From a769d5ab4e299a3ec69de8311c17afa8b9b58107 Mon Sep 17 00:00:00 2001
From: Maciej Wielgosz <maciej.wielgosz@nibio.no>
Date: Tue, 27 Jun 2023 11:50:02 +0200
Subject: [PATCH] updated oracle wrapper local
---
check_list.info | 2 +-
run_oracle_wrapper_local.py | 26 ++++++++++++++++----------
2 files changed, 17 insertions(+), 11 deletions(-)
diff --git a/check_list.info b/check_list.info
index c4d464f..a2df05e 100644
--- a/check_list.info
+++ b/check_list.info
@@ -1,4 +1,4 @@
Dockerfile - set correct oracle wrapper
build.sh
-run_oracle_wrapper.py or run_oracle_wrapper_local.py -> set paths
+run_oracle_wrapper.py or run_oracle_wrapper_local.py -> pick a right mode (DEBUG or not)
config.yaml -> pick segmentation or instance segmentation
\ No newline at end of file
diff --git a/run_oracle_wrapper_local.py b/run_oracle_wrapper_local.py
index 180160c..68180e7 100644
--- a/run_oracle_wrapper_local.py
+++ b/run_oracle_wrapper_local.py
@@ -1,14 +1,16 @@
-# This is the the file to be run on the oracle cloud
+# Author: Maciej Wielgosz
+# THis the oracle wrapper for the Oracle Cloud Infrastructure (OCI) environment and Docker container
-import oci
import argparse
import os
-import io
import shutil
+
import yaml
from run import main
+DEBUG_MODE = False
+
def run_oracle_wrapper(path_to_config_file):
# read the config file from config folder
@@ -16,15 +18,19 @@ def run_oracle_wrapper(path_to_config_file):
config_flow_params = yaml.load(f, Loader=yaml.FullLoader)
# read system environment variables
- # input_location = os.environ['OBJ_INPUT_LOCATION']
- # output_location = os.environ['OBJ_OUTPUT_LOCATION']
- # remap the input and output locations
- # input_location = input_location.replace("@axqlz2potslu", "").replace("oci://", "/mnt/")
- # output_location = output_location.replace("@axqlz2potslu", "").replace("oci://", "/mnt/")
+ if DEBUG_MODE:
+ input_location = "local_folder_in/las_files/"
+ output_location = "local_folder_out/las_files/"
+ else:
+ # get the input and output locations from the environment variables
+ input_location = os.environ['OBJ_INPUT_LOCATION']
+ output_location = os.environ['OBJ_OUTPUT_LOCATION']
+
+ # remap the input and output locations
+ input_location = input_location.replace("@axqlz2potslu", "").replace("oci://", "/mnt/")
+ output_location = output_location.replace("@axqlz2potslu", "").replace("oci://", "/mnt/")
- input_location = "local_folder_in/las_files/"
- output_location = "local_folder_out/las_files/"
# copy files from input_location to the input folder
shutil.copytree(input_location, config_flow_params['general']['input_folder'])
--
GitLab