diff --git a/pom.xml b/pom.xml index f5d987b2779347151b2b7a51ea8794b45516d05d..36ed0435a4b0e2699460490a6380d19cb61975b7 100755 --- a/pom.xml +++ b/pom.xml @@ -9,15 +9,19 @@ <properties> <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding> <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding> - <geotools.version>13.4</geotools.version> + <geotools.version>20.2</geotools.version> </properties> <name>VIPSLogic</name> <url>http://maven.apache.org</url> <repositories> - <repository> + <!--repository> <id>jitpack.io</id> <url>https://jitpack.io</url> + </repository--> + <repository> + <id>mvnrepository.com</id> + <url>https://mvnrepository.com</url> </repository> <repository> <id>bedatadriven</id> @@ -49,15 +53,15 @@ <version>4.2.0</version> </dependency> <dependency> - <groupId>com.github.bjornharrtell</groupId> - <!--groupId>org.wololo</groupId--> + <!--groupId>com.github.bjornharrtell</groupId--> + <groupId>org.wololo</groupId> <artifactId>jts2geojson</artifactId> - <version>0.10.0</version> + <version>0.12.0</version> </dependency> <dependency> <groupId>org.hibernate</groupId> <artifactId>hibernate-spatial</artifactId> - <version>5.3.9.Final</version> + <version>5.4.2.Final</version> <exclusions> <exclusion> <artifactId>postgresql</artifactId> @@ -168,8 +172,7 @@ <dependency> <groupId>org.hibernate</groupId> <artifactId>hibernate-core</artifactId> - <version>5.3.9.Final</version> - <scope>provided</scope> + <version>5.4.2.Final</version> </dependency> <dependency> <groupId>org.postgresql</groupId> @@ -183,6 +186,12 @@ <version>2.9.8</version> <type>jar</type> </dependency> + <dependency> + <groupId>org.locationtech.jts</groupId> + <artifactId>jts-core</artifactId> + <version>1.16.0</version> + <type>jar</type> + </dependency> <dependency> <groupId>javax</groupId> <artifactId>javaee-web-api</artifactId> @@ -251,12 +260,12 @@ <dependency> <groupId>org.geotools</groupId> <artifactId>gt-api</artifactId> - <version>17.2</version> + <version>20.3</version> </dependency> <dependency> <groupId>org.geotools</groupId> <artifactId>gt-epsg-hsql</artifactId> - <version>17.2</version> + <version>20.3</version> </dependency> <dependency> <groupId>com.webcohesion.enunciate</groupId> diff --git a/src/main/java/no/nibio/vips/logic/controller/servlet/OrganizationController.java b/src/main/java/no/nibio/vips/logic/controller/servlet/OrganizationController.java index 67a068d77657ddf6b1b562ea9056eda6f962e60c..68f30fcbefa199f806de82884ecc2dadf561afaa 100644 --- a/src/main/java/no/nibio/vips/logic/controller/servlet/OrganizationController.java +++ b/src/main/java/no/nibio/vips/logic/controller/servlet/OrganizationController.java @@ -20,11 +20,8 @@ package no.nibio.vips.logic.controller.servlet; import java.io.IOException; -import java.io.PrintWriter; -import java.util.Arrays; import java.util.Collections; import java.util.List; -import java.util.Locale; import java.util.TimeZone; import javax.servlet.ServletException; import javax.servlet.http.HttpServlet; diff --git a/src/main/java/no/nibio/vips/logic/controller/servlet/PointOfInterestController.java b/src/main/java/no/nibio/vips/logic/controller/servlet/PointOfInterestController.java index 20676a24358b948d44aa14ceb81f4b6061ee98c6..b3fb1d1b33bc6cf3ebc6aa3f24bea3864bd87197 100755 --- a/src/main/java/no/nibio/vips/logic/controller/servlet/PointOfInterestController.java +++ b/src/main/java/no/nibio/vips/logic/controller/servlet/PointOfInterestController.java @@ -19,9 +19,9 @@ package no.nibio.vips.logic.controller.servlet; -import com.vividsolutions.jts.geom.Coordinate; -import com.vividsolutions.jts.geom.GeometryFactory; -import com.vividsolutions.jts.geom.Point; +import org.locationtech.jts.geom.Coordinate; +import org.locationtech.jts.geom.GeometryFactory; +import org.locationtech.jts.geom.Point; import java.io.IOException; import java.net.URISyntaxException; import java.util.Collections; diff --git a/src/main/java/no/nibio/vips/logic/controller/session/ForecastBean.java b/src/main/java/no/nibio/vips/logic/controller/session/ForecastBean.java index 0b16c62705c583f6ec075420a32f8ee154fa3fb6..b23cbba09fd738c973e9d6d39bfa07e39c2fa37b 100755 --- a/src/main/java/no/nibio/vips/logic/controller/session/ForecastBean.java +++ b/src/main/java/no/nibio/vips/logic/controller/session/ForecastBean.java @@ -20,7 +20,6 @@ package no.nibio.vips.logic.controller.session; import com.fasterxml.jackson.databind.JsonNode; -import com.google.common.base.Functions; import java.util.Calendar; import java.util.TimeZone; import de.micromata.opengis.kml.v_2_2_0.Coordinate; @@ -51,7 +50,6 @@ import javax.persistence.EntityManager; import javax.persistence.NoResultException; import javax.persistence.PersistenceContext; import javax.persistence.Query; -import javax.ws.rs.ProcessingException; import javax.ws.rs.client.Client; import javax.ws.rs.client.ClientBuilder; import javax.ws.rs.client.WebTarget; diff --git a/src/main/java/no/nibio/vips/logic/entity/ForecastResult.java b/src/main/java/no/nibio/vips/logic/entity/ForecastResult.java index 4d4d1f2a269835f7a293dc96ccdb1478861ba883..f345707d5d904e7c507ef92579bb14b61b422780 100755 --- a/src/main/java/no/nibio/vips/logic/entity/ForecastResult.java +++ b/src/main/java/no/nibio/vips/logic/entity/ForecastResult.java @@ -45,7 +45,7 @@ import com.fasterxml.jackson.annotation.JsonIgnore; import com.fasterxml.jackson.annotation.JsonProperty; import com.fasterxml.jackson.core.type.TypeReference; import com.fasterxml.jackson.databind.ObjectMapper; -import com.vividsolutions.jts.geom.Geometry; +import org.locationtech.jts.geom.Geometry; /** diff --git a/src/main/java/no/nibio/vips/logic/entity/Gis.java b/src/main/java/no/nibio/vips/logic/entity/Gis.java index b0fef7e6ef89b658adfa0b15517f91bc5f1e4e14..7ee47bb64d87b1f1184284d87a8c1846d6a6dba5 100755 --- a/src/main/java/no/nibio/vips/logic/entity/Gis.java +++ b/src/main/java/no/nibio/vips/logic/entity/Gis.java @@ -20,8 +20,8 @@ package no.nibio.vips.logic.entity; import com.fasterxml.jackson.annotation.JsonIgnore; -import com.vividsolutions.jts.geom.Coordinate; -import com.vividsolutions.jts.geom.Geometry; +import org.locationtech.jts.geom.Coordinate; +import org.locationtech.jts.geom.Geometry; import java.io.Serializable; import javax.persistence.Basic; import javax.persistence.Column; diff --git a/src/main/java/no/nibio/vips/logic/entity/Organization.java b/src/main/java/no/nibio/vips/logic/entity/Organization.java index a02f5f55c5ddd011e90ca43606cb85550ea7657e..aaa394b877711f52016cdf6224a690c352989fb0 100755 --- a/src/main/java/no/nibio/vips/logic/entity/Organization.java +++ b/src/main/java/no/nibio/vips/logic/entity/Organization.java @@ -19,7 +19,7 @@ package no.nibio.vips.logic.entity; -import com.vividsolutions.jts.geom.Point; +import org.locationtech.jts.geom.Point; import java.io.Serializable; import java.util.Set; import javax.persistence.Basic; @@ -40,6 +40,7 @@ import javax.xml.bind.annotation.XmlTransient; import com.fasterxml.jackson.annotation.JsonIgnore; import javax.persistence.FetchType; import javax.persistence.OneToOne; +import org.hibernate.annotations.Type; /** * @copyright 2019 <a href="http://www.nibio.no/">NIBIO</a> diff --git a/src/main/java/no/nibio/vips/logic/entity/PointOfInterest.java b/src/main/java/no/nibio/vips/logic/entity/PointOfInterest.java index d047e6dafa7fdb065c2f53ef706da9c5f16f54f3..f8325ed7b538bac528c7bb2ba202491292fc47f7 100755 --- a/src/main/java/no/nibio/vips/logic/entity/PointOfInterest.java +++ b/src/main/java/no/nibio/vips/logic/entity/PointOfInterest.java @@ -39,7 +39,7 @@ import javax.persistence.Transient; import javax.validation.constraints.Size; import javax.xml.bind.annotation.XmlRootElement; import com.fasterxml.jackson.annotation.JsonIgnore; -import com.vividsolutions.jts.geom.Geometry; +import org.locationtech.jts.geom.Geometry; import java.util.Set; import javax.persistence.CascadeType; import javax.persistence.DiscriminatorType; diff --git a/src/main/java/no/nibio/vips/logic/gis/GeometryEntity.java b/src/main/java/no/nibio/vips/logic/gis/GeometryEntity.java index 81fc2d344275a100080660c09915f3539d203e37..6589880e44b7d844b7c754589c8c47ddd2479756 100755 --- a/src/main/java/no/nibio/vips/logic/gis/GeometryEntity.java +++ b/src/main/java/no/nibio/vips/logic/gis/GeometryEntity.java @@ -19,7 +19,7 @@ package no.nibio.vips.logic.gis; -import com.vividsolutions.jts.geom.Geometry; +import org.locationtech.jts.geom.Geometry; import java.io.Serializable; import javax.persistence.Column; import javax.persistence.Entity; diff --git a/src/main/java/no/nibio/vips/logic/modules/applefruitmoth/ObservationSite.java b/src/main/java/no/nibio/vips/logic/modules/applefruitmoth/ObservationSite.java index bf96fa03642907de80bd4e7c0b8caef084f8b059..3e425dcd7dd80a0846758d94cdec9e4e244f7b94 100755 --- a/src/main/java/no/nibio/vips/logic/modules/applefruitmoth/ObservationSite.java +++ b/src/main/java/no/nibio/vips/logic/modules/applefruitmoth/ObservationSite.java @@ -19,7 +19,7 @@ package no.nibio.vips.logic.modules.applefruitmoth; -import com.vividsolutions.jts.geom.Geometry; +import org.locationtech.jts.geom.Geometry; import java.io.Serializable; import java.util.Date; import java.util.HashSet; diff --git a/src/main/java/no/nibio/vips/logic/scheduling/model/grid/preprocessor/ZymoseptoriaSimpleRiskGridModelPreprocessor.java b/src/main/java/no/nibio/vips/logic/scheduling/model/grid/preprocessor/ZymoseptoriaSimpleRiskGridModelPreprocessor.java index e22771e2ca96419ce0a7e9a87ec61d9d623a92b0..215afe76a8723cec5371612d9524323dced4a5d8 100644 --- a/src/main/java/no/nibio/vips/logic/scheduling/model/grid/preprocessor/ZymoseptoriaSimpleRiskGridModelPreprocessor.java +++ b/src/main/java/no/nibio/vips/logic/scheduling/model/grid/preprocessor/ZymoseptoriaSimpleRiskGridModelPreprocessor.java @@ -19,7 +19,7 @@ package no.nibio.vips.logic.scheduling.model.grid.preprocessor; -import com.vividsolutions.jts.geom.Coordinate; +import org.locationtech.jts.geom.Coordinate; import java.time.ZoneId; import java.time.ZonedDateTime; import java.time.temporal.ChronoUnit; diff --git a/src/main/java/no/nibio/vips/logic/service/ModelFormService.java b/src/main/java/no/nibio/vips/logic/service/ModelFormService.java index 30f5099d740d8fa0cb870d40c77dbf0717cb9694..04b997c65113b79fbf652011cef02f47f73f90a0 100644 --- a/src/main/java/no/nibio/vips/logic/service/ModelFormService.java +++ b/src/main/java/no/nibio/vips/logic/service/ModelFormService.java @@ -19,15 +19,13 @@ package no.nibio.vips.logic.service; -import com.vividsolutions.jts.geom.Coordinate; +import org.locationtech.jts.geom.Coordinate; import com.webcohesion.enunciate.metadata.Facet; import java.util.Date; import java.util.HashSet; import java.util.List; import java.util.Set; import java.util.TimeZone; -import java.util.logging.Level; -import java.util.logging.Logger; import javax.ws.rs.GET; import javax.ws.rs.Path; import javax.ws.rs.Produces; @@ -44,16 +42,13 @@ import no.nibio.vips.logic.entity.Organization; import no.nibio.vips.logic.entity.PointOfInterestWeatherStation; import no.nibio.vips.logic.entity.WeatherStationDataSource; import no.nibio.vips.logic.scheduling.model.PreprocessorException; -import no.nibio.vips.logic.scheduling.model.preprocessor.SeptoriaApiicolaModelPreprocessor; import no.nibio.vips.logic.scheduling.model.preprocessor.SeptoriaHumidityModelPreprocessor; import no.nibio.vips.logic.util.RunModelException; import no.nibio.vips.logic.util.SessionControllerGetter; import no.nibio.vips.logic.util.SystemTime; import no.nibio.vips.util.ParseRESTParamUtil; -import no.nibio.vips.util.WeatherElements; import no.nibio.vips.util.WeatherUtil; import no.nibio.vips.util.XDate; -import no.nibio.vips.util.weather.WeatherDataSourceException; import no.nibio.vips.util.weather.WeatherDataSourceUtil; /** @@ -183,6 +178,7 @@ public class ModelFormService { ModelConfiguration mConf = new SeptoriaHumidityModelPreprocessor().getModelConfiguration(fConf); Integer VIPSCoreUserId = organization.getDefaultVipsCoreUserId(); + System.out.println("defaultVIPScoreUserId = " + VIPSCoreUserId); List<Result>results = SessionControllerGetter.getForecastBean().runForecast(mConf, VIPSCoreUserId); diff --git a/src/main/java/no/nibio/vips/logic/util/GISEntityUtil.java b/src/main/java/no/nibio/vips/logic/util/GISEntityUtil.java index 0000b69afdff9fb6ed58ff5f324e9329dd604f43..6b9160c76ffb3e4230a69889ebe84473d3b7d142 100755 --- a/src/main/java/no/nibio/vips/logic/util/GISEntityUtil.java +++ b/src/main/java/no/nibio/vips/logic/util/GISEntityUtil.java @@ -146,7 +146,7 @@ public class GISEntityUtil { - public de.micromata.opengis.kml.v_2_2_0.Coordinate getKMLCoordinateFromJTSCoordinate(com.vividsolutions.jts.geom.Coordinate jtsCoordinate) + public de.micromata.opengis.kml.v_2_2_0.Coordinate getKMLCoordinateFromJTSCoordinate(org.locationtech.jts.geom.Coordinate jtsCoordinate) { return new de.micromata.opengis.kml.v_2_2_0.Coordinate( jtsCoordinate.x, diff --git a/src/main/java/no/nibio/web/forms/FormField.java b/src/main/java/no/nibio/web/forms/FormField.java index 65e23918e16b8888104ca29dfe69439ca0273245..b99a15e2e90f75591b54a3bad0f4e7b101c1d043 100755 --- a/src/main/java/no/nibio/web/forms/FormField.java +++ b/src/main/java/no/nibio/web/forms/FormField.java @@ -21,10 +21,10 @@ package no.nibio.web.forms; import com.fasterxml.jackson.annotation.JsonIgnore; import com.fasterxml.jackson.annotation.JsonIgnoreProperties; -import com.vividsolutions.jts.geom.Coordinate; -import com.vividsolutions.jts.geom.GeometryFactory; -import com.vividsolutions.jts.geom.Point; -import com.vividsolutions.jts.geom.PrecisionModel; +import org.locationtech.jts.geom.Coordinate; +import org.locationtech.jts.geom.GeometryFactory; +import org.locationtech.jts.geom.Point; +import org.locationtech.jts.geom.PrecisionModel; import java.text.ParseException; import java.text.SimpleDateFormat; import java.util.Date; diff --git a/src/test/java/no/nibio/vips/logic/entity/ObservationTest.java b/src/test/java/no/nibio/vips/logic/entity/ObservationTest.java index b3fc6529922d8eee10d3063045ce7a67ed928c08..d1c5c3ee961e2d1cd9832c4944be80ff0cc0fb01 100755 --- a/src/test/java/no/nibio/vips/logic/entity/ObservationTest.java +++ b/src/test/java/no/nibio/vips/logic/entity/ObservationTest.java @@ -18,9 +18,9 @@ */ package no.nibio.vips.logic.entity; -import com.vividsolutions.jts.geom.Coordinate; -import com.vividsolutions.jts.geom.GeometryCollection; -import com.vividsolutions.jts.geom.Point; +import org.locationtech.jts.geom.Coordinate; +import org.locationtech.jts.geom.GeometryCollection; +import org.locationtech.jts.geom.Point; import java.util.Date; import org.junit.After; import org.junit.AfterClass; diff --git a/src/test/java/no/nibio/vips/logic/test/mock/MockModel.java b/src/test/java/no/nibio/vips/logic/test/mock/MockModel.java index 022dab95728cd1a68831ce407bee99bd969545d8..27b0cd98b5aac157e08f3baf7dfa1e8b2ec1aa1e 100644 --- a/src/test/java/no/nibio/vips/logic/test/mock/MockModel.java +++ b/src/test/java/no/nibio/vips/logic/test/mock/MockModel.java @@ -19,8 +19,8 @@ package no.nibio.vips.logic.test.mock; -import com.vividsolutions.jts.geom.Coordinate; -import com.vividsolutions.jts.geom.GeometryFactory; +import org.locationtech.jts.geom.Coordinate; +import org.locationtech.jts.geom.GeometryFactory; import java.util.ArrayList; import java.util.Collections; import java.util.Date; diff --git a/src/test/java/no/nibio/vips/util/weather/YrWeatherForecastProviderTest.java b/src/test/java/no/nibio/vips/util/weather/YrWeatherForecastProviderTest.java index b7294e0c7ca96519f61d6081db62b27faeb6fe8f..4188d964d3d2f5bb00cf9a159a921946d1ac8c2d 100755 --- a/src/test/java/no/nibio/vips/util/weather/YrWeatherForecastProviderTest.java +++ b/src/test/java/no/nibio/vips/util/weather/YrWeatherForecastProviderTest.java @@ -18,8 +18,8 @@ */ package no.nibio.vips.util.weather; -import com.vividsolutions.jts.geom.Coordinate; -import com.vividsolutions.jts.geom.Point; +import org.locationtech.jts.geom.Coordinate; +import org.locationtech.jts.geom.Point; import java.util.Collections; import java.util.List; import no.nibio.vips.entity.WeatherObservation;