From ee5a8e4048f079964d75a20335e241b09912abb8 Mon Sep 17 00:00:00 2001
From: Maciej Wielgosz <maciej.wielgosz@nibio.no>
Date: Wed, 18 Jan 2023 10:04:12 +0100
Subject: [PATCH] update in the seans pipeline to account for relative paths
---
sean_sem_seg/run_single_file.py | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/sean_sem_seg/run_single_file.py b/sean_sem_seg/run_single_file.py
index 9db78d0..7961f1a 100644
--- a/sean_sem_seg/run_single_file.py
+++ b/sean_sem_seg/run_single_file.py
@@ -98,7 +98,10 @@ if __name__ == "__main__":
# copy the output "segmented_cleaned.las" to the output directory
- results_dir_name = args.point_cloud.split('.')[0] + '_FSCT_output'
+ # results_dir_name = args.point_cloud.split('.')[0] + '_FSCT_output'
+ dir_core_name = os.path.dirname(args.point_cloud)
+ file_name = os.path.basename(args.point_cloud).split('.')[0]
+ results_dir_name = os.path.join(dir_core_name, file_name + '_FSCT_output')
print("Copying results to output directory.")
shutil.copy(os.path.join(results_dir_name, "segmented_cleaned.las"), args.odir)
--
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