02, 2.95it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:00<00:02, 2.24it/s]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:01<00:02, 1.94it/s]
read in neighbouring tiles: 50%|█████ | 4/8 [00:02<00:02, 1.45it/s]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:03<00:02, 1.29it/s]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:04<00:01, 1.03it/s]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:06<00:01, 1.20s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:08<00:00, 1.62s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:08<00:00, 1.11s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/41 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/41 [00:00<00:05, 7.01it/s]
slice data vertically and clustering: 5%|▍ | 2/41 [00:00<00:08, 4.35it/s]
slice data vertically and clustering: 7%|▋ | 3/41 [00:00<00:12, 2.98it/s]
slice data vertically and clustering: 10%|▉ | 4/41 [00:01<00:16, 2.28it/s]
slice data vertically and clustering: 12%|█▏ | 5/41 [00:02<00:19, 1.88it/s]
slice data vertically and clustering: 15%|█▍ | 6/41 [00:02<00:18, 1.89it/s]
slice data vertically and clustering: 17%|█▋ | 7/41 [00:03<00:15, 2.13it/s]
slice data vertically and clustering: 20%|█▉ | 8/41 [00:03<00:12, 2.55it/s]
slice data vertically and clustering: 22%|██▏ | 9/41 [00:03<00:10, 3.04it/s]
slice data vertically and clustering: 24%|██▍ | 10/41 [00:03<00:08, 3.61it/s]
slice data vertically and clustering: 27%|██▋ | 11/41 [00:03<00:06, 4.31it/s]
slice data vertically and clustering: 32%|███▏ | 13/41 [00:03<00:04, 6.08it/s]
slice data vertically and clustering: 37%|███▋ | 15/41 [00:04<00:03, 8.10it/s]
slice data vertically and clustering: 44%|████▍ | 18/41 [00:04<00:01, 12.02it/s]
slice data vertically and clustering: 63%|██████▎ | 26/41 [00:04<00:00, 25.83it/s]
slice data vertically and clustering: 100%|██████████| 41/41 [00:04<00:00, 9.47it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+MMMMMMMMMMMMMMM 0.00% | 0 / 74 |
+ 1.35% | 1 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 |
+ 0.00% | 0 / 74 | MMMMMMMMMMMMMMM 1.35% | 1 / 74 |
+ 94.59% ::::::::::::::::::::::::::::::::::::: | 70 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 | MMMMMMMMMMMMMMM 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 67.57% ::::::::::::::::::::::::::: | 50 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 | MMMMMMMMMMMMMMM 93.24% ::::::::::::::::::::::::::::::::::::: | 69 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 67.57% ::::::::::::::::::::::::::: | 50 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 | MMMMMMMMMMMMMMM 93.24% ::::::::::::::::::::::::::::::::::::: | 69 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 67.57% ::::::::::::::::::::::::::: | 50 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 | MMMMMMMMMMMMMMM 93.24% ::::::::::::::::::::::::::::::::::::: | 69 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 67.57% ::::::::::::::::::::::::::: | 50 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 | MMMMMMMMMMMMMMM 93.24% ::::::::::::::::::::::::::::::::::::: | 69 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 95.95% :::::::::::::::::::::::::::::::::::::: | 71 / 74 |
+ 67.57% ::::::::::::::::::::::::::: | 50 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 89.19% ::::::::::::::::::::::::::::::::::: | 66 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 95.95% :::::::::::::::::::::::::::::::::::::: | 71 / 74 |
+ 67.57% ::::::::::::::::::::::::::: | 50 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 89.19% ::::::::::::::::::::::::::::::::::: | 66 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 95.95% :::::::::::::::::::::::::::::::::::::: | 71 / 74 |
+ 67.57% ::::::::::::::::::::::::::: | 50 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 89.19% ::::::::::::::::::::::::::::::::::: | 66 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 95.95% :::::::::::::::::::::::::::::::::::::: | 71 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 89.19% ::::::::::::::::::::::::::::::::::: | 66 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 83.78% ::::::::::::::::::::::::::::::::: | 62 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 95.95% :::::::::::::::::::::::::::::::::::::: | 71 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 89.19% ::::::::::::::::::::::::::::::::::: | 66 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 83.78% ::::::::::::::::::::::::::::::::: | 62 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 95.95% :::::::::::::::::::::::::::::::::::::: | 71 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 89.19% ::::::::::::::::::::::::::::::::::: | 66 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 83.78% ::::::::::::::::::::::::::::::::: | 62 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 89.19% ::::::::::::::::::::::::::::::::::: | 66 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 83.78% ::::::::::::::::::::::::::::::::: | 62 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 83.78% ::::::::::::::::::::::::::::::::: | 62 / 74 |
+ 1.35% | 1 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 83.78% ::::::::::::::::::::::::::::::::: | 62 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 83.78% ::::::::::::::::::::::::::::::::: | 62 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.35% | 1 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 0.00% | 0 / 5 |
+ 0.00% | 0 / 5 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 | MMMMMMMMMMMMMMM 20.00% :::::::: | 1 / 5 |
+ 20.00% :::::::: | 1 / 5 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 | MMMMMMMMMMMMMMM 40.00% :::::::::::::::: | 2 / 5 |
+ 40.00% :::::::::::::::: | 2 / 5 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | MMMMMMMMMMMMMMM 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 60.00% :::::::::::::::::::::::: | 3 / 5 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/7 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 7/7 [00:00<00:00, 126.03it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/7 [00:00<?, ?it/s]
14%|█▍ | 1/7 [00:00<00:01, 4.77it/s]
57%|█████▋ | 4/7 [00:00<00:00, 13.43it/s]
100%|██████████| 7/7 [00:00<00:00, 19.00it/s]
100%|██████████| 7/7 [00:00<00:00, 15.91it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/162/0.2/162_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/162/0.1/162_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/162/0.1/162_T3.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/162/0.2/162_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/162/0.1/162_T4.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/162/0.0/162_T5.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/162/0.0/162_T6.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/182.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/182
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/182.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/182
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:11, 1.59s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:07, 1.27s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:04<00:08, 1.70s/it]
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read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:06, 2.01s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:11<00:04, 2.20s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:14<00:02, 2.32s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 3.01s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 2.37s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/43 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/43 [00:00<00:10, 4.17it/s]
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slice data vertically and clustering: 9%|▉ | 4/43 [00:02<00:30, 1.29it/s]
slice data vertically and clustering: 12%|█▏ | 5/43 [00:03<00:36, 1.03it/s]
slice data vertically and clustering: 14%|█▍ | 6/43 [00:05<00:37, 1.01s/it]
slice data vertically and clustering: 16%|█▋ | 7/43 [00:05<00:32, 1.09it/s]
slice data vertically and clustering: 19%|█▊ | 8/43 [00:06<00:28, 1.24it/s]
slice data vertically and clustering: 21%|██ | 9/43 [00:06<00:23, 1.43it/s]
slice data vertically and clustering: 23%|██▎ | 10/43 [00:07<00:19, 1.70it/s]
slice data vertically and clustering: 26%|██▌ | 11/43 [00:07<00:15, 2.08it/s]
slice data vertically and clustering: 28%|██▊ | 12/43 [00:07<00:12, 2.54it/s]
slice data vertically and clustering: 30%|███ | 13/43 [00:07<00:09, 3.13it/s]
slice data vertically and clustering: 33%|███▎ | 14/43 [00:07<00:07, 3.93it/s]
slice data vertically and clustering: 37%|███▋ | 16/43 [00:07<00:04, 5.79it/s]
slice data vertically and clustering: 42%|████▏ | 18/43 [00:08<00:03, 8.03it/s]
slice data vertically and clustering: 49%|████▉ | 21/43 [00:08<00:01, 12.06it/s]
slice data vertically and clustering: 63%|██████▎ | 27/43 [00:08<00:00, 21.56it/s]
slice data vertically and clustering: 100%|██████████| 43/43 [00:08<00:00, 5.15it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 81 |
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+ 0.00% | 0 / 81 | MMMMMMMMMMMMMMM 1.23% | 1 / 81 |
+ 79.01% ::::::::::::::::::::::::::::::: | 64 / 81 |
+ 1.23% | 1 / 81 |
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+ 1.23% | 1 / 81 | MMMMMMMMMMMMMMM 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 86.42% :::::::::::::::::::::::::::::::::: | 70 / 81 |
+ 1.23% | 1 / 81 |
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+ 81.48% :::::::::::::::::::::::::::::::: | 66 / 81 |
+ 1.23% | 1 / 81 |
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+ 1.23% | 1 / 81 | MMMMMMMMMMMMMMM 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 81.48% :::::::::::::::::::::::::::::::: | 66 / 81 |
+ 1.23% | 1 / 81 |
+ 98.77% ::::::::::::::::::::::::::::::::::::::: | 80 / 81 |
+ 1.23% | 1 / 81 |
+ 95.06% :::::::::::::::::::::::::::::::::::::: | 77 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 87.65% ::::::::::::::::::::::::::::::::::: | 71 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 | MMMMMMMMMMMMMMM 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 81.48% :::::::::::::::::::::::::::::::: | 66 / 81 |
+ 1.23% | 1 / 81 |
+ 98.77% ::::::::::::::::::::::::::::::::::::::: | 80 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 87.65% ::::::::::::::::::::::::::::::::::: | 71 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 | MMMMMMMMMMMMMMM 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 81.48% :::::::::::::::::::::::::::::::: | 66 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 87.65% ::::::::::::::::::::::::::::::::::: | 71 / 81 |
+ 1.23% | 1 / 81 |
+ 95.06% :::::::::::::::::::::::::::::::::::::: | 77 / 81 | MMMMMMMMMMMMMMM 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 81.48% :::::::::::::::::::::::::::::::: | 66 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 87.65% ::::::::::::::::::::::::::::::::::: | 71 / 81 |
+ 1.23% | 1 / 81 |
+ 95.06% :::::::::::::::::::::::::::::::::::::: | 77 / 81 | MMMMMMMMMMMMMMM 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 81.48% :::::::::::::::::::::::::::::::: | 66 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 87.65% ::::::::::::::::::::::::::::::::::: | 71 / 81 |
+ 97.53% ::::::::::::::::::::::::::::::::::::::: | 79 / 81 |
+ 95.06% :::::::::::::::::::::::::::::::::::::: | 77 / 81 | MMMMMMMMMMMMMMM 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 81.48% :::::::::::::::::::::::::::::::: | 66 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 87.65% ::::::::::::::::::::::::::::::::::: | 71 / 81 |
+ 97.53% ::::::::::::::::::::::::::::::::::::::: | 79 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 | MMMMMMMMMMMMMMM 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 81.48% :::::::::::::::::::::::::::::::: | 66 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 97.53% ::::::::::::::::::::::::::::::::::::::: | 79 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 | MMMMMMMMMMMMMMM 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 97.53% ::::::::::::::::::::::::::::::::::::::: | 79 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 | MMMMMMMMMMMMMMM 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 | MMMMMMMMMMMMMMM 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 91.36% :::::::::::::::::::::::::::::::::::: | 74 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 | MMMMMMMMMMMMMMM 96.30% :::::::::::::::::::::::::::::::::::::: | 78 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 91.36% :::::::::::::::::::::::::::::::::::: | 74 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 91.36% :::::::::::::::::::::::::::::::::::: | 74 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 1.23% | 1 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 83.95% ::::::::::::::::::::::::::::::::: | 68 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 81 / 81 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 | MMMMMMMMMMMMMMM 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/1 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 1/1 [00:00<00:00, 115.49it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/1 [00:00<?, ?it/s]
100%|██████████| 1/1 [00:00<00:00, 2.05it/s]
100%|██████████| 1/1 [00:00<00:00, 2.05it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/182/0.0/182_T0.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/183.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/183
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/183.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/183
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:01<00:07, 1.07s/it]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:03<00:10, 1.67s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:05<00:10, 2.02s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:07<00:07, 1.96s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:09<00:05, 1.96s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:11<00:04, 2.08s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:15<00:02, 2.79s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 2.85s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:18<00:00, 2.37s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/43 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/43 [00:00<00:09, 4.58it/s]
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slice data vertically and clustering: 12%|█▏ | 5/43 [00:04<00:37, 1.01it/s]
slice data vertically and clustering: 14%|█▍ | 6/43 [00:05<00:37, 1.01s/it]
slice data vertically and clustering: 16%|█▋ | 7/43 [00:05<00:32, 1.11it/s]
slice data vertically and clustering: 19%|█▊ | 8/43 [00:06<00:27, 1.28it/s]
slice data vertically and clustering: 21%|██ | 9/43 [00:06<00:22, 1.51it/s]
slice data vertically and clustering: 23%|██▎ | 10/43 [00:06<00:17, 1.85it/s]
slice data vertically and clustering: 26%|██▌ | 11/43 [00:07<00:14, 2.25it/s]
slice data vertically and clustering: 28%|██▊ | 12/43 [00:07<00:11, 2.76it/s]
slice data vertically and clustering: 30%|███ | 13/43 [00:07<00:08, 3.41it/s]
slice data vertically and clustering: 35%|███▍ | 15/43 [00:07<00:05, 5.10it/s]
slice data vertically and clustering: 40%|███▉ | 17/43 [00:07<00:03, 7.16it/s]
slice data vertically and clustering: 47%|████▋ | 20/43 [00:07<00:02, 10.97it/s]
slice data vertically and clustering: 60%|██████ | 26/43 [00:07<00:00, 20.15it/s]
slice data vertically and clustering: 100%|██████████| 43/43 [00:08<00:00, 5.35it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 74 |
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+ 0.00% | 0 / 73 | MMMMMMMMMMMMMMM 1.35% | 1 / 74 |
+ 90.54% :::::::::::::::::::::::::::::::::::: | 67 / 74 |
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+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 | MMMMMMMMMMMMMMM 1.35% | 1 / 74 |
+ 90.54% :::::::::::::::::::::::::::::::::::: | 67 / 74 |
+ 1.35% | 1 / 74 |
+ 1.37% | 1 / 73 |
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+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 | MMMMMMMMMMMMMMM 93.24% ::::::::::::::::::::::::::::::::::::: | 69 / 74 |
+ 90.54% :::::::::::::::::::::::::::::::::::: | 67 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 93.15% ::::::::::::::::::::::::::::::::::::: | 68 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 | MMMMMMMMMMMMMMM 93.24% ::::::::::::::::::::::::::::::::::::: | 69 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 93.15% ::::::::::::::::::::::::::::::::::::: | 68 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 98.63% ::::::::::::::::::::::::::::::::::::::: | 72 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 | MMMMMMMMMMMMMMM 93.24% ::::::::::::::::::::::::::::::::::::: | 69 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 93.15% ::::::::::::::::::::::::::::::::::::: | 68 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 98.63% ::::::::::::::::::::::::::::::::::::::: | 72 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 93.15% ::::::::::::::::::::::::::::::::::::: | 68 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | MMMMMMMMMMMMMMM 93.24% ::::::::::::::::::::::::::::::::::::: | 69 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 93.15% ::::::::::::::::::::::::::::::::::::: | 68 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 98.63% ::::::::::::::::::::::::::::::::::::::: | 72 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 93.15% ::::::::::::::::::::::::::::::::::::: | 68 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | MMMMMMMMMMMMMMM 93.24% ::::::::::::::::::::::::::::::::::::: | 69 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 98.63% ::::::::::::::::::::::::::::::::::::::: | 72 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 93.15% ::::::::::::::::::::::::::::::::::::: | 68 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | MMMMMMMMMMMMMMM 93.24% ::::::::::::::::::::::::::::::::::::: | 69 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.37% | 1 / 73 |
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+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 93.15% ::::::::::::::::::::::::::::::::::::: | 68 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | MMMMMMMMMMMMMMM 93.24% ::::::::::::::::::::::::::::::::::::: | 69 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
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+ 1.37% | 1 / 73 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 93.15% ::::::::::::::::::::::::::::::::::::: | 68 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | MMMMMMMMMMMMMMM 93.24% ::::::::::::::::::::::::::::::::::::: | 69 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
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+ 1.37% | 1 / 73 |
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+ 93.15% ::::::::::::::::::::::::::::::::::::: | 68 / 73 |
+ 1.37% | 1 / 73 |
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+ 1.37% | 1 / 73 |
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+ 93.15% ::::::::::::::::::::::::::::::::::::: | 68 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 93.15% ::::::::::::::::::::::::::::::::::::: | 68 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 1.37% | 1 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 74 / 74 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 73 / 73 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 4 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 25.00% :::::::::: | 1 / 4 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 50.00% :::::::::::::::::::: | 2 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 75.00% :::::::::::::::::::::::::::::: | 3 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 4 / 4 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/4 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 4/4 [00:00<00:00, 111.18it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/4 [00:00<?, ?it/s]
25%|██▌ | 1/4 [00:00<00:00, 3.57it/s]
50%|█████ | 2/4 [00:00<00:00, 5.05it/s]
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100%|██████████| 4/4 [00:00<00:00, 6.41it/s]
100%|██████████| 4/4 [00:00<00:00, 5.77it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/183/0.3/183_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/183/0.0/183_T2.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/183/0.0/183_T1.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/183/0.0/183_T3.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/188.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/188
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/188.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/188
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:03, 1.93it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:01<00:03, 1.60it/s]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:03<00:05, 1.19s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:05<00:06, 1.63s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:06<00:04, 1.60s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:09<00:03, 1.81s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:11<00:01, 1.87s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:13<00:00, 2.03s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:13<00:00, 1.69s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/41 [00:00<?, ?it/s]
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slice data vertically and clustering: 17%|█▋ | 7/41 [00:02<00:11, 3.01it/s]
slice data vertically and clustering: 20%|█▉ | 8/41 [00:02<00:09, 3.50it/s]
slice data vertically and clustering: 22%|██▏ | 9/41 [00:02<00:07, 4.17it/s]
slice data vertically and clustering: 27%|██▋ | 11/41 [00:02<00:04, 6.06it/s]
slice data vertically and clustering: 34%|███▍ | 14/41 [00:02<00:02, 9.52it/s]
slice data vertically and clustering: 49%|████▉ | 20/41 [00:02<00:01, 18.63it/s]
slice data vertically and clustering: 100%|██████████| 41/41 [00:03<00:00, 13.46it/s]fitting convex hulls to clusters
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 51 / 51 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 51 / 51 | identifying stems...
+fitting cylinders to possible stems...
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+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/1 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 1/1 [00:00<00:00, 71.73it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/1 [00:00<?, ?it/s]
100%|██████████| 1/1 [00:00<00:00, 2.89it/s]
100%|██████████| 1/1 [00:00<00:00, 2.89it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/188/0.3/188_T0.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/202.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/202
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/202.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/202
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:05, 1.39it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:07, 1.31s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:03<00:06, 1.23s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:05<00:06, 1.66s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:07<00:04, 1.62s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:09<00:03, 1.84s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:11<00:01, 1.98s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:15<00:00, 2.36s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:15<00:00, 1.89s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/41 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/41 [00:00<00:04, 9.10it/s]
slice data vertically and clustering: 5%|▍ | 2/41 [00:00<00:07, 4.88it/s]
slice data vertically and clustering: 7%|▋ | 3/41 [00:00<00:13, 2.75it/s]
slice data vertically and clustering: 10%|▉ | 4/41 [00:01<00:18, 2.01it/s]
slice data vertically and clustering: 12%|█▏ | 5/41 [00:02<00:21, 1.68it/s]
slice data vertically and clustering: 15%|█▍ | 6/41 [00:03<00:20, 1.67it/s]
slice data vertically and clustering: 17%|█▋ | 7/41 [00:03<00:18, 1.82it/s]
slice data vertically and clustering: 20%|█▉ | 8/41 [00:03<00:15, 2.14it/s]
slice data vertically and clustering: 22%|██▏ | 9/41 [00:03<00:12, 2.57it/s]
slice data vertically and clustering: 24%|██▍ | 10/41 [00:04<00:10, 3.09it/s]
slice data vertically and clustering: 27%|██▋ | 11/41 [00:04<00:07, 3.76it/s]
slice data vertically and clustering: 32%|███▏ | 13/41 [00:04<00:05, 5.53it/s]
slice data vertically and clustering: 37%|███▋ | 15/41 [00:04<00:03, 7.78it/s]
slice data vertically and clustering: 49%|████▉ | 20/41 [00:04<00:01, 15.18it/s]
slice data vertically and clustering: 80%|████████ | 33/41 [00:04<00:00, 38.48it/s]
slice data vertically and clustering: 100%|██████████| 41/41 [00:04<00:00, 8.60it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 60 |
+ 0.00% | 0 / 60 |
+ 0.00% | 0 / 60 |
+ 0.00% | 0 / 60 |
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+ 0.00% | 0 / 59 |
+ 0.00% | 0 / 59 |
+ 0.00% | 0 / 59 |
+MMMMMMMMMMMMMMM 1.67% | 1 / 60 |
+ 0.00% | 0 / 60 |
+ 0.00% | 0 / 60 |
+ 0.00% | 0 / 60 |
+ 0.00% | 0 / 60 |
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+ 0.00% | 0 / 59 |
+ 0.00% | 0 / 59 |
+ 0.00% | 0 / 59 |
+ 0.00% | 0 / 59 |
+ 0.00% | 0 / 59 |
+ 0.00% | 0 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 51 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 51 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 51 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 51 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 51 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 51 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 85.00% :::::::::::::::::::::::::::::::::: | 51 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 96.67% :::::::::::::::::::::::::::::::::::::: | 58 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 96.67% :::::::::::::::::::::::::::::::::::::: | 58 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/2 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 2/2 [00:00<00:00, 105.05it/s]
+adding leaves to stems, this may take a while...
+
0%| | 0/2 [00:00<?, ?it/s]
50%|█████ | 1/2 [00:00<00:00, 6.24it/s]
100%|██████████| 2/2 [00:00<00:00, 7.49it/s]
100%|██████████| 2/2 [00:00<00:00, 7.26it/s]
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/202/0.2/202_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/202/0.2/202_T1.leafon.ply
+Processing sample_playground/segmented_point_clouds/tiled/second.segmented/210.ply
+Output folder: sample_playground/instance_segmented_point_clouds/second.segmented/210
+INFO: Pandarallel will run on 16 workers.
+INFO: Pandarallel will use Memory file system to transfer data between the main process and workers.
+---- parameters ----
+tile sample_playground/segmented_point_clouds/tiled/second.segmented/210.ply
+odir sample_playground/instance_segmented_point_clouds/second.segmented/210
+tindex sample_playground/segmented_point_clouds/tiled/second.segmented/tile_index.dat
+n_tiles 3
+overlap False
+slice_thickness 0.5
+find_stems_height 1.5
+find_stems_thickness 0.5
+find_stems_min_radius 0.025
+find_stems_min_points 50
+graph_edge_length 1
+graph_maximum_cumulative_gap 3.0
+min_points_per_tree 0
+add_leaves True
+add_leaves_voxel_length 0.5
+add_leaves_edge_length 1
+save_diameter_class True
+ignore_missing_tiles True
+pandarallel True
+verbose True
+
read in neighbouring tiles: 0%| | 0/8 [00:00<?, ?it/s]
read in neighbouring tiles: 12%|█▎ | 1/8 [00:00<00:05, 1.37it/s]
read in neighbouring tiles: 25%|██▌ | 2/8 [00:02<00:07, 1.32s/it]
read in neighbouring tiles: 38%|███▊ | 3/8 [00:03<00:06, 1.22s/it]
read in neighbouring tiles: 50%|█████ | 4/8 [00:05<00:06, 1.66s/it]
read in neighbouring tiles: 62%|██████▎ | 5/8 [00:08<00:05, 1.82s/it]
read in neighbouring tiles: 75%|███████▌ | 6/8 [00:09<00:03, 1.82s/it]
read in neighbouring tiles: 88%|████████▊ | 7/8 [00:12<00:02, 2.21s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:15<00:00, 2.36s/it]
read in neighbouring tiles: 100%|██████████| 8/8 [00:15<00:00, 1.94s/it]
+
+----- skeletonisation started -----
+
slice data vertically and clustering: 0%| | 0/41 [00:00<?, ?it/s]
slice data vertically and clustering: 2%|▏ | 1/41 [00:00<00:04, 9.78it/s]
slice data vertically and clustering: 5%|▍ | 2/41 [00:00<00:07, 5.04it/s]
slice data vertically and clustering: 7%|▋ | 3/41 [00:00<00:13, 2.82it/s]
slice data vertically and clustering: 10%|▉ | 4/41 [00:01<00:18, 2.03it/s]
slice data vertically and clustering: 12%|█▏ | 5/41 [00:02<00:21, 1.69it/s]
slice data vertically and clustering: 15%|█▍ | 6/41 [00:02<00:20, 1.69it/s]
slice data vertically and clustering: 17%|█▋ | 7/41 [00:03<00:18, 1.84it/s]
slice data vertically and clustering: 20%|█▉ | 8/41 [00:03<00:15, 2.17it/s]
slice data vertically and clustering: 22%|██▏ | 9/41 [00:03<00:12, 2.60it/s]
slice data vertically and clustering: 24%|██▍ | 10/41 [00:04<00:09, 3.15it/s]
slice data vertically and clustering: 27%|██▋ | 11/41 [00:04<00:07, 3.82it/s]
slice data vertically and clustering: 32%|███▏ | 13/41 [00:04<00:04, 5.64it/s]
slice data vertically and clustering: 39%|███▉ | 16/41 [00:04<00:02, 9.08it/s]
slice data vertically and clustering: 56%|█████▌ | 23/41 [00:04<00:00, 19.78it/s]
slice data vertically and clustering: 100%|██████████| 41/41 [00:04<00:00, 8.74it/s]fitting convex hulls to clusters
+ 0.00% | 0 / 60 |
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+ 0.00% | 0 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
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+ 0.00% | 0 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
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+ 0.00% | 0 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
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+ 1.69% | 1 / 59 |
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+ 1.69% | 1 / 59 |
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+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
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+ 1.69% | 1 / 59 |
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+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
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+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
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+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 48.33% ::::::::::::::::::: | 29 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
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+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 48.33% ::::::::::::::::::: | 29 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
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+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 48.33% ::::::::::::::::::: | 29 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
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+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
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+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 48.33% ::::::::::::::::::: | 29 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
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+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
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+ 1.69% | 1 / 59 |
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+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
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+ 1.69% | 1 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
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+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 1.69% | 1 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 1.67% | 1 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 60 / 60 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 59 / 59 | identifying stems...
+fitting cylinders to possible stems...
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 |
+ 0.00% | 0 / 3 | MMMMMMMMMMMMMMM 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 |
+ 33.33% ::::::::::::: | 1 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 66.67% :::::::::::::::::::::::::: | 2 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | MMMMMMMMMMMMMMM 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 |
+ 100.00% :::::::::::::::::::::::::::::::::::::::: | 3 / 3 | generating graph, this may take a while...
+merging skeleton points with graph
+
writing stems to file: 0%| | 0/2 [00:00<?, ?it/s]
writing stems to file: 100%|██████████| 2/2 [00:00<00:00, 81.45it/s]
+adding leaves to stems, this may take a while...
+
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+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/210/0.5/210_T0.leafon.ply
+leaf on saved to: sample_playground/instance_segmented_point_clouds/second.segmented/210/0.4/210_T1.leafon.ply
+INFO:root:Removing all the files in the folder and subfolders which contain the word 'leafoff'
+INFO:root:Labeling the ply files
+Labeling instances in ply files and merging them afterwards
+
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+INFO:root:The file is saved in: sample_playground/instance_segmented_point_clouds/first.segmented/sample_playground/instance_segmented_point_clouds/first.segmented/output_instance_segmented.ply
+INFO:root:Merging was done for 265 number of files
+INFO:root:Done
+INFO:root:Removing all the files in the folder and subfolders which contain the word 'leafoff'
+INFO:root:Labeling the ply files
+Labeling instances in ply files and merging them afterwards
+
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+INFO:root:The file is saved in: sample_playground/instance_segmented_point_clouds/second.segmented/sample_playground/instance_segmented_point_clouds/second.segmented/output_instance_segmented.ply
+INFO:root:Merging was done for 254 number of files
+INFO:root:Done
+Done
+Results are in sample_playground/results
--
GitLab