From 4267414eb31edc97b40060f7b87841d77d0bbab0 Mon Sep 17 00:00:00 2001
From: Maciej Wielgosz <maciej.wielgosz@nibio.no>
Date: Sat, 21 Jan 2023 16:25:04 +0000
Subject: [PATCH] Dockerfile for oracle deploy
---
Dockerfile | 75 ++++++++++++++++++++++++++++++++++++++++++++++++++++++
1 file changed, 75 insertions(+)
create mode 100644 Dockerfile
diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 0000000..430fe40
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,75 @@
+FROM nvidia/cuda:11.2.1-cudnn8-runtime-ubuntu20.04
+
+RUN ln -fs /usr/share/zoneinfo/Europe/Warsaw /etc/localtime
+RUN apt-get update && apt-get install -y --no-install-recommends \
+ git \
+ language-pack-en-base \
+ openssh-server \
+ openssh-client \
+ python3.6 \
+ python3-pip \
+ python3-setuptools \
+ ssh \
+ curl \
+ sudo \
+ vim \
+ wget \
+ less \
+ libglib2.0-0 \
+ libsm6 \
+ libxext6 \
+ libxrender-dev \
+ libsndfile1 \
+ && rm -rf /var/lib/apt/lists/* \
+ && python3 -m pip install --no-cache-dir --upgrade \
+ autopep8 \
+ doc8 \
+ docutils \
+ ipython \
+ pip \
+ pylint \
+ pytest \
+ rope \
+ setuptools \
+ wheel \
+ torch \
+ tqdm \
+ pandas
+
+# Create non-root user
+ARG UID=1000
+ARG GID=1000
+ARG USERNAME=nibio
+ENV HOME /home/${USERNAME}
+
+RUN groupadd -g ${GID} ${USERNAME} \
+ && useradd -ms /bin/bash -u ${UID} -g ${GID} -G sudo ${USERNAME} \
+ && echo "${USERNAME}:${USERNAME}" | chpasswd
+
+COPY ./check_print.py $HOME
+
+#USER $USERNAME
+WORKDIR $HOME
+
+# install conda
+ARG UBUNTU_VER=20.04
+ARG CONDA_VER=latest
+ARG OS_TYPE=x86_64
+
+RUN mkdir conda_installation && cd conda_installation
+RUN curl -LO "http://repo.continuum.io/miniconda/Miniconda3-${CONDA_VER}-Linux-${OS_TYPE}.sh"
+RUN bash Miniconda3-latest-Linux-x86_64.sh -p /miniconda -b
+RUN /miniconda/bin/conda update conda
+
+RUN /miniconda/bin/conda init bash
+RUN /miniconda/bin/conda create --name pdal-env python=3.8.13
+
+SHELL ["/miniconda/bin/conda", "run", "-n", "pdal-env", "/bin/bash", "-c"]
+
+RUN echo "conda activate pdal-env" >> ~/.bashrc
+
+RUN conda install -c conda-forge pdal python-pdal
+
+#CMD ["echo", "'just test print bash'" ]
+
+CMD ["python3", "check_print.py" ]
--
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