As far as we got for now. MAJOR issues with JSONB replacing Jackson still unresolved!

nb-configuration.xml

@@ -25,5 +25,6 @@ Any value defined here will override the pom.xml file value but is only applicab
         <org-netbeans-modules-css-prep.less_2e_compiler_2e_options/>
         <org-netbeans-modules-projectapi.jsf_2e_language>Facelets</org-netbeans-modules-projectapi.jsf_2e_language>
         <netbeans.compile.on.save>none</netbeans.compile.on.save>
+        <org-netbeans-modules-maven-j2ee.netbeans_2e_hint_2e_deploy_2e_server>WildFly</org-netbeans-modules-maven-j2ee.netbeans_2e_hint_2e_deploy_2e_server>
     </properties>
 </project-shared-configuration>

pom.xml

@@ -75,13 +75,13 @@
         <dependency>
             <groupId>org.jboss.resteasy</groupId>
             <artifactId>resteasy-jaxrs</artifactId>
-            <version>3.0.9.Final</version>
+            <version>3.6.3.Final</version>
             <scope>provided</scope> 
         </dependency>
         <dependency>
             <groupId>org.jboss.resteasy</groupId>
             <artifactId>resteasy-client</artifactId>
-            <version>3.0.9.Final</version>
+            <version>3.6.3.Final</version>
             <scope>provided</scope>
         </dependency>
         <dependency>
@@ -140,19 +140,19 @@
         <dependency>
             <groupId>com.fasterxml.jackson.core</groupId>
             <artifactId>jackson-annotations</artifactId>
-            <version>2.7.4</version>
+            <version>2.9.8</version>
             <scope>provided</scope>
         </dependency>
         <dependency>
             <groupId>com.fasterxml.jackson.core</groupId>
             <artifactId>jackson-core</artifactId>
-            <version>2.7.4</version>
+            <version>2.9.8</version>
             <scope>provided</scope>
         </dependency>
         <dependency>
             <groupId>com.fasterxml.jackson.core</groupId>
             <artifactId>jackson-databind</artifactId>
-            <version>2.7.4</version>
+            <version>2.9.8</version>
         </dependency>
         <dependency>
             <groupId>log4j</groupId>
@@ -180,20 +180,20 @@
         <dependency>
             <groupId>com.fasterxml.jackson.dataformat</groupId>
             <artifactId>jackson-dataformat-csv</artifactId>
-            <version>2.6.2</version>
+            <version>2.9.8</version>
             <type>jar</type>
         </dependency>
         <dependency>
             <groupId>javax</groupId>
             <artifactId>javaee-web-api</artifactId>
-            <version>7.0</version>
+            <version>8.0</version>
             <type>jar</type>
             <scope>provided</scope>
         </dependency>
         <dependency>
             <groupId>javax</groupId>
             <artifactId>javaee-api</artifactId>
-            <version>7.0</version>
+            <version>8.0</version>
             <type>jar</type>
             <scope>provided</scope>
         </dependency>

src/main/java/no/nibio/vips/logic/VIPSLogicApplication.java

@@ -56,6 +56,7 @@ public class VIPSLogicApplication extends Application
         resources.add(no.nibio.vips.logic.service.ObservationService.class);
         resources.add(no.nibio.vips.logic.service.ModelFormService.class);
         resources.add(no.nibio.vips.logic.service.JacksonConfig.class);
+        //resources.add(no.nibio.vips.logic.service.JSONBConfig.class);
         //resources.add(no.nibio.vips.coremanager.service.ManagerResourceImpl.class);
     }
     
@@ -70,6 +71,7 @@ public class VIPSLogicApplication extends Application
         resources.add(no.nibio.vips.logic.modules.barleynetblotch.BarleyNetBlotchModelService.class);
         resources.add(no.nibio.vips.logic.modules.roughage.RoughageService.class);
         resources.add(no.nibio.vips.logic.modules.wheatleafblotch.WheatLeafBlotchModelService.class);
+        resources.add(no.nibio.vips.logic.service.JSONBConfig.class);
         resources.add(no.nibio.vips.logic.service.JacksonConfig.class);
         resources.add(no.nibio.vips.logic.service.LogicService.class);
         resources.add(no.nibio.vips.logic.service.ModelFormService.class);

src/main/java/no/nibio/vips/logic/controller/session/ForecastBean.java

@@ -600,6 +600,7 @@ public class ForecastBean {
                 Response resp = this.getManagerResource().runModel(config.getModelId(), request);
                 if(resp.getStatus() == Response.Status.OK.getStatusCode())
                 {
+                    //System.out.println(resp.readEntity(String.class));
                     List<Result> results = (List<Result>) resp.readEntity(new GenericType<List<Result>>(){});
                     //System.out.println("ForecastConfigId=" + forecastConfiguration.getForecastConfigurationId() + ", resultsize=" + results.size());
                     // We delete all former results before we store the new ones

src/main/java/no/nibio/vips/logic/messaging/ForecastEvent.java

@@ -20,20 +20,16 @@
 package no.nibio.vips.logic.messaging;
 
 import java.io.Serializable;
-import java.util.Set;
 import javax.persistence.Basic;
-import javax.persistence.CascadeType;
 import javax.persistence.Column;
 import javax.persistence.Entity;
 import javax.persistence.Id;
 import javax.persistence.NamedQueries;
 import javax.persistence.NamedQuery;
-import javax.persistence.OneToMany;
 import javax.persistence.Table;
 import javax.validation.constraints.NotNull;
 import javax.validation.constraints.Size;
 import javax.xml.bind.annotation.XmlRootElement;
-import javax.xml.bind.annotation.XmlTransient;
 
 /**
  * @copyright 2016 <a href="http://www.nibio.no/">NIBIO</a>

src/main/java/no/nibio/vips/logic/service/JSONBConfig.java

+/*
+ * Copyright (c) 2015 NIBIO <http://www.nibio.no/>. 
+ * 
+ * This file is part of VIPSLogic.
+ * VIPSLogic is free software: you can redistribute it and/or modify
+ * it under the terms of the NIBIO Open Source License as published by 
+ * NIBIO, either version 1 of the License, or (at your option) any
+ * later version.
+ * 
+ * VIPSLogic is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * NIBIO Open Source License for more details.
+ * 
+ * You should have received a copy of the NIBIO Open Source License
+ * along with VIPSLogic.  If not, see <http://www.nibio.no/licenses/>.
+ * 
+ */
+
+package no.nibio.vips.logic.service;
+
+import javax.json.bind.Jsonb;
+import javax.json.bind.JsonbBuilder;
+import javax.json.bind.JsonbConfig;
+import javax.json.bind.annotation.JsonbDateFormat;
+import javax.ws.rs.Consumes;
+import javax.ws.rs.Produces;
+import javax.ws.rs.core.MediaType;
+import javax.ws.rs.ext.ContextResolver;
+import javax.ws.rs.ext.Provider;
+
+import java.util.logging.Level;  
+import java.util.logging.Logger; 
+
+/**
+ * Add this to no.nibio.vips.logic.VIPSLogicApplication if you want all
+ * dates to be serialized as ISO formatted date strings
+ * @copyright 2018 <a href="http://www.nibio.no/">NIBIO</a>
+ * @author Tor-Einar Skog <tor-einar.skog@nibio.no>
+ */
+@Provider
+@Produces(MediaType.APPLICATION_JSON)
+//@Consumes(MediaType.APPLICATION_JSON)
+public class JSONBConfig implements ContextResolver<javax.json.bind.Jsonb>
+{
+    //private final ObjectMapper objectMapper;
+    private final Jsonb jsonB;  
+    private Logger log; 
+
+    public JSONBConfig() throws Exception
+    {
+        log = Logger.getLogger(JacksonConfig.class.getName());  
+        log.log(Level.INFO,"Created JSONBConfig");  
+        //System.out.println("This is what you should expect");
+        JsonbConfig config = new JsonbConfig();  
+        config.setProperty(JsonbConfig.DATE_FORMAT, JsonbDateFormat.DEFAULT_FORMAT);  
+        jsonB = JsonbBuilder.create(config);
+    }
+
+    @Override
+    public Jsonb getContext(Class objectType)
+    {
+        log.log(Level.INFO,"Retrieved Objectmapper "+objectType.toGenericString());  
+        return jsonB;
+    }
+ }
\ No newline at end of file

src/main/java/no/nibio/vips/logic/service/JacksonConfig.java

@@ -20,8 +20,11 @@
 package no.nibio.vips.logic.service;
 
 import com.bedatadriven.jackson.datatype.jts.JtsModule;
+import com.fasterxml.jackson.databind.DeserializationConfig;
+import com.fasterxml.jackson.databind.DeserializationFeature;
 import com.fasterxml.jackson.databind.ObjectMapper;
 import com.fasterxml.jackson.databind.SerializationFeature;
+import java.text.SimpleDateFormat;
 import javax.ws.rs.Consumes;
 import javax.ws.rs.Produces;
 import javax.ws.rs.core.MediaType;
@@ -45,6 +48,8 @@ public class JacksonConfig implements ContextResolver<ObjectMapper>
     {
         objectMapper = new ObjectMapper().configure(
                            SerializationFeature.WRITE_DATES_AS_TIMESTAMPS, false);
+        objectMapper.setDateFormat(new SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ssXXX"));
+        objectMapper.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
         objectMapper.registerModule(new JtsModule());
     }