From f04ce4d8de5ae6b326be3e8a8e3765cd03d21eb6 Mon Sep 17 00:00:00 2001
From: Maciej Wielgosz <maciej.wielgosz@nibio.no>
Date: Tue, 24 Jan 2023 09:10:00 +0100
Subject: [PATCH] run wrapper for oracle
---
run_oracle_wrapper.py | 71 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 71 insertions(+)
create mode 100644 run_oracle_wrapper.py
diff --git a/run_oracle_wrapper.py b/run_oracle_wrapper.py
new file mode 100644
index 0000000..5f7f1b4
--- /dev/null
+++ b/run_oracle_wrapper.py
@@ -0,0 +1,71 @@
+# This is the the file to be run on the oracle cloud
+
+import oci
+import argparse
+import os
+import io
+import sys
+import json
+import shutil
+import yaml
+from pathlib import Path
+from oci.config import validate_config
+from oci.object_storage import ObjectStorageClient
+
+
+def run_oracle_wrapper(path_to_config_file):
+ # read the config file with the credentials with json format
+ with open('login_oracle_config.json') as f:
+ config = json.load(f)
+
+ # validate the config file
+ validate_config(config)
+
+ # create the client
+ client = ObjectStorageClient(config)
+
+ # get the namespace
+ namespace = client.get_namespace().data
+
+ # get the bucket name
+ bucket_name = 'bucket_lidar_data'
+
+ # get the object name
+ object_name = './geoslam/plot72_tile_-25_-25.las'
+
+ # get the object
+ file = client.get_object(namespace, bucket_name, object_name)
+
+ # write the object to a file
+ with open('plot_from_bucket.las', 'wb') as f:
+ for chunk in file.data.raw.stream(1024 * 1024, decode_content=False):
+ f.write(chunk)
+
+
+ # read the config file from config folder
+ with open(path_to_config_file) as f:
+ config_flow_params = yaml.load(f, Loader=yaml.FullLoader)
+
+ # create the input folder if it does not exist
+ if not os.path.exists(config_flow_params['general']['input_folder']):
+ os.mkdir(config_flow_params['general']['input_folder'])
+
+ # move the file to the input folder using shutil if it does not exist
+ if not os.path.exists(config_flow_params['general']['input_folder'] + '/plot_from_bucket.las'):
+ shutil.move('plot_from_bucket.las', config_flow_params['general']['input_folder'])
+
+
+ from run import main
+
+ # run the main function
+ main(path_to_config_file)
+
+if __name__ == '__main__':
+ # use argparse to get the path to the config file
+ parser = argparse.ArgumentParser()
+ parser.add_argument("--path_to_config_file", type=str, default="./config/config.yaml")
+ args = parser.parse_args()
+
+ # run the main function
+ run_oracle_wrapper(args.path_to_config_file)
+
--
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